diff --git a/web/templates/canada_covid19/schema.json b/web/templates/canada_covid19/schema.json index a3faf350..8a7fbefe 100644 --- a/web/templates/canada_covid19/schema.json +++ b/web/templates/canada_covid19/schema.json @@ -988,7 +988,8 @@ }, "Chronic lung disease": { "text": "Chronic lung disease", - "meaning": "HP:0006528" + "meaning": "HP:0006528", + "is_a": "Lung disease" }, "Corticosteroids": { "text": "Corticosteroids", @@ -1064,6 +1065,4309 @@ "Immunocompromised": { "text": "Immunocompromised", "meaning": "NCIT:C14139" + }, + "Lupus": { + "text": "Lupus", + "meaning": "MONDO:0004670", + "is_a": "Immunocompromised" + }, + "Inflammatory bowel disease (IBD)": { + "text": "Inflammatory bowel disease (IBD)", + "meaning": "MONDO:0005265" + }, + "Colitis": { + "text": "Colitis", + "meaning": "HP:0002583", + "is_a": "Inflammatory bowel disease (IBD)" + }, + "Ulcerative colitis": { + "text": "Ulcerative colitis", + "meaning": "HP:0100279", + "is_a": "Colitis" + }, + "Crohn's disease": { + "text": "Crohn's disease", + "meaning": "HP:0100280", + "is_a": "Inflammatory bowel disease (IBD)" + }, + "Renal disorder": { + "text": "Renal disorder", + "meaning": "NCIT:C3149" + }, + "Renal disease": { + "text": "Renal disease", + "meaning": "MONDO:0005240", + "is_a": "Renal disorder" + }, + "Chronic renal disease": { + "text": "Chronic renal disease", + "meaning": "HP:0012622", + "is_a": "Renal disease" + }, + "Renal failure": { + "text": "Renal failure", + "meaning": "HP:0000083", + "is_a": "Renal disease" + }, + "Liver disease": { + "text": "Liver disease", + "meaning": "MONDO:0005154" + }, + "Chronic liver disease": { + "text": "Chronic liver disease", + "meaning": "NCIT:C113609", + "is_a": "Liver disease" + }, + "Fatty liver disease (FLD)": { + "text": "Fatty liver disease (FLD)", + "meaning": "HP:0001397", + "is_a": "Chronic liver disease" + }, + "Myalgia (muscle pain)": { + "text": "Myalgia (muscle pain)", + "meaning": "HP:0003326" + }, + "Myalgic encephalomyelitis (chronic fatigue syndrome)": { + "text": "Myalgic encephalomyelitis (chronic fatigue syndrome)", + "meaning": "MONDO:0005404" + }, + "Neurological disorder": { + "text": "Neurological disorder", + "meaning": "MONDO:0005071" + }, + "Neuromuscular disorder": { + "text": "Neuromuscular disorder", + "meaning": "MONDO:0019056", + "is_a": "Neurological disorder" + }, + "Obesity": { + "text": "Obesity", + "meaning": "HP:0001513" + }, + "Severe obesity": { + "text": "Severe obesity", + "meaning": "MONDO:0005139", + "is_a": "Obesity" + }, + "Respiratory disorder": { + "text": "Respiratory disorder", + "meaning": "MONDO:0005087" + }, + "Asthma": { + "text": "Asthma", + "meaning": "HP:0002099", + "is_a": "Respiratory disorder" + }, + "Chronic bronchitis": { + "text": "Chronic bronchitis", + "meaning": "HP:0004469", + "is_a": "Respiratory disorder" + }, + "Chronic obstructive pulmonary disease": { + "text": "Chronic obstructive pulmonary disease", + "meaning": "HP:0006510", + "is_a": "Respiratory disorder" + }, + "Emphysema": { + "text": "Emphysema", + "meaning": "HP:0002097", + "is_a": "Respiratory disorder" + }, + "Lung disease": { + "text": "Lung disease", + "meaning": "MONDO:0005275", + "is_a": "Respiratory disorder" + }, + "Pulmonary fibrosis": { + "text": "Pulmonary fibrosis", + "meaning": "HP:0002206", + "is_a": "Lung disease" + }, + "Pneumonia": { + "text": "Pneumonia", + "meaning": "HP:0002090", + "is_a": "Respiratory disorder" + }, + "Respiratory failure": { + "text": "Respiratory failure", + "meaning": "HP:0002878", + "is_a": "Respiratory disorder" + }, + "Adult respiratory distress syndrome": { + "text": "Adult respiratory distress syndrome", + "meaning": "HP:0033677", + "is_a": "Respiratory failure" + }, + "Newborn respiratory distress syndrome": { + "text": "Newborn respiratory distress syndrome", + "meaning": "MONDO:0009971", + "is_a": "Respiratory failure" + }, + "Tuberculosis": { + "text": "Tuberculosis", + "meaning": "MONDO:0018076", + "is_a": "Respiratory disorder" + }, + "Postpartum (≤6 weeks)": { + "text": "Postpartum (≤6 weeks)", + "meaning": "GENEPIO:0100077" + }, + "Pregnancy": { + "text": "Pregnancy", + "meaning": "NCIT:C25742" + }, + "Rheumatic disease": { + "text": "Rheumatic disease", + "meaning": "MONDO:0005554" + }, + "Sickle cell disease": { + "text": "Sickle cell disease", + "meaning": "MONDO:0011382" + }, + "Substance use": { + "text": "Substance use", + "meaning": "NBO:0001845" + }, + "Alcohol abuse": { + "text": "Alcohol abuse", + "meaning": "MONDO:0002046", + "is_a": "Substance use" + }, + "Drug abuse": { + "text": "Drug abuse", + "meaning": "GENEPIO:0100078", + "is_a": "Substance use" + }, + "Injection drug abuse": { + "text": "Injection drug abuse", + "meaning": "GENEPIO:0100079", + "is_a": "Drug abuse" + }, + "Smoking": { + "text": "Smoking", + "meaning": "NBO:0015005", + "is_a": "Substance use" + }, + "Vaping": { + "text": "Vaping", + "meaning": "NCIT:C173621", + "is_a": "Substance use" + }, + "Tachypnea (accelerated respiratory rate)": { + "text": "Tachypnea (accelerated respiratory rate)", + "meaning": "HP:0002789" + }, + "Transplant": { + "text": "Transplant", + "meaning": "NCIT:C159659" + }, + "Hematopoietic stem cell transplant (bone marrow transplant)": { + "text": "Hematopoietic stem cell transplant (bone marrow transplant)", + "meaning": "NCIT:C131759", + "is_a": "Transplant" + }, + "Cardiac transplant": { + "text": "Cardiac transplant", + "meaning": "GENEPIO:0100080", + "is_a": "Transplant" + }, + "Kidney transplant": { + "text": "Kidney transplant", + "meaning": "NCIT:C157332", + "is_a": "Transplant" + }, + "Liver transplant": { + "text": "Liver transplant", + "meaning": "GENEPIO:0100081", + "is_a": "Transplant" + } + } + }, + "variant designation menu": { + "name": "variant designation menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Variant of Concern (VOC)": { + "text": "Variant of Concern (VOC)", + "meaning": "GENEPIO:0100082" + }, + "Variant of Interest (VOI)": { + "text": "Variant of Interest (VOI)", + "meaning": "GENEPIO:0100083" + }, + "Variant Under Monitoring (VUM)": { + "text": "Variant Under Monitoring (VUM)", + "meaning": "GENEPIO:0100279" + } + } + }, + "variant evidence menu": { + "name": "variant evidence menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "RT-qPCR": { + "text": "RT-qPCR", + "meaning": "CIDO:0000019" + }, + "Sequencing": { + "text": "Sequencing", + "meaning": "CIDO:0000027" + } + } + }, + "complications menu": { + "name": "complications menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Abnormal blood oxygen level": { + "text": "Abnormal blood oxygen level", + "meaning": "HP:0500165" + }, + "Acute kidney injury": { + "text": "Acute kidney injury", + "meaning": "HP:0001919" + }, + "Acute lung injury": { + "text": "Acute lung injury", + "meaning": "MONDO:0015796" + }, + "Ventilation induced lung injury (VILI)": { + "text": "Ventilation induced lung injury (VILI)", + "meaning": "GENEPIO:0100092", + "is_a": "Acute lung injury" + }, + "Acute respiratory failure": { + "text": "Acute respiratory failure", + "meaning": "MONDO:0001208" + }, + "Arrhythmia (complication)": { + "text": "Arrhythmia (complication)", + "meaning": "HP:0011675" + }, + "Tachycardia": { + "text": "Tachycardia", + "meaning": "HP:0001649", + "is_a": "Arrhythmia (complication)" + }, + "Polymorphic ventricular tachycardia (VT)": { + "text": "Polymorphic ventricular tachycardia (VT)", + "meaning": "HP:0031677", + "is_a": "Tachycardia" + }, + "Tachyarrhythmia": { + "text": "Tachyarrhythmia", + "meaning": "GENEPIO:0100084", + "is_a": "Tachycardia" + }, + "Cardiac injury": { + "text": "Cardiac injury", + "meaning": "GENEPIO:0100074" + }, + "Cardiac arrest": { + "text": "Cardiac arrest", + "meaning": "HP:0001695" + }, + "Cardiogenic shock": { + "text": "Cardiogenic shock", + "meaning": "HP:0030149" + }, + "Blood clot": { + "text": "Blood clot", + "meaning": "HP:0001977" + }, + "Arterial clot": { + "text": "Arterial clot", + "meaning": "HP:0004420", + "is_a": "Blood clot" + }, + "Deep vein thrombosis (DVT)": { + "text": "Deep vein thrombosis (DVT)", + "meaning": "HP:0002625", + "is_a": "Blood clot" + }, + "Pulmonary embolism (PE)": { + "text": "Pulmonary embolism (PE)", + "meaning": "HP:0002204", + "is_a": "Blood clot" + }, + "Cardiomyopathy": { + "text": "Cardiomyopathy", + "meaning": "HP:0001638" + }, + "Central nervous system invasion": { + "text": "Central nervous system invasion", + "meaning": "MONDO:0024619" + }, + "Stroke (complication)": { + "text": "Stroke (complication)", + "meaning": "HP:0001297" + }, + "Central Nervous System Vasculitis": { + "text": "Central Nervous System Vasculitis", + "meaning": "MONDO:0003346", + "is_a": "Stroke (complication)" + }, + "Acute ischemic stroke": { + "text": "Acute ischemic stroke", + "meaning": "HP:0002140", + "is_a": "Stroke (complication)" + }, + "Coma": { + "text": "Coma", + "meaning": "HP:0001259" + }, + "Convulsions": { + "text": "Convulsions", + "meaning": "HP:0011097" + }, + "COVID-19 associated coagulopathy (CAC)": { + "text": "COVID-19 associated coagulopathy (CAC)", + "meaning": "NCIT:C171562" + }, + "Cystic fibrosis": { + "text": "Cystic fibrosis", + "meaning": "MONDO:0009061" + }, + "Cytokine release syndrome": { + "text": "Cytokine release syndrome", + "meaning": "MONDO:0600008" + }, + "Disseminated intravascular coagulation (DIC)": { + "text": "Disseminated intravascular coagulation (DIC)", + "meaning": "MPATH:108" + }, + "Encephalopathy": { + "text": "Encephalopathy", + "meaning": "HP:0001298" + }, + "Fulminant myocarditis": { + "text": "Fulminant myocarditis", + "meaning": "GENEPIO:0100088" + }, + "Guillain-Barré syndrome": { + "text": "Guillain-Barré syndrome", + "meaning": "MONDO:0016218" + }, + "Internal hemorrhage (complication; internal bleeding)": { + "text": "Internal hemorrhage (complication; internal bleeding)", + "meaning": "HP:0011029" + }, + "Intracerebral haemorrhage": { + "text": "Intracerebral haemorrhage", + "meaning": "MONDO:0013792", + "is_a": "Internal hemorrhage (complication; internal bleeding)" + }, + "Kawasaki disease": { + "text": "Kawasaki disease", + "meaning": "MONDO:0012727" + }, + "Complete Kawasaki disease": { + "text": "Complete Kawasaki disease", + "meaning": "GENEPIO:0100089", + "is_a": "Kawasaki disease" + }, + "Incomplete Kawasaki disease": { + "text": "Incomplete Kawasaki disease", + "meaning": "GENEPIO:0100090", + "is_a": "Kawasaki disease" + }, + "Liver dysfunction": { + "text": "Liver dysfunction", + "meaning": "HP:0001410" + }, + "Acute liver injury": { + "text": "Acute liver injury", + "meaning": "GENEPIO:0100091", + "is_a": "Liver dysfunction" + }, + "Long COVID-19": { + "text": "Long COVID-19", + "meaning": "MONDO:0100233" + }, + "Meningitis": { + "text": "Meningitis", + "meaning": "HP:0001287" + }, + "Migraine": { + "text": "Migraine", + "meaning": "HP:0002076" + }, + "Miscarriage": { + "text": "Miscarriage", + "meaning": "HP:0005268" + }, + "Multisystem inflammatory syndrome in children (MIS-C)": { + "text": "Multisystem inflammatory syndrome in children (MIS-C)", + "meaning": "MONDO:0100163" + }, + "Multisystem inflammatory syndrome in adults (MIS-A)": { + "text": "Multisystem inflammatory syndrome in adults (MIS-A)", + "meaning": "MONDO:0100319" + }, + "Muscle injury": { + "text": "Muscle injury", + "meaning": "GENEPIO:0100093" + }, + "Myalgic encephalomyelitis (ME)": { + "text": "Myalgic encephalomyelitis (ME)", + "meaning": "MONDO:0005404" + }, + "Myocardial infarction (heart attack)": { + "text": "Myocardial infarction (heart attack)", + "meaning": "MONDO:0005068" + }, + "Acute myocardial infarction": { + "text": "Acute myocardial infarction", + "meaning": "MONDO:0004781", + "is_a": "Myocardial infarction (heart attack)" + }, + "ST-segment elevation myocardial infarction": { + "text": "ST-segment elevation myocardial infarction", + "meaning": "MONDO:0041656", + "is_a": "Myocardial infarction (heart attack)" + }, + "Myocardial injury": { + "text": "Myocardial injury", + "meaning": "HP:0001700" + }, + "Neonatal complications": { + "text": "Neonatal complications", + "meaning": "NCIT:C168498" + }, + "Noncardiogenic pulmonary edema": { + "text": "Noncardiogenic pulmonary edema", + "meaning": "GENEPIO:0100085" + }, + "Acute respiratory distress syndrome (ARDS)": { + "text": "Acute respiratory distress syndrome (ARDS)", + "meaning": "HP:0033677", + "is_a": "Noncardiogenic pulmonary edema" + }, + "COVID-19 associated ARDS (CARDS)": { + "text": "COVID-19 associated ARDS (CARDS)", + "meaning": "NCIT:C171551", + "is_a": "Acute respiratory distress syndrome (ARDS)" + }, + "Neurogenic pulmonary edema (NPE)": { + "text": "Neurogenic pulmonary edema (NPE)", + "meaning": "GENEPIO:0100086", + "is_a": "Acute respiratory distress syndrome (ARDS)" + }, + "Organ failure": { + "text": "Organ failure", + "meaning": "GENEPIO:0100094" + }, + "Heart failure": { + "text": "Heart failure", + "meaning": "HP:0001635", + "is_a": "Organ failure" + }, + "Liver failure": { + "text": "Liver failure", + "meaning": "MONDO:0100192", + "is_a": "Organ failure" + }, + "Paralysis": { + "text": "Paralysis", + "meaning": "HP:0003470" + }, + "Pneumothorax (collapsed lung)": { + "text": "Pneumothorax (collapsed lung)", + "meaning": "HP:0002107" + }, + "Spontaneous pneumothorax": { + "text": "Spontaneous pneumothorax", + "meaning": "HP:0002108", + "is_a": "Pneumothorax (collapsed lung)" + }, + "Spontaneous tension pneumothorax": { + "text": "Spontaneous tension pneumothorax", + "meaning": "MONDO:0002075", + "is_a": "Pneumothorax (collapsed lung)" + }, + "Pneumonia (complication)": { + "text": "Pneumonia (complication)", + "meaning": "HP:0002090" + }, + "COVID-19 pneumonia": { + "text": "COVID-19 pneumonia", + "meaning": "NCIT:C171550", + "is_a": "Pneumonia (complication)" + }, + "Pregancy complications": { + "text": "Pregancy complications", + "meaning": "HP:0001197" + }, + "Rhabdomyolysis": { + "text": "Rhabdomyolysis", + "meaning": "HP:0003201" + }, + "Secondary infection": { + "text": "Secondary infection", + "meaning": "IDO:0000567" + }, + "Secondary staph infection": { + "text": "Secondary staph infection", + "meaning": "GENEPIO:0100095", + "is_a": "Secondary infection" + }, + "Secondary strep infection": { + "text": "Secondary strep infection", + "meaning": "GENEPIO:0100096", + "is_a": "Secondary infection" + }, + "Seizure (complication)": { + "text": "Seizure (complication)", + "meaning": "HP:0001250" + }, + "Motor seizure": { + "text": "Motor seizure", + "meaning": "HP:0020219", + "is_a": "Seizure (complication)" + }, + "Sepsis/Septicemia": { + "text": "Sepsis/Septicemia", + "meaning": "HP:0100806" + }, + "Sepsis": { + "text": "Sepsis", + "meaning": "IDO:0000636", + "is_a": "Sepsis/Septicemia" + }, + "Septicemia": { + "text": "Septicemia", + "meaning": "NCIT:C3364", + "is_a": "Sepsis/Septicemia" + }, + "Shock": { + "text": "Shock", + "meaning": "HP:0031273" + }, + "Hyperinflammatory shock": { + "text": "Hyperinflammatory shock", + "meaning": "GENEPIO:0100097", + "is_a": "Shock" + }, + "Refractory cardiogenic shock": { + "text": "Refractory cardiogenic shock", + "meaning": "GENEPIO:0100098", + "is_a": "Shock" + }, + "Refractory cardiogenic plus vasoplegic shock": { + "text": "Refractory cardiogenic plus vasoplegic shock", + "meaning": "GENEPIO:0100099", + "is_a": "Shock" + }, + "Septic shock": { + "text": "Septic shock", + "meaning": "NCIT:C35018", + "is_a": "Shock" + }, + "Vasculitis": { + "text": "Vasculitis", + "meaning": "HP:0002633" + } + } + }, + "vaccine name menu": { + "name": "vaccine name menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Astrazeneca (Vaxzevria)": { + "text": "Astrazeneca (Vaxzevria)", + "meaning": "GENEPIO:0100308" + }, + "Johnson & Johnson (Janssen)": { + "text": "Johnson & Johnson (Janssen)", + "meaning": "GENEPIO:0100307" + }, + "Moderna (Spikevax)": { + "text": "Moderna (Spikevax)", + "meaning": "GENEPIO:0100304" + }, + "Pfizer-BioNTech (Comirnaty)": { + "text": "Pfizer-BioNTech (Comirnaty)", + "meaning": "GENEPIO:0100305" + }, + "Pfizer-BioNTech (Comirnaty Pediatric)": { + "text": "Pfizer-BioNTech (Comirnaty Pediatric)", + "meaning": "GENEPIO:0100306" + } + } + }, + "anatomical material menu": { + "name": "anatomical material menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Blood": { + "text": "Blood", + "meaning": "UBERON:0000178" + }, + "Fluid": { + "text": "Fluid", + "meaning": "UBERON:0006314" + }, + "Saliva": { + "text": "Saliva", + "meaning": "UBERON:0001836", + "is_a": "Fluid" + }, + "Fluid (cerebrospinal (CSF))": { + "text": "Fluid (cerebrospinal (CSF))", + "meaning": "UBERON:0001359", + "is_a": "Fluid" + }, + "Fluid (pericardial)": { + "text": "Fluid (pericardial)", + "meaning": "UBERON:0002409", + "is_a": "Fluid" + }, + "Fluid (pleural)": { + "text": "Fluid (pleural)", + "meaning": "UBERON:0001087", + "is_a": "Fluid" + }, + "Fluid (vaginal)": { + "text": "Fluid (vaginal)", + "meaning": "UBERON:0036243", + "is_a": "Fluid" + }, + "Fluid (amniotic)": { + "text": "Fluid (amniotic)", + "meaning": "UBERON:0000173", + "is_a": "Fluid" + }, + "Tissue": { + "text": "Tissue", + "meaning": "UBERON:0000479" + } + } + }, + "anatomical part menu": { + "name": "anatomical part menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Anus": { + "text": "Anus", + "meaning": "UBERON:0001245" + }, + "Buccal mucosa": { + "text": "Buccal mucosa", + "meaning": "UBERON:0006956" + }, + "Duodenum": { + "text": "Duodenum", + "meaning": "UBERON:0002114" + }, + "Eye": { + "text": "Eye", + "meaning": "UBERON:0000970" + }, + "Intestine": { + "text": "Intestine", + "meaning": "UBERON:0000160" + }, + "Lower respiratory tract": { + "text": "Lower respiratory tract", + "meaning": "UBERON:0001558" + }, + "Bronchus": { + "text": "Bronchus", + "meaning": "UBERON:0002185", + "is_a": "Lower respiratory tract" + }, + "Lung": { + "text": "Lung", + "meaning": "UBERON:0002048", + "is_a": "Lower respiratory tract" + }, + "Bronchiole": { + "text": "Bronchiole", + "meaning": "UBERON:0002186", + "is_a": "Lung" + }, + "Alveolar sac": { + "text": "Alveolar sac", + "meaning": "UBERON:0002169", + "is_a": "Lung" + }, + "Pleural sac": { + "text": "Pleural sac", + "meaning": "UBERON:0009778", + "is_a": "Lower respiratory tract" + }, + "Pleural cavity": { + "text": "Pleural cavity", + "meaning": "UBERON:0002402", + "is_a": "Pleural sac" + }, + "Trachea": { + "text": "Trachea", + "meaning": "UBERON:0003126", + "is_a": "Lower respiratory tract" + }, + "Rectum": { + "text": "Rectum", + "meaning": "UBERON:0001052" + }, + "Skin": { + "text": "Skin", + "meaning": "UBERON:0001003" + }, + "Stomach": { + "text": "Stomach", + "meaning": "UBERON:0000945" + }, + "Upper respiratory tract": { + "text": "Upper respiratory tract", + "meaning": "UBERON:0001557" + }, + "Anterior Nares": { + "text": "Anterior Nares", + "meaning": "UBERON:2001427", + "is_a": "Upper respiratory tract" + }, + "Esophagus": { + "text": "Esophagus", + "meaning": "UBERON:0001043", + "is_a": "Upper respiratory tract" + }, + "Ethmoid sinus": { + "text": "Ethmoid sinus", + "meaning": "UBERON:0002453", + "is_a": "Upper respiratory tract" + }, + "Nasal Cavity": { + "text": "Nasal Cavity", + "meaning": "UBERON:0001707", + "is_a": "Upper respiratory tract" + }, + "Middle Nasal Turbinate": { + "text": "Middle Nasal Turbinate", + "meaning": "UBERON:0005921", + "is_a": "Nasal Cavity" + }, + "Inferior Nasal Turbinate": { + "text": "Inferior Nasal Turbinate", + "meaning": "UBERON:0005922", + "is_a": "Nasal Cavity" + }, + "Nasopharynx (NP)": { + "text": "Nasopharynx (NP)", + "meaning": "UBERON:0001728", + "is_a": "Upper respiratory tract" + }, + "Oropharynx (OP)": { + "text": "Oropharynx (OP)", + "meaning": "UBERON:0001729", + "is_a": "Upper respiratory tract" + }, + "Pharynx (throat)": { + "text": "Pharynx (throat)", + "meaning": "UBERON:0000341", + "is_a": "Upper respiratory tract" + } + } + }, + "body product menu": { + "name": "body product menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Breast Milk": { + "text": "Breast Milk", + "meaning": "UBERON:0001913" + }, + "Feces": { + "text": "Feces", + "meaning": "UBERON:0001988" + }, + "Fluid (seminal)": { + "text": "Fluid (seminal)", + "meaning": "UBERON:0006530" + }, + "Mucus": { + "text": "Mucus", + "meaning": "UBERON:0000912" + }, + "Sputum": { + "text": "Sputum", + "meaning": "UBERON:0007311", + "is_a": "Mucus" + }, + "Sweat": { + "text": "Sweat", + "meaning": "UBERON:0001089" + }, + "Tear": { + "text": "Tear", + "meaning": "UBERON:0001827" + }, + "Urine": { + "text": "Urine", + "meaning": "UBERON:0001088" + } + } + }, + "prior SARS-CoV-2 infection menu": { + "name": "prior SARS-CoV-2 infection menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Prior infection": { + "text": "Prior infection", + "meaning": "GENEPIO:0100037" + }, + "No prior infection": { + "text": "No prior infection", + "meaning": "GENEPIO:0100233" + } + } + }, + "environmental material menu": { + "name": "environmental material menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Air vent": { + "text": "Air vent", + "meaning": "ENVO:03501208" + }, + "Banknote": { + "text": "Banknote", + "meaning": "ENVO:00003896" + }, + "Bed rail": { + "text": "Bed rail", + "meaning": "ENVO:03501209" + }, + "Building floor": { + "text": "Building floor", + "meaning": "ENVO:01000486" + }, + "Cloth": { + "text": "Cloth", + "meaning": "ENVO:02000058" + }, + "Control panel": { + "text": "Control panel", + "meaning": "ENVO:03501210" + }, + "Door": { + "text": "Door", + "meaning": "ENVO:03501220" + }, + "Door handle": { + "text": "Door handle", + "meaning": "ENVO:03501211" + }, + "Face mask": { + "text": "Face mask", + "meaning": "OBI:0002787" + }, + "Face shield": { + "text": "Face shield", + "meaning": "OBI:0002791" + }, + "Food": { + "text": "Food", + "meaning": "FOODON:00002403" + }, + "Food packaging": { + "text": "Food packaging", + "meaning": "FOODON:03490100" + }, + "Glass": { + "text": "Glass", + "meaning": "ENVO:01000481" + }, + "Handrail": { + "text": "Handrail", + "meaning": "ENVO:03501212" + }, + "Hospital gown": { + "text": "Hospital gown", + "meaning": "OBI:0002796" + }, + "Light switch": { + "text": "Light switch", + "meaning": "ENVO:03501213" + }, + "Locker": { + "text": "Locker", + "meaning": "ENVO:03501214" + }, + "N95 mask": { + "text": "N95 mask", + "meaning": "OBI:0002790" + }, + "Nurse call button": { + "text": "Nurse call button", + "meaning": "ENVO:03501215" + }, + "Paper": { + "text": "Paper", + "meaning": "ENVO:03501256" + }, + "Particulate matter": { + "text": "Particulate matter", + "meaning": "ENVO:01000060" + }, + "Plastic": { + "text": "Plastic", + "meaning": "ENVO:01000404" + }, + "PPE gown": { + "text": "PPE gown", + "meaning": "GENEPIO:0100025" + }, + "Sewage": { + "text": "Sewage", + "meaning": "ENVO:00002018" + }, + "Sink": { + "text": "Sink", + "meaning": "ENVO:01000990" + }, + "Soil": { + "text": "Soil", + "meaning": "ENVO:00001998" + }, + "Stainless steel": { + "text": "Stainless steel", + "meaning": "ENVO:03501216" + }, + "Tissue paper": { + "text": "Tissue paper", + "meaning": "ENVO:03501217" + }, + "Toilet bowl": { + "text": "Toilet bowl", + "meaning": "ENVO:03501218" + }, + "Water": { + "text": "Water", + "meaning": "ENVO:00002006" + }, + "Wastewater": { + "text": "Wastewater", + "meaning": "ENVO:00002001", + "is_a": "Water" + }, + "Window": { + "text": "Window", + "meaning": "ENVO:03501219" + }, + "Wood": { + "text": "Wood", + "meaning": "ENVO:00002040" + } + } + }, + "environmental site menu": { + "name": "environmental site menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Acute care facility": { + "text": "Acute care facility", + "meaning": "ENVO:03501135" + }, + "Animal house": { + "text": "Animal house", + "meaning": "ENVO:00003040" + }, + "Bathroom": { + "text": "Bathroom", + "meaning": "ENVO:01000422" + }, + "Clinical assessment centre": { + "text": "Clinical assessment centre", + "meaning": "ENVO:03501136" + }, + "Conference venue": { + "text": "Conference venue", + "meaning": "ENVO:03501127" + }, + "Corridor": { + "text": "Corridor", + "meaning": "ENVO:03501121" + }, + "Daycare": { + "text": "Daycare", + "meaning": "ENVO:01000927" + }, + "Emergency room (ER)": { + "text": "Emergency room (ER)", + "meaning": "ENVO:03501145" + }, + "Family practice clinic": { + "text": "Family practice clinic", + "meaning": "ENVO:03501186" + }, + "Group home": { + "text": "Group home", + "meaning": "ENVO:03501196" + }, + "Homeless shelter": { + "text": "Homeless shelter", + "meaning": "ENVO:03501133" + }, + "Hospital": { + "text": "Hospital", + "meaning": "ENVO:00002173" + }, + "Intensive Care Unit (ICU)": { + "text": "Intensive Care Unit (ICU)", + "meaning": "ENVO:03501152" + }, + "Long Term Care Facility": { + "text": "Long Term Care Facility", + "meaning": "ENVO:03501194" + }, + "Patient room": { + "text": "Patient room", + "meaning": "ENVO:03501180" + }, + "Prison": { + "text": "Prison", + "meaning": "ENVO:03501204" + }, + "Production Facility": { + "text": "Production Facility", + "meaning": "ENVO:01000536" + }, + "School": { + "text": "School", + "meaning": "ENVO:03501130" + }, + "Sewage Plant": { + "text": "Sewage Plant", + "meaning": "ENVO:00003043" + }, + "Subway train": { + "text": "Subway train", + "meaning": "ENVO:03501109" + }, + "University campus": { + "text": "University campus", + "meaning": "ENVO:00000467" + }, + "Wet market": { + "text": "Wet market", + "meaning": "ENVO:03501198" + } + } + }, + "collection method menu": { + "name": "collection method menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Amniocentesis": { + "text": "Amniocentesis", + "meaning": "NCIT:C52009" + }, + "Aspiration": { + "text": "Aspiration", + "meaning": "NCIT:C15631" + }, + "Suprapubic Aspiration": { + "text": "Suprapubic Aspiration", + "meaning": "GENEPIO:0100028", + "is_a": "Aspiration" + }, + "Tracheal aspiration": { + "text": "Tracheal aspiration", + "meaning": "GENEPIO:0100029", + "is_a": "Aspiration" + }, + "Vacuum Aspiration": { + "text": "Vacuum Aspiration", + "meaning": "GENEPIO:0100030", + "is_a": "Aspiration" + }, + "Biopsy": { + "text": "Biopsy", + "meaning": "OBI:0002650" + }, + "Needle Biopsy": { + "text": "Needle Biopsy", + "meaning": "OBI:0002651", + "is_a": "Biopsy" + }, + "Filtration": { + "text": "Filtration", + "meaning": "OBI:0302885" + }, + "Air filtration": { + "text": "Air filtration", + "meaning": "GENEPIO:0100031", + "is_a": "Filtration" + }, + "Lavage": { + "text": "Lavage", + "meaning": "OBI:0600044" + }, + "Bronchoalveolar lavage (BAL)": { + "text": "Bronchoalveolar lavage (BAL)", + "meaning": "GENEPIO:0100032", + "is_a": "Lavage" + }, + "Gastric Lavage": { + "text": "Gastric Lavage", + "meaning": "GENEPIO:0100033", + "is_a": "Lavage" + }, + "Lumbar Puncture": { + "text": "Lumbar Puncture", + "meaning": "NCIT:C15327" + }, + "Necropsy": { + "text": "Necropsy", + "meaning": "MMO:0000344" + }, + "Phlebotomy": { + "text": "Phlebotomy", + "meaning": "NCIT:C28221" + }, + "Rinsing": { + "text": "Rinsing", + "meaning": "GENEPIO:0002116" + }, + "Saline gargle (mouth rinse and gargle)": { + "text": "Saline gargle (mouth rinse and gargle)", + "meaning": "GENEPIO:0100034", + "is_a": "Rinsing" + }, + "Scraping": { + "text": "Scraping", + "meaning": "GENEPIO:0100035" + }, + "Swabbing": { + "text": "Swabbing", + "meaning": "GENEPIO:0002117" + }, + "Finger Prick": { + "text": "Finger Prick", + "meaning": "GENEPIO:0100036" + }, + "Washout Tear Collection": { + "text": "Washout Tear Collection", + "meaning": "GENEPIO:0100038" + } + } + }, + "collection device menu": { + "name": "collection device menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Air filter": { + "text": "Air filter", + "meaning": "ENVO:00003968" + }, + "Blood Collection Tube": { + "text": "Blood Collection Tube", + "meaning": "OBI:0002859" + }, + "Bronchoscope": { + "text": "Bronchoscope", + "meaning": "OBI:0002826" + }, + "Collection Container": { + "text": "Collection Container", + "meaning": "OBI:0002088" + }, + "Collection Cup": { + "text": "Collection Cup", + "meaning": "GENEPIO:0100026" + }, + "Fibrobronchoscope Brush": { + "text": "Fibrobronchoscope Brush", + "meaning": "OBI:0002825" + }, + "Filter": { + "text": "Filter", + "meaning": "GENEPIO:0100103" + }, + "Fine Needle": { + "text": "Fine Needle", + "meaning": "OBI:0002827" + }, + "Microcapillary tube": { + "text": "Microcapillary tube", + "meaning": "OBI:0002858" + }, + "Micropipette": { + "text": "Micropipette", + "meaning": "OBI:0001128" + }, + "Needle": { + "text": "Needle", + "meaning": "OBI:0000436" + }, + "Serum Collection Tube": { + "text": "Serum Collection Tube", + "meaning": "OBI:0002860" + }, + "Sputum Collection Tube": { + "text": "Sputum Collection Tube", + "meaning": "OBI:0002861" + }, + "Suction Catheter": { + "text": "Suction Catheter", + "meaning": "OBI:0002831" + }, + "Swab": { + "text": "Swab", + "meaning": "GENEPIO:0100027" + }, + "Urine Collection Tube": { + "text": "Urine Collection Tube", + "meaning": "OBI:0002862" + }, + "Virus Transport Medium": { + "text": "Virus Transport Medium", + "meaning": "OBI:0002866" + } + } + }, + "host (scientific name) menu": { + "name": "host (scientific name) menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Homo sapiens": { + "text": "Homo sapiens", + "meaning": "NCBITaxon:9606" + }, + "Bos taurus": { + "text": "Bos taurus", + "meaning": "NCBITaxon:9913" + }, + "Canis lupus familiaris": { + "text": "Canis lupus familiaris", + "meaning": "NCBITaxon:9615" + }, + "Chiroptera": { + "text": "Chiroptera", + "meaning": "NCBITaxon:9397" + }, + "Columbidae": { + "text": "Columbidae", + "meaning": "NCBITaxon:8930" + }, + "Felis catus": { + "text": "Felis catus", + "meaning": "NCBITaxon:9685" + }, + "Gallus gallus": { + "text": "Gallus gallus", + "meaning": "NCBITaxon:9031" + }, + "Manis": { + "text": "Manis", + "meaning": "NCBITaxon:9973" + }, + "Manis javanica": { + "text": "Manis javanica", + "meaning": "NCBITaxon:9974" + }, + "Neovison vison": { + "text": "Neovison vison", + "meaning": "NCBITaxon:452646" + }, + "Panthera leo": { + "text": "Panthera leo", + "meaning": "NCBITaxon:9689" + }, + "Panthera tigris": { + "text": "Panthera tigris", + "meaning": "NCBITaxon:9694" + }, + "Rhinolophidae": { + "text": "Rhinolophidae", + "meaning": "NCBITaxon:58055" + }, + "Rhinolophus affinis": { + "text": "Rhinolophus affinis", + "meaning": "NCBITaxon:59477" + }, + "Sus scrofa domesticus": { + "text": "Sus scrofa domesticus", + "meaning": "NCBITaxon:9825" + }, + "Viverridae": { + "text": "Viverridae", + "meaning": "NCBITaxon:9673" + } + } + }, + "host (common name) menu": { + "name": "host (common name) menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Human": { + "text": "Human", + "meaning": "NCBITaxon:9606" + }, + "Bat": { + "text": "Bat", + "meaning": "NCBITaxon:9397" + }, + "Cat": { + "text": "Cat", + "meaning": "NCBITaxon:9685" + }, + "Chicken": { + "text": "Chicken", + "meaning": "NCBITaxon:9031" + }, + "Civets": { + "text": "Civets", + "meaning": "NCBITaxon:9673" + }, + "Cow": { + "text": "Cow", + "meaning": "NCBITaxon:9913", + "exact_mappings": [ + "CNPHI:bovine" + ] + }, + "Dog": { + "text": "Dog", + "meaning": "NCBITaxon:9615" + }, + "Lion": { + "text": "Lion", + "meaning": "NCBITaxon:9689" + }, + "Mink": { + "text": "Mink", + "meaning": "NCBITaxon:452646" + }, + "Pangolin": { + "text": "Pangolin", + "meaning": "NCBITaxon:9973" + }, + "Pig": { + "text": "Pig", + "meaning": "NCBITaxon:9825", + "exact_mappings": [ + "CNPHI:porcine" + ] + }, + "Pigeon": { + "text": "Pigeon", + "meaning": "NCBITaxon:8930" + }, + "Tiger": { + "text": "Tiger", + "meaning": "NCBITaxon:9694" + } + } + }, + "host health state menu": { + "name": "host health state menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Asymptomatic": { + "text": "Asymptomatic", + "meaning": "NCIT:C3833" + }, + "Deceased": { + "text": "Deceased", + "meaning": "NCIT:C28554" + }, + "Healthy": { + "text": "Healthy", + "meaning": "NCIT:C115935" + }, + "Recovered": { + "text": "Recovered", + "meaning": "NCIT:C49498" + }, + "Symptomatic": { + "text": "Symptomatic", + "meaning": "NCIT:C25269" + } + } + }, + "host health status details menu": { + "name": "host health status details menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Hospitalized": { + "text": "Hospitalized", + "meaning": "NCIT:C25179" + }, + "Hospitalized (Non-ICU)": { + "text": "Hospitalized (Non-ICU)", + "meaning": "GENEPIO:0100045", + "is_a": "Hospitalized" + }, + "Hospitalized (ICU)": { + "text": "Hospitalized (ICU)", + "meaning": "GENEPIO:0100046", + "is_a": "Hospitalized" + }, + "Mechanical Ventilation": { + "text": "Mechanical Ventilation", + "meaning": "NCIT:C70909" + }, + "Medically Isolated": { + "text": "Medically Isolated", + "meaning": "GENEPIO:0100047" + }, + "Medically Isolated (Negative Pressure)": { + "text": "Medically Isolated (Negative Pressure)", + "meaning": "GENEPIO:0100048", + "is_a": "Medically Isolated" + }, + "Self-quarantining": { + "text": "Self-quarantining", + "meaning": "NCIT:C173768" + } + } + }, + "host health outcome menu": { + "name": "host health outcome menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Deceased": { + "text": "Deceased", + "meaning": "NCIT:C28554" + }, + "Deteriorating": { + "text": "Deteriorating", + "meaning": "NCIT:C25254" + }, + "Recovered": { + "text": "Recovered", + "meaning": "NCIT:C49498" + }, + "Stable": { + "text": "Stable", + "meaning": "NCIT:C30103" + } + } + }, + "organism menu": { + "name": "organism menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Severe acute respiratory syndrome coronavirus 2": { + "text": "Severe acute respiratory syndrome coronavirus 2", + "meaning": "NCBITaxon:2697049" + }, + "RaTG13": { + "text": "RaTG13", + "meaning": "NCBITaxon:2709072" + }, + "RmYN02": { + "text": "RmYN02", + "meaning": "GENEPIO:0100000" + } + } + }, + "purpose of sampling menu": { + "name": "purpose of sampling menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Cluster/Outbreak investigation": { + "text": "Cluster/Outbreak investigation", + "meaning": "GENEPIO:0100001" + }, + "Diagnostic testing": { + "text": "Diagnostic testing", + "meaning": "GENEPIO:0100002" + }, + "Research": { + "text": "Research", + "meaning": "GENEPIO:0100003" + }, + "Surveillance": { + "text": "Surveillance", + "meaning": "GENEPIO:0100004" + } + } + }, + "purpose of sequencing menu": { + "name": "purpose of sequencing menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Baseline surveillance (random sampling)": { + "text": "Baseline surveillance (random sampling)", + "meaning": "GENEPIO:0100005" + }, + "Targeted surveillance (non-random sampling)": { + "text": "Targeted surveillance (non-random sampling)", + "meaning": "GENEPIO:0100006" + }, + "Priority surveillance project": { + "text": "Priority surveillance project", + "meaning": "GENEPIO:0100007", + "is_a": "Targeted surveillance (non-random sampling)" + }, + "Screening for Variants of Concern (VoC)": { + "text": "Screening for Variants of Concern (VoC)", + "meaning": "GENEPIO:0100008", + "is_a": "Priority surveillance project" + }, + "Sample has epidemiological link to Variant of Concern (VoC)": { + "text": "Sample has epidemiological link to Variant of Concern (VoC)", + "meaning": "GENEPIO:0100273", + "is_a": "Screening for Variants of Concern (VoC)" + }, + "Sample has epidemiological link to Omicron Variant": { + "text": "Sample has epidemiological link to Omicron Variant", + "meaning": "GENEPIO:0100274", + "is_a": "Sample has epidemiological link to Variant of Concern (VoC)" + }, + "Longitudinal surveillance (repeat sampling of individuals)": { + "text": "Longitudinal surveillance (repeat sampling of individuals)", + "meaning": "GENEPIO:0100009", + "is_a": "Priority surveillance project" + }, + "Chronic (prolonged) infection surveillance": { + "text": "Chronic (prolonged) infection surveillance", + "meaning": "GENEPIO:0100842", + "is_a": "Longitudinal surveillance (repeat sampling of individuals)" + }, + "Re-infection surveillance": { + "text": "Re-infection surveillance", + "meaning": "GENEPIO:0100010", + "is_a": "Priority surveillance project" + }, + "Vaccine escape surveillance": { + "text": "Vaccine escape surveillance", + "meaning": "GENEPIO:0100011", + "is_a": "Priority surveillance project" + }, + "Travel-associated surveillance": { + "text": "Travel-associated surveillance", + "meaning": "GENEPIO:0100012", + "is_a": "Priority surveillance project" + }, + "Domestic travel surveillance": { + "text": "Domestic travel surveillance", + "meaning": "GENEPIO:0100013", + "is_a": "Travel-associated surveillance" + }, + "Interstate/ interprovincial travel surveillance": { + "text": "Interstate/ interprovincial travel surveillance", + "meaning": "GENEPIO:0100275", + "is_a": "Domestic travel surveillance" + }, + "Intra-state/ intra-provincial travel surveillance": { + "text": "Intra-state/ intra-provincial travel surveillance", + "meaning": "GENEPIO:0100276", + "is_a": "Domestic travel surveillance" + }, + "International travel surveillance": { + "text": "International travel surveillance", + "meaning": "GENEPIO:0100014", + "is_a": "Travel-associated surveillance" + }, + "Surveillance of international border crossing by air travel or ground transport": { + "text": "Surveillance of international border crossing by air travel or ground transport", + "meaning": "GENEPIO:0100015", + "is_a": "International travel surveillance" + }, + "Surveillance of international border crossing by air travel": { + "text": "Surveillance of international border crossing by air travel", + "meaning": "GENEPIO:0100016", + "is_a": "International travel surveillance" + }, + "Surveillance of international border crossing by ground transport": { + "text": "Surveillance of international border crossing by ground transport", + "meaning": "GENEPIO:0100017", + "is_a": "International travel surveillance" + }, + "Surveillance from international worker testing": { + "text": "Surveillance from international worker testing", + "meaning": "GENEPIO:0100018", + "is_a": "International travel surveillance" + }, + "Cluster/Outbreak investigation": { + "text": "Cluster/Outbreak investigation", + "meaning": "GENEPIO:0100019" + }, + "Multi-jurisdictional outbreak investigation": { + "text": "Multi-jurisdictional outbreak investigation", + "meaning": "GENEPIO:0100020", + "is_a": "Cluster/Outbreak investigation" + }, + "Intra-jurisdictional outbreak investigation": { + "text": "Intra-jurisdictional outbreak investigation", + "meaning": "GENEPIO:0100021", + "is_a": "Cluster/Outbreak investigation" + }, + "Research": { + "text": "Research", + "meaning": "GENEPIO:0100022" + }, + "Viral passage experiment": { + "text": "Viral passage experiment", + "meaning": "GENEPIO:0100023", + "is_a": "Research" + }, + "Protocol testing experiment": { + "text": "Protocol testing experiment", + "meaning": "GENEPIO:0100024", + "is_a": "Research" + }, + "Retrospective sequencing": { + "text": "Retrospective sequencing", + "meaning": "GENEPIO:0100356" + } + } + }, + "specimen processing menu": { + "name": "specimen processing menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Virus passage": { + "text": "Virus passage", + "meaning": "GENEPIO:0100039" + }, + "RNA re-extraction (post RT-PCR)": { + "text": "RNA re-extraction (post RT-PCR)", + "meaning": "GENEPIO:0100040" + }, + "Specimens pooled": { + "text": "Specimens pooled", + "meaning": "OBI:0600016" + } + } + }, + "lab host menu": { + "name": "lab host menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "293/ACE2 cell line": { + "text": "293/ACE2 cell line", + "meaning": "GENEPIO:0100041" + }, + "Caco2 cell line": { + "text": "Caco2 cell line", + "meaning": "BTO:0000195" + }, + "Calu3 cell line": { + "text": "Calu3 cell line", + "meaning": "BTO:0002750" + }, + "EFK3B cell line": { + "text": "EFK3B cell line", + "meaning": "GENEPIO:0100042" + }, + "HEK293T cell line": { + "text": "HEK293T cell line", + "meaning": "BTO:0002181" + }, + "HRCE cell line": { + "text": "HRCE cell line", + "meaning": "GENEPIO:0100043" + }, + "Huh7 cell line": { + "text": "Huh7 cell line", + "meaning": "BTO:0001950" + }, + "LLCMk2 cell line": { + "text": "LLCMk2 cell line", + "meaning": "CLO:0007330" + }, + "MDBK cell line": { + "text": "MDBK cell line", + "meaning": "BTO:0000836" + }, + "NHBE cell line": { + "text": "NHBE cell line", + "meaning": "BTO:0002924" + }, + "PK-15 cell line": { + "text": "PK-15 cell line", + "meaning": "BTO:0001865" + }, + "RK-13 cell line": { + "text": "RK-13 cell line", + "meaning": "BTO:0002909" + }, + "U251 cell line": { + "text": "U251 cell line", + "meaning": "BTO:0002035" + }, + "Vero cell line": { + "text": "Vero cell line", + "meaning": "BTO:0001444" + }, + "Vero E6 cell line": { + "text": "Vero E6 cell line", + "meaning": "BTO:0004755", + "is_a": "Vero cell line" + }, + "VeroE6/TMPRSS2 cell line": { + "text": "VeroE6/TMPRSS2 cell line", + "meaning": "GENEPIO:0100044", + "is_a": "Vero E6 cell line" + } + } + }, + "host disease menu": { + "name": "host disease menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "COVID-19": { + "text": "COVID-19", + "meaning": "MONDO:0100096" + } + } + }, + "host age bin menu": { + "name": "host age bin menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "0 - 9": { + "text": "0 - 9", + "meaning": "GENEPIO:0100049" + }, + "10 - 19": { + "text": "10 - 19", + "meaning": "GENEPIO:0100050" + }, + "20 - 29": { + "text": "20 - 29", + "meaning": "GENEPIO:0100051" + }, + "30 - 39": { + "text": "30 - 39", + "meaning": "GENEPIO:0100052" + }, + "40 - 49": { + "text": "40 - 49", + "meaning": "GENEPIO:0100053" + }, + "50 - 59": { + "text": "50 - 59", + "meaning": "GENEPIO:0100054" + }, + "60 - 69": { + "text": "60 - 69", + "meaning": "GENEPIO:0100055" + }, + "70 - 79": { + "text": "70 - 79", + "meaning": "GENEPIO:0100056" + }, + "80 - 89": { + "text": "80 - 89", + "meaning": "GENEPIO:0100057" + }, + "90 - 99": { + "text": "90 - 99", + "meaning": "GENEPIO:0100058", + "exact_mappings": [ + "VirusSeq_Portal:90+" + ] + }, + "100+": { + "text": "100+", + "meaning": "GENEPIO:0100059", + "exact_mappings": [ + "VirusSeq_Portal:90+" + ] + } + } + }, + "host gender menu": { + "name": "host gender menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Female": { + "text": "Female", + "meaning": "NCIT:C46110" + }, + "Male": { + "text": "Male", + "meaning": "NCIT:C46109" + }, + "Non-binary gender": { + "text": "Non-binary gender", + "meaning": "GSSO:000132" + }, + "Transgender (assigned male at birth)": { + "text": "Transgender (assigned male at birth)", + "meaning": "GSSO:004004" + }, + "Transgender (assigned female at birth)": { + "text": "Transgender (assigned female at birth)", + "meaning": "GSSO:004005" + }, + "Undeclared": { + "text": "Undeclared", + "meaning": "NCIT:C110959" + } + } + }, + "exposure event menu": { + "name": "exposure event menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Mass Gathering": { + "text": "Mass Gathering", + "meaning": "GENEPIO:0100237" + }, + "Agricultural Event": { + "text": "Agricultural Event", + "meaning": "GENEPIO:0100240", + "is_a": "Mass Gathering" + }, + "Convention": { + "text": "Convention", + "meaning": "GENEPIO:0100238", + "is_a": "Mass Gathering" + }, + "Convocation": { + "text": "Convocation", + "meaning": "GENEPIO:0100239", + "is_a": "Mass Gathering" + }, + "Recreational Event": { + "text": "Recreational Event", + "meaning": "GENEPIO:0100417", + "is_a": "Mass Gathering" + }, + "Concert": { + "text": "Concert", + "meaning": "GENEPIO:0100418", + "is_a": "Recreational Event" + }, + "Sporting Event": { + "text": "Sporting Event", + "meaning": "GENEPIO:0100419", + "is_a": "Recreational Event" + }, + "Religious Gathering": { + "text": "Religious Gathering", + "meaning": "GENEPIO:0100241" + }, + "Mass": { + "text": "Mass", + "meaning": "GENEPIO:0100242", + "is_a": "Religious Gathering" + }, + "Social Gathering": { + "text": "Social Gathering", + "meaning": "PCO:0000033" + }, + "Baby Shower": { + "text": "Baby Shower", + "meaning": "PCO:0000039", + "is_a": "Social Gathering" + }, + "Community Event": { + "text": "Community Event", + "meaning": "PCO:0000034", + "is_a": "Social Gathering" + }, + "Family Gathering": { + "text": "Family Gathering", + "meaning": "GENEPIO:0100243", + "is_a": "Social Gathering" + }, + "Family Reunion": { + "text": "Family Reunion", + "meaning": "GENEPIO:0100244", + "is_a": "Family Gathering" + }, + "Funeral": { + "text": "Funeral", + "meaning": "GENEPIO:0100245", + "is_a": "Social Gathering" + }, + "Party": { + "text": "Party", + "meaning": "PCO:0000035", + "is_a": "Social Gathering" + }, + "Potluck": { + "text": "Potluck", + "meaning": "PCO:0000037", + "is_a": "Social Gathering" + }, + "Wedding": { + "text": "Wedding", + "meaning": "PCO:0000038", + "is_a": "Social Gathering" + }, + "Other exposure event": { + "text": "Other exposure event" + } + } + }, + "exposure contact level menu": { + "name": "exposure contact level menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Contact with infected individual": { + "text": "Contact with infected individual", + "meaning": "GENEPIO:0100357" + }, + "Direct contact (direct human-to-human contact)": { + "text": "Direct contact (direct human-to-human contact)", + "meaning": "TRANS:0000001", + "is_a": "Contact with infected individual" + }, + "Indirect contact": { + "text": "Indirect contact", + "meaning": "GENEPIO:0100246", + "is_a": "Contact with infected individual" + }, + "Close contact (face-to-face, no direct contact)": { + "text": "Close contact (face-to-face, no direct contact)", + "meaning": "GENEPIO:0100247", + "is_a": "Indirect contact" + }, + "Casual contact": { + "text": "Casual contact", + "meaning": "GENEPIO:0100248", + "is_a": "Indirect contact" + } + } + }, + "host role menu": { + "name": "host role menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Attendee": { + "text": "Attendee", + "meaning": "GENEPIO:0100249" + }, + "Student": { + "text": "Student", + "meaning": "OMRSE:00000058", + "is_a": "Attendee" + }, + "Patient": { + "text": "Patient", + "meaning": "OMRSE:00000030" + }, + "Inpatient": { + "text": "Inpatient", + "meaning": "NCIT:C25182", + "is_a": "Patient" + }, + "Outpatient": { + "text": "Outpatient", + "meaning": "NCIT:C28293", + "is_a": "Patient" + }, + "Passenger": { + "text": "Passenger", + "meaning": "GENEPIO:0100250" + }, + "Resident": { + "text": "Resident", + "meaning": "GENEPIO:0100251" + }, + "Visitor": { + "text": "Visitor", + "meaning": "GENEPIO:0100252" + }, + "Volunteer": { + "text": "Volunteer", + "meaning": "GENEPIO:0100253" + }, + "Work": { + "text": "Work", + "meaning": "GENEPIO:0100254" + }, + "Administrator": { + "text": "Administrator", + "meaning": "GENEPIO:0100255", + "is_a": "Work" + }, + "Child Care/Education Worker": { + "text": "Child Care/Education Worker", + "is_a": "Work" + }, + "Essential Worker": { + "text": "Essential Worker", + "is_a": "Work" + }, + "First Responder": { + "text": "First Responder", + "meaning": "GENEPIO:0100256", + "is_a": "Work" + }, + "Firefighter": { + "text": "Firefighter", + "meaning": "GENEPIO:0100257", + "is_a": "First Responder" + }, + "Paramedic": { + "text": "Paramedic", + "meaning": "GENEPIO:0100258", + "is_a": "First Responder" + }, + "Police Officer": { + "text": "Police Officer", + "meaning": "GENEPIO:0100259", + "is_a": "First Responder" + }, + "Healthcare Worker": { + "text": "Healthcare Worker", + "meaning": "GENEPIO:0100334", + "is_a": "Work" + }, + "Community Healthcare Worker": { + "text": "Community Healthcare Worker", + "meaning": "GENEPIO:0100420", + "is_a": "Healthcare Worker" + }, + "Laboratory Worker": { + "text": "Laboratory Worker", + "meaning": "GENEPIO:0100262", + "is_a": "Healthcare Worker" + }, + "Nurse": { + "text": "Nurse", + "meaning": "OMRSE:00000014", + "is_a": "Healthcare Worker" + }, + "Personal Care Aid": { + "text": "Personal Care Aid", + "meaning": "GENEPIO:0100263", + "is_a": "Healthcare Worker" + }, + "Pharmacist": { + "text": "Pharmacist", + "meaning": "GENEPIO:0100264", + "is_a": "Healthcare Worker" + }, + "Physician": { + "text": "Physician", + "meaning": "OMRSE:00000013", + "is_a": "Healthcare Worker" + }, + "Housekeeper": { + "text": "Housekeeper", + "meaning": "GENEPIO:0100260", + "is_a": "Work" + }, + "International worker": { + "text": "International worker", + "is_a": "Work" + }, + "Kitchen Worker": { + "text": "Kitchen Worker", + "meaning": "GENEPIO:0100261", + "is_a": "Work" + }, + "Rotational Worker": { + "text": "Rotational Worker", + "meaning": "GENEPIO:0100354", + "is_a": "Work" + }, + "Seasonal Worker": { + "text": "Seasonal Worker", + "meaning": "GENEPIO:0100355", + "is_a": "Work" + }, + "Transport Worker": { + "text": "Transport Worker", + "is_a": "Work" + }, + "Transport Truck Driver": { + "text": "Transport Truck Driver", + "is_a": "Transport Worker" + }, + "Veterinarian": { + "text": "Veterinarian", + "meaning": "GENEPIO:0100265", + "is_a": "Work" + }, + "Social role": { + "text": "Social role", + "meaning": "OMRSE:00000001" + }, + "Acquaintance of case": { + "text": "Acquaintance of case", + "meaning": "GENEPIO:0100266", + "is_a": "Social role" + }, + "Relative of case": { + "text": "Relative of case", + "meaning": "GENEPIO:0100267", + "is_a": "Social role" + }, + "Child of case": { + "text": "Child of case", + "meaning": "GENEPIO:0100268", + "is_a": "Relative of case" + }, + "Parent of case": { + "text": "Parent of case", + "meaning": "GENEPIO:0100269", + "is_a": "Relative of case" + }, + "Father of case": { + "text": "Father of case", + "meaning": "GENEPIO:0100270", + "is_a": "Parent of case" + }, + "Mother of case": { + "text": "Mother of case", + "meaning": "GENEPIO:0100271", + "is_a": "Parent of case" + }, + "Spouse of case": { + "text": "Spouse of case", + "meaning": "GENEPIO:0100272", + "is_a": "Social role" + }, + "Other Host Role": { + "text": "Other Host Role" + } + } + }, + "exposure setting menu": { + "name": "exposure setting menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Human Exposure": { + "text": "Human Exposure", + "meaning": "ECTO:3000005" + }, + "Contact with Known COVID-19 Case": { + "text": "Contact with Known COVID-19 Case", + "meaning": "GENEPIO:0100184", + "is_a": "Human Exposure" + }, + "Contact with Patient": { + "text": "Contact with Patient", + "meaning": "GENEPIO:0100185", + "is_a": "Human Exposure" + }, + "Contact with Probable COVID-19 Case": { + "text": "Contact with Probable COVID-19 Case", + "meaning": "GENEPIO:0100186", + "is_a": "Human Exposure" + }, + "Contact with Person with Acute Respiratory Illness": { + "text": "Contact with Person with Acute Respiratory Illness", + "meaning": "GENEPIO:0100187", + "is_a": "Human Exposure" + }, + "Contact with Person with Fever and/or Cough": { + "text": "Contact with Person with Fever and/or Cough", + "meaning": "GENEPIO:0100188", + "is_a": "Human Exposure" + }, + "Contact with Person who Recently Travelled": { + "text": "Contact with Person who Recently Travelled", + "meaning": "GENEPIO:0100189", + "is_a": "Human Exposure" + }, + "Occupational, Residency or Patronage Exposure": { + "text": "Occupational, Residency or Patronage Exposure", + "meaning": "GENEPIO:0100190" + }, + "Abbatoir": { + "text": "Abbatoir", + "meaning": "ECTO:1000033", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Animal Rescue": { + "text": "Animal Rescue", + "meaning": "GENEPIO:0100191", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Childcare": { + "text": "Childcare", + "meaning": "GENEPIO:0100192", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Daycare": { + "text": "Daycare", + "meaning": "GENEPIO:0100193", + "is_a": "Childcare" + }, + "Nursery": { + "text": "Nursery", + "meaning": "GENEPIO:0100194", + "is_a": "Childcare" + }, + "Community Service Centre": { + "text": "Community Service Centre", + "meaning": "GENEPIO:0100195", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Correctional Facility": { + "text": "Correctional Facility", + "meaning": "GENEPIO:0100196", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Dormitory": { + "text": "Dormitory", + "meaning": "GENEPIO:0100197", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Farm": { + "text": "Farm", + "meaning": "ECTO:1000034", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "First Nations Reserve": { + "text": "First Nations Reserve", + "meaning": "GENEPIO:0100198", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Funeral Home": { + "text": "Funeral Home", + "meaning": "GENEPIO:0100199", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Group Home": { + "text": "Group Home", + "meaning": "GENEPIO:0100200", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Healthcare Setting": { + "text": "Healthcare Setting", + "meaning": "GENEPIO:0100201", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Ambulance": { + "text": "Ambulance", + "meaning": "GENEPIO:0100202", + "is_a": "Healthcare Setting" + }, + "Acute Care Facility": { + "text": "Acute Care Facility", + "meaning": "GENEPIO:0100203", + "is_a": "Healthcare Setting" + }, + "Clinic": { + "text": "Clinic", + "meaning": "GENEPIO:0100204", + "is_a": "Healthcare Setting" + }, + "Community Healthcare (At-Home) Setting": { + "text": "Community Healthcare (At-Home) Setting", + "meaning": "GENEPIO:0100415", + "is_a": "Healthcare Setting" + }, + "Community Health Centre": { + "text": "Community Health Centre", + "meaning": "GENEPIO:0100205", + "is_a": "Healthcare Setting" + }, + "Hospital": { + "text": "Hospital", + "meaning": "ECTO:1000035", + "is_a": "Healthcare Setting" + }, + "Emergency Department": { + "text": "Emergency Department", + "meaning": "GENEPIO:0100206", + "is_a": "Hospital" + }, + "ICU": { + "text": "ICU", + "meaning": "GENEPIO:0100207", + "is_a": "Hospital" + }, + "Ward": { + "text": "Ward", + "meaning": "GENEPIO:0100208", + "is_a": "Hospital" + }, + "Laboratory": { + "text": "Laboratory", + "meaning": "ECTO:1000036", + "is_a": "Healthcare Setting" + }, + "Long-Term Care Facility": { + "text": "Long-Term Care Facility", + "meaning": "GENEPIO:0100209", + "is_a": "Healthcare Setting" + }, + "Pharmacy": { + "text": "Pharmacy", + "meaning": "GENEPIO:0100210", + "is_a": "Healthcare Setting" + }, + "Physician's Office": { + "text": "Physician's Office", + "meaning": "GENEPIO:0100211", + "is_a": "Healthcare Setting" + }, + "Household": { + "text": "Household", + "meaning": "GENEPIO:0100212", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Insecure Housing (Homeless)": { + "text": "Insecure Housing (Homeless)", + "meaning": "GENEPIO:0100213", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Occupational Exposure": { + "text": "Occupational Exposure", + "meaning": "GENEPIO:0100214", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Worksite": { + "text": "Worksite", + "meaning": "GENEPIO:0100215", + "is_a": "Occupational Exposure" + }, + "Office": { + "text": "Office", + "meaning": "ECTO:1000037", + "is_a": "Worksite" + }, + "Outdoors": { + "text": "Outdoors", + "meaning": "GENEPIO:0100216", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Camp/camping": { + "text": "Camp/camping", + "meaning": "ECTO:5000009", + "is_a": "Outdoors" + }, + "Hiking Trail": { + "text": "Hiking Trail", + "meaning": "GENEPIO:0100217", + "is_a": "Outdoors" + }, + "Hunting Ground": { + "text": "Hunting Ground", + "meaning": "ECTO:6000030", + "is_a": "Outdoors" + }, + "Ski Resort": { + "text": "Ski Resort", + "meaning": "GENEPIO:0100218", + "is_a": "Outdoors" + }, + "Petting zoo": { + "text": "Petting zoo", + "meaning": "ECTO:5000008", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Place of Worship": { + "text": "Place of Worship", + "meaning": "GENEPIO:0100220", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Church": { + "text": "Church", + "meaning": "GENEPIO:0100221", + "is_a": "Place of Worship" + }, + "Mosque": { + "text": "Mosque", + "meaning": "GENEPIO:0100222", + "is_a": "Place of Worship" + }, + "Temple": { + "text": "Temple", + "meaning": "GENEPIO:0100223", + "is_a": "Place of Worship" + }, + "Restaurant": { + "text": "Restaurant", + "meaning": "ECTO:1000040", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Retail Store": { + "text": "Retail Store", + "meaning": "ECTO:1000041", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "School": { + "text": "School", + "meaning": "GENEPIO:0100224", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Temporary Residence": { + "text": "Temporary Residence", + "meaning": "GENEPIO:0100225", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Homeless Shelter": { + "text": "Homeless Shelter", + "meaning": "GENEPIO:0100226", + "is_a": "Temporary Residence" + }, + "Hotel": { + "text": "Hotel", + "meaning": "GENEPIO:0100227", + "is_a": "Temporary Residence" + }, + "Veterinary Care Clinic": { + "text": "Veterinary Care Clinic", + "meaning": "GENEPIO:0100228", + "is_a": "Occupational, Residency or Patronage Exposure" + }, + "Travel Exposure": { + "text": "Travel Exposure", + "meaning": "GENEPIO:0100229" + }, + "Travelled on a Cruise Ship": { + "text": "Travelled on a Cruise Ship", + "meaning": "GENEPIO:0100230", + "is_a": "Travel Exposure" + }, + "Travelled on a Plane": { + "text": "Travelled on a Plane", + "meaning": "GENEPIO:0100231", + "is_a": "Travel Exposure" + }, + "Travelled on Ground Transport": { + "text": "Travelled on Ground Transport", + "meaning": "GENEPIO:0100232", + "is_a": "Travel Exposure" + }, + "Travelled outside Province/Territory": { + "text": "Travelled outside Province/Territory", + "meaning": "GENEPIO:0001118", + "is_a": "Travel Exposure" + }, + "Travelled outside Canada": { + "text": "Travelled outside Canada", + "meaning": "GENEPIO:0001119", + "is_a": "Travel Exposure" + }, + "Other Exposure Setting": { + "text": "Other Exposure Setting", + "meaning": "GENEPIO:0100235" + } + } + }, + "travel point of entry type menu": { + "name": "travel point of entry type menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Air": { + "text": "Air", + "meaning": "GENEPIO:0100408" + }, + "Land": { + "text": "Land", + "meaning": "GENEPIO:0100409" + } + } + }, + "border testing test day type menu": { + "name": "border testing test day type menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "day 1": { + "text": "day 1", + "meaning": "GENEPIO:0100410" + }, + "day 8": { + "text": "day 8", + "meaning": "GENEPIO:0100411" + }, + "day 10": { + "text": "day 10", + "meaning": "GENEPIO:0100412" + } + } + }, + "travel history availability menu": { + "name": "travel history availability menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Travel history available": { + "text": "Travel history available", + "meaning": "GENEPIO:0100650" + }, + "Domestic travel history available": { + "text": "Domestic travel history available", + "meaning": "GENEPIO:0100651", + "is_a": "Travel history available" + }, + "International travel history available": { + "text": "International travel history available", + "meaning": "GENEPIO:0100652", + "is_a": "Travel history available" + }, + "International and domestic travel history available": { + "text": "International and domestic travel history available", + "meaning": "GENEPIO:0100653", + "is_a": "Travel history available" + }, + "No travel history available": { + "text": "No travel history available", + "meaning": "GENEPIO:0100654" + } + } + }, + "sequencing instrument menu": { + "name": "sequencing instrument menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Illumina": { + "text": "Illumina", + "meaning": "GENEPIO:0100105" + }, + "Illumina Genome Analyzer": { + "text": "Illumina Genome Analyzer", + "meaning": "GENEPIO:0100106", + "is_a": "Illumina" + }, + "Illumina Genome Analyzer II": { + "text": "Illumina Genome Analyzer II", + "meaning": "GENEPIO:0100107", + "is_a": "Illumina Genome Analyzer" + }, + "Illumina Genome Analyzer IIx": { + "text": "Illumina Genome Analyzer IIx", + "meaning": "GENEPIO:0100108", + "is_a": "Illumina Genome Analyzer" + }, + "Illumina HiScanSQ": { + "text": "Illumina HiScanSQ", + "meaning": "GENEPIO:0100109", + "is_a": "Illumina" + }, + "Illumina HiSeq": { + "text": "Illumina HiSeq", + "meaning": "GENEPIO:0100110", + "is_a": "Illumina" + }, + "Illumina HiSeq X": { + "text": "Illumina HiSeq X", + "meaning": "GENEPIO:0100111", + "is_a": "Illumina HiSeq" + }, + "Illumina HiSeq X Five": { + "text": "Illumina HiSeq X Five", + "meaning": "GENEPIO:0100112", + "is_a": "Illumina HiSeq X" + }, + "Illumina HiSeq X Ten": { + "text": "Illumina HiSeq X Ten", + "meaning": "GENEPIO:0100113", + "is_a": "Illumina HiSeq X" + }, + "Illumina HiSeq 1000": { + "text": "Illumina HiSeq 1000", + "meaning": "GENEPIO:0100114", + "is_a": "Illumina HiSeq" + }, + "Illumina HiSeq 1500": { + "text": "Illumina HiSeq 1500", + "meaning": "GENEPIO:0100115", + "is_a": "Illumina HiSeq" + }, + "Illumina HiSeq 2000": { + "text": "Illumina HiSeq 2000", + "meaning": "GENEPIO:0100116", + "is_a": "Illumina HiSeq" + }, + "Illumina HiSeq 2500": { + "text": "Illumina HiSeq 2500", + "meaning": "GENEPIO:0100117", + "is_a": "Illumina HiSeq" + }, + "Illumina HiSeq 3000": { + "text": "Illumina HiSeq 3000", + "meaning": "GENEPIO:0100118", + "is_a": "Illumina HiSeq" + }, + "Illumina HiSeq 4000": { + "text": "Illumina HiSeq 4000", + "meaning": "GENEPIO:0100119", + "is_a": "Illumina HiSeq" + }, + "Illumina iSeq": { + "text": "Illumina iSeq", + "meaning": "GENEPIO:0100120", + "is_a": "Illumina" + }, + "Illumina iSeq 100": { + "text": "Illumina iSeq 100", + "meaning": "GENEPIO:0100121", + "is_a": "Illumina iSeq" + }, + "Illumina NovaSeq": { + "text": "Illumina NovaSeq", + "meaning": "GENEPIO:0100122", + "is_a": "Illumina" + }, + "Illumina NovaSeq 6000": { + "text": "Illumina NovaSeq 6000", + "meaning": "GENEPIO:0100123", + "is_a": "Illumina NovaSeq" + }, + "Illumina MiniSeq": { + "text": "Illumina MiniSeq", + "meaning": "GENEPIO:0100124", + "is_a": "Illumina" + }, + "Illumina MiSeq": { + "text": "Illumina MiSeq", + "meaning": "GENEPIO:0100125", + "is_a": "Illumina" + }, + "Illumina NextSeq": { + "text": "Illumina NextSeq", + "meaning": "GENEPIO:0100126", + "is_a": "Illumina" + }, + "Illumina NextSeq 500": { + "text": "Illumina NextSeq 500", + "meaning": "GENEPIO:0100127", + "is_a": "Illumina NextSeq" + }, + "Illumina NextSeq 550": { + "text": "Illumina NextSeq 550", + "meaning": "GENEPIO:0100128", + "is_a": "Illumina NextSeq" + }, + "Illumina NextSeq 2000": { + "text": "Illumina NextSeq 2000", + "meaning": "GENEPIO:0100129", + "is_a": "Illumina NextSeq" + }, + "Pacific Biosciences": { + "text": "Pacific Biosciences", + "meaning": "GENEPIO:0100130" + }, + "PacBio RS": { + "text": "PacBio RS", + "meaning": "GENEPIO:0100131", + "is_a": "Pacific Biosciences" + }, + "PacBio RS II": { + "text": "PacBio RS II", + "meaning": "GENEPIO:0100132", + "is_a": "Pacific Biosciences" + }, + "PacBio Sequel": { + "text": "PacBio Sequel", + "meaning": "GENEPIO:0100133", + "is_a": "Pacific Biosciences" + }, + "PacBio Sequel II": { + "text": "PacBio Sequel II", + "meaning": "GENEPIO:0100134", + "is_a": "Pacific Biosciences" + }, + "Ion Torrent": { + "text": "Ion Torrent", + "meaning": "GENEPIO:0100135" + }, + "Ion Torrent PGM": { + "text": "Ion Torrent PGM", + "meaning": "GENEPIO:0100136", + "is_a": "Ion Torrent" + }, + "Ion Torrent Proton": { + "text": "Ion Torrent Proton", + "meaning": "GENEPIO:0100137", + "is_a": "Ion Torrent" + }, + "Ion Torrent S5 XL": { + "text": "Ion Torrent S5 XL", + "meaning": "GENEPIO:0100138", + "is_a": "Ion Torrent" + }, + "Ion Torrent S5": { + "text": "Ion Torrent S5", + "meaning": "GENEPIO:0100139", + "is_a": "Ion Torrent" + }, + "Oxford Nanopore": { + "text": "Oxford Nanopore", + "meaning": "GENEPIO:0100140" + }, + "Oxford Nanopore GridION": { + "text": "Oxford Nanopore GridION", + "meaning": "GENEPIO:0100141", + "is_a": "Oxford Nanopore" + }, + "Oxford Nanopore MinION": { + "text": "Oxford Nanopore MinION", + "meaning": "GENEPIO:0100142", + "is_a": "Oxford Nanopore" + }, + "Oxford Nanopore PromethION": { + "text": "Oxford Nanopore PromethION", + "meaning": "GENEPIO:0100143", + "is_a": "Oxford Nanopore" + }, + "BGI Genomics": { + "text": "BGI Genomics", + "meaning": "GENEPIO:0100144" + }, + "BGI Genomics BGISEQ-500": { + "text": "BGI Genomics BGISEQ-500", + "meaning": "GENEPIO:0100145", + "is_a": "BGI Genomics" + }, + "MGI": { + "text": "MGI", + "meaning": "GENEPIO:0100146" + }, + "MGI DNBSEQ-T7": { + "text": "MGI DNBSEQ-T7", + "meaning": "GENEPIO:0100147", + "is_a": "MGI" + }, + "MGI DNBSEQ-G400": { + "text": "MGI DNBSEQ-G400", + "meaning": "GENEPIO:0100148", + "is_a": "MGI" + }, + "MGI DNBSEQ-G400 FAST": { + "text": "MGI DNBSEQ-G400 FAST", + "meaning": "GENEPIO:0100149", + "is_a": "MGI" + }, + "MGI DNBSEQ-G50": { + "text": "MGI DNBSEQ-G50", + "meaning": "GENEPIO:0100150", + "is_a": "MGI" + } + } + }, + "gene name menu": { + "name": "gene name menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "E gene (orf4)": { + "text": "E gene (orf4)", + "meaning": "GENEPIO:0100151", + "exact_mappings": [ + "CNPHI:E gene", + "BIOSAMPLE:E (orf4)" + ] + }, + "M gene (orf5)": { + "text": "M gene (orf5)", + "meaning": "GENEPIO:0100152", + "exact_mappings": [ + "BIOSAMPLE:M (orf5)" + ] + }, + "N gene (orf9)": { + "text": "N gene (orf9)", + "meaning": "GENEPIO:0100153", + "exact_mappings": [ + "BIOSAMPLE:N (orf9)" + ] + }, + "Spike gene (orf2)": { + "text": "Spike gene (orf2)", + "meaning": "GENEPIO:0100154", + "exact_mappings": [ + "BIOSAMPLE:S (orf2)" + ] + }, + "orf1ab (rep)": { + "text": "orf1ab (rep)", + "meaning": "GENEPIO:0100155", + "exact_mappings": [ + "BIOSAMPLE:orf1ab (rep)" + ] + }, + "orf1a (pp1a)": { + "text": "orf1a (pp1a)", + "meaning": "GENEPIO:0100156", + "is_a": "orf1ab (rep)", + "exact_mappings": [ + "BIOSAMPLE:orf1a (pp1a)" + ] + }, + "nsp11": { + "text": "nsp11", + "meaning": "GENEPIO:0100157", + "is_a": "orf1a (pp1a)", + "exact_mappings": [ + "BIOSAMPLE:nsp11" + ] + }, + "nsp1": { + "text": "nsp1", + "meaning": "GENEPIO:0100158", + "is_a": "orf1ab (rep)", + "exact_mappings": [ + "BIOSAMPLE:nsp1" + ] + }, + "nsp2": { + "text": "nsp2", + "meaning": "GENEPIO:0100159", + "is_a": "orf1ab (rep)", + "exact_mappings": [ + "BIOSAMPLE:nsp2" + ] + }, + "nsp3": { + "text": "nsp3", + "meaning": "GENEPIO:0100160", + "is_a": "orf1ab (rep)", + "exact_mappings": [ + "BIOSAMPLE:nsp3" + ] + }, + "nsp4": { + "text": "nsp4", + "meaning": "GENEPIO:0100161", + "is_a": "orf1ab (rep)", + "exact_mappings": [ + "BIOSAMPLE:nsp4" + ] + }, + "nsp5": { + "text": "nsp5", + "meaning": "GENEPIO:0100162", + "is_a": "orf1ab (rep)", + "exact_mappings": [ + "BIOSAMPLE:nsp5" + ] + }, + "nsp6": { + "text": "nsp6", + "meaning": "GENEPIO:0100163", + "is_a": "orf1ab (rep)", + "exact_mappings": [ + "BIOSAMPLE:nsp6" + ] + }, + "nsp7": { + "text": "nsp7", + "meaning": "GENEPIO:0100164", + "is_a": "orf1ab (rep)", + "exact_mappings": [ + "BIOSAMPLE:nsp7" + ] + }, + "nsp8": { + "text": "nsp8", + "meaning": "GENEPIO:0100165", + "is_a": "orf1ab (rep)", + "exact_mappings": [ + "BIOSAMPLE:nsp8" + ] + }, + "nsp9": { + "text": "nsp9", + "meaning": "GENEPIO:0100166", + "is_a": "orf1ab (rep)", + "exact_mappings": [ + "BIOSAMPLE:nsp9" + ] + }, + "nsp10": { + "text": "nsp10", + "meaning": "GENEPIO:0100167", + "is_a": "orf1ab (rep)", + "exact_mappings": [ + "BIOSAMPLE:nsp10" + ] + }, + "RdRp gene (nsp12)": { + "text": "RdRp gene (nsp12)", + "meaning": "GENEPIO:0100168", + "is_a": "orf1ab (rep)", + "exact_mappings": [ + "BIOSAMPLE:nsp12 (RdRp)" + ] + }, + "hel gene (nsp13)": { + "text": "hel gene (nsp13)", + "meaning": "GENEPIO:0100169", + "is_a": "orf1ab (rep)", + "exact_mappings": [ + "BIOSAMPLE:nsp13 (Hel)" + ] + }, + "exoN gene (nsp14)": { + "text": "exoN gene (nsp14)", + "meaning": "GENEPIO:0100170", + "is_a": "orf1ab (rep)", + "exact_mappings": [ + "BIOSAMPLE:nsp14 (ExoN)" + ] + }, + "nsp15": { + "text": "nsp15", + "meaning": "GENEPIO:0100171", + "is_a": "orf1ab (rep)", + "exact_mappings": [ + "BIOSAMPLE:nsp15" + ] + }, + "nsp16": { + "text": "nsp16", + "meaning": "GENEPIO:0100172", + "is_a": "orf1ab (rep)", + "exact_mappings": [ + "BIOSAMPLE:nsp16" + ] + }, + "orf3a": { + "text": "orf3a", + "meaning": "GENEPIO:0100173", + "exact_mappings": [ + "BIOSAMPLE:orf3a" + ] + }, + "orf3b": { + "text": "orf3b", + "meaning": "GENEPIO:0100174", + "exact_mappings": [ + "BIOSAMPLE:orf3b" + ] + }, + "orf6 (ns6)": { + "text": "orf6 (ns6)", + "meaning": "GENEPIO:0100175", + "exact_mappings": [ + "BIOSAMPLE:orf6 (ns6)" + ] + }, + "orf7a": { + "text": "orf7a", + "meaning": "GENEPIO:0100176", + "exact_mappings": [ + "BIOSAMPLE:orf7a" + ] + }, + "orf7b (ns7b)": { + "text": "orf7b (ns7b)", + "meaning": "GENEPIO:0100177", + "exact_mappings": [ + "BIOSAMPLE:orf7b (ns7b)" + ] + }, + "orf8 (ns8)": { + "text": "orf8 (ns8)", + "meaning": "GENEPIO:0100178", + "exact_mappings": [ + "BIOSAMPLE:orf8 (ns8)" + ] + }, + "orf9b": { + "text": "orf9b", + "meaning": "GENEPIO:0100179", + "exact_mappings": [ + "BIOSAMPLE:orf9b" + ] + }, + "orf9c": { + "text": "orf9c", + "meaning": "GENEPIO:0100180", + "exact_mappings": [ + "BIOSAMPLE:orf9c" + ] + }, + "orf10": { + "text": "orf10", + "meaning": "GENEPIO:0100181", + "exact_mappings": [ + "BIOSAMPLE:orf10" + ] + }, + "orf14": { + "text": "orf14", + "meaning": "GENEPIO:0100182", + "exact_mappings": [ + "BIOSAMPLE:orf14" + ] + }, + "SARS-COV-2 5' UTR": { + "text": "SARS-COV-2 5' UTR", + "meaning": "GENEPIO:0100183" + } + } + }, + "sequence submitted by menu": { + "name": "sequence submitted by menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Alberta Precision Labs (APL)": { + "text": "Alberta Precision Labs (APL)" + }, + "Alberta ProvLab North (APLN)": { + "text": "Alberta ProvLab North (APLN)", + "is_a": "Alberta Precision Labs (APL)" + }, + "Alberta ProvLab South (APLS)": { + "text": "Alberta ProvLab South (APLS)", + "is_a": "Alberta Precision Labs (APL)" + }, + "BCCDC Public Health Laboratory": { + "text": "BCCDC Public Health Laboratory" + }, + "Canadore College": { + "text": "Canadore College" + }, + "The Centre for Applied Genomics (TCAG)": { + "text": "The Centre for Applied Genomics (TCAG)" + }, + "Dynacare": { + "text": "Dynacare" + }, + "Dynacare (Brampton)": { + "text": "Dynacare (Brampton)" + }, + "Dynacare (Manitoba)": { + "text": "Dynacare (Manitoba)" + }, + "The Hospital for Sick Children (SickKids)": { + "text": "The Hospital for Sick Children (SickKids)" + }, + "Laboratoire de santé publique du Québec (LSPQ)": { + "text": "Laboratoire de santé publique du Québec (LSPQ)" + }, + "Manitoba Cadham Provincial Laboratory": { + "text": "Manitoba Cadham Provincial Laboratory" + }, + "McGill University": { + "text": "McGill University" + }, + "McMaster University": { + "text": "McMaster University" + }, + "National Microbiology Laboratory (NML)": { + "text": "National Microbiology Laboratory (NML)" + }, + "New Brunswick - Vitalité Health Network": { + "text": "New Brunswick - Vitalité Health Network" + }, + "Newfoundland and Labrador - Eastern Health": { + "text": "Newfoundland and Labrador - Eastern Health" + }, + "Newfoundland and Labrador - Newfoundland and Labrador Health Services": { + "text": "Newfoundland and Labrador - Newfoundland and Labrador Health Services" + }, + "Nova Scotia Health Authority": { + "text": "Nova Scotia Health Authority" + }, + "Ontario Institute for Cancer Research (OICR)": { + "text": "Ontario Institute for Cancer Research (OICR)" + }, + "Prince Edward Island - Health PEI": { + "text": "Prince Edward Island - Health PEI" + }, + "Public Health Ontario (PHO)": { + "text": "Public Health Ontario (PHO)" + }, + "Queen's University / Kingston Health Sciences Centre": { + "text": "Queen's University / Kingston Health Sciences Centre" + }, + "Saskatchewan - Roy Romanow Provincial Laboratory (RRPL)": { + "text": "Saskatchewan - Roy Romanow Provincial Laboratory (RRPL)" + }, + "Sunnybrook Health Sciences Centre": { + "text": "Sunnybrook Health Sciences Centre" + }, + "Thunder Bay Regional Health Sciences Centre": { + "text": "Thunder Bay Regional Health Sciences Centre" + } + } + }, + "sample collected by menu": { + "name": "sample collected by menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Alberta Precision Labs (APL)": { + "text": "Alberta Precision Labs (APL)" + }, + "Alberta ProvLab North (APLN)": { + "text": "Alberta ProvLab North (APLN)", + "is_a": "Alberta Precision Labs (APL)" + }, + "Alberta ProvLab South (APLS)": { + "text": "Alberta ProvLab South (APLS)", + "is_a": "Alberta Precision Labs (APL)" + }, + "BCCDC Public Health Laboratory": { + "text": "BCCDC Public Health Laboratory" + }, + "Dynacare": { + "text": "Dynacare" + }, + "Dynacare (Manitoba)": { + "text": "Dynacare (Manitoba)" + }, + "Dynacare (Brampton)": { + "text": "Dynacare (Brampton)" + }, + "Eastern Ontario Regional Laboratory Association": { + "text": "Eastern Ontario Regional Laboratory Association" + }, + "Hamilton Health Sciences": { + "text": "Hamilton Health Sciences" + }, + "The Hospital for Sick Children (SickKids)": { + "text": "The Hospital for Sick Children (SickKids)" + }, + "Laboratoire de santé publique du Québec (LSPQ)": { + "text": "Laboratoire de santé publique du Québec (LSPQ)" + }, + "Lake of the Woods District Hospital - Ontario": { + "text": "Lake of the Woods District Hospital - Ontario" + }, + "LifeLabs": { + "text": "LifeLabs" + }, + "LifeLabs (Ontario)": { + "text": "LifeLabs (Ontario)" + }, + "Manitoba Cadham Provincial Laboratory": { + "text": "Manitoba Cadham Provincial Laboratory" + }, + "McMaster University": { + "text": "McMaster University" + }, + "Mount Sinai Hospital": { + "text": "Mount Sinai Hospital" + }, + "National Microbiology Laboratory (NML)": { + "text": "National Microbiology Laboratory (NML)" + }, + "New Brunswick - Vitalité Health Network": { + "text": "New Brunswick - Vitalité Health Network" + }, + "Newfoundland and Labrador - Eastern Health": { + "text": "Newfoundland and Labrador - Eastern Health" + }, + "Newfoundland and Labrador - Newfoundland and Labrador Health Services": { + "text": "Newfoundland and Labrador - Newfoundland and Labrador Health Services" + }, + "Nova Scotia Health Authority": { + "text": "Nova Scotia Health Authority" + }, + "Nunavut": { + "text": "Nunavut" + }, + "Ontario Institute for Cancer Research (OICR)": { + "text": "Ontario Institute for Cancer Research (OICR)" + }, + "Prince Edward Island - Health PEI": { + "text": "Prince Edward Island - Health PEI" + }, + "Public Health Ontario (PHO)": { + "text": "Public Health Ontario (PHO)" + }, + "Queen's University / Kingston Health Sciences Centre": { + "text": "Queen's University / Kingston Health Sciences Centre" + }, + "Saskatchewan - Roy Romanow Provincial Laboratory (RRPL)": { + "text": "Saskatchewan - Roy Romanow Provincial Laboratory (RRPL)" + }, + "Shared Hospital Laboratory": { + "text": "Shared Hospital Laboratory" + }, + "St. John's Rehab at Sunnybrook Hospital": { + "text": "St. John's Rehab at Sunnybrook Hospital" + }, + "Switch Health": { + "text": "Switch Health" + }, + "Sunnybrook Health Sciences Centre": { + "text": "Sunnybrook Health Sciences Centre" + }, + "Unity Health Toronto": { + "text": "Unity Health Toronto" + }, + "William Osler Health System": { + "text": "William Osler Health System" + } + } + }, + "geo_loc_name (country) menu": { + "name": "geo_loc_name (country) menu", + "from_schema": "https://example.com/CanCOGeN_Covid-19", + "permissible_values": { + "Afghanistan": { + "text": "Afghanistan", + "meaning": "GAZ:00006882" + }, + "Albania": { + "text": "Albania", + "meaning": "GAZ:00002953" + }, + "Algeria": { + "text": "Algeria", + "meaning": "GAZ:00000563" + }, + "American Samoa": { + "text": "American Samoa", + "meaning": "GAZ:00003957" + }, + "Andorra": { + "text": "Andorra", + "meaning": "GAZ:00002948" + }, + "Angola": { + "text": "Angola", + "meaning": "GAZ:00001095" + }, + "Anguilla": { + "text": "Anguilla", + "meaning": "GAZ:00009159" + }, + "Antarctica": { + "text": "Antarctica", + "meaning": "GAZ:00000462" + }, + "Antigua and Barbuda": { + "text": "Antigua and Barbuda", + "meaning": "GAZ:00006883" + }, + "Argentina": { + "text": "Argentina", + "meaning": "GAZ:00002928" + }, + "Armenia": { + "text": "Armenia", + "meaning": "GAZ:00004094" + }, + "Aruba": { + "text": "Aruba", + "meaning": "GAZ:00004025" + }, + "Ashmore and Cartier Islands": { + "text": "Ashmore and Cartier Islands", + "meaning": "GAZ:00005901" + }, + "Australia": { + "text": "Australia", + "meaning": "GAZ:00000463" + }, + "Austria": { + "text": "Austria", + "meaning": "GAZ:00002942" + }, + "Azerbaijan": { + "text": "Azerbaijan", + "meaning": "GAZ:00004941" + }, + "Bahamas": { + "text": "Bahamas", + "meaning": "GAZ:00002733" + }, + "Bahrain": { + "text": "Bahrain", + "meaning": "GAZ:00005281" + }, + "Baker Island": { + "text": "Baker Island", + "meaning": "GAZ:00007117" + }, + "Bangladesh": { + "text": "Bangladesh", + "meaning": "GAZ:00003750" + }, + "Barbados": { + "text": "Barbados", + "meaning": "GAZ:00001251" + }, + "Bassas da India": { + "text": "Bassas da India", + "meaning": "GAZ:00005810" + }, + "Belarus": { + "text": "Belarus", + "meaning": "GAZ:00006886" + }, + "Belgium": { + "text": "Belgium", + "meaning": "GAZ:00002938" + }, + "Belize": { + "text": "Belize", + "meaning": "GAZ:00002934" + }, + "Benin": { + "text": "Benin", + "meaning": "GAZ:00000904" + }, + "Bermuda": { + "text": "Bermuda", + "meaning": "GAZ:00001264" + }, + "Bhutan": { + "text": "Bhutan", + "meaning": "GAZ:00003920" + }, + "Bolivia": { + "text": "Bolivia", + "meaning": "GAZ:00002511" + }, + "Borneo": { + "text": "Borneo", + "meaning": "GAZ:00025355" + }, + "Bosnia and Herzegovina": { + "text": "Bosnia and Herzegovina", + "meaning": "GAZ:00006887" + }, + "Botswana": { + "text": "Botswana", + "meaning": "GAZ:00001097" + }, + "Bouvet Island": { + "text": "Bouvet Island", + "meaning": "GAZ:00001453" + }, + "Brazil": { + "text": "Brazil", + "meaning": "GAZ:00002828" + }, + "British Virgin Islands": { + "text": "British Virgin Islands", + "meaning": "GAZ:00003961" + }, + "Brunei": { + "text": "Brunei", + "meaning": "GAZ:00003901" + }, + "Bulgaria": { + "text": "Bulgaria", + "meaning": "GAZ:00002950" + }, + "Burkina Faso": { + "text": "Burkina Faso", + "meaning": "GAZ:00000905" + }, + "Burundi": { + "text": "Burundi", + "meaning": "GAZ:00001090" + }, + "Cambodia": { + "text": "Cambodia", + "meaning": "GAZ:00006888" + }, + "Cameroon": { + "text": "Cameroon", + "meaning": "GAZ:00001093" + }, + "Canada": { + "text": "Canada", + "meaning": "GAZ:00002560" + }, + "Cape Verde": { + "text": "Cape Verde", + "meaning": "GAZ:00001227" + }, + "Cayman Islands": { + "text": "Cayman Islands", + "meaning": "GAZ:00003986" + }, + "Central African Republic": { + "text": "Central African Republic", + "meaning": "GAZ:00001089" + }, + "Chad": { + "text": "Chad", + "meaning": "GAZ:00000586" + }, + "Chile": { + "text": "Chile", + "meaning": "GAZ:00002825" + }, + "China": { + "text": "China", + "meaning": "GAZ:00002845" + }, + "Christmas Island": { + "text": "Christmas Island", + "meaning": "GAZ:00005915" + }, + "Clipperton Island": { + "text": "Clipperton Island", + "meaning": "GAZ:00005838" + }, + "Cocos Islands": { + "text": "Cocos Islands", + "meaning": "GAZ:00009721" + }, + "Colombia": { + "text": "Colombia", + "meaning": "GAZ:00002929" + }, + "Comoros": { + "text": "Comoros", + "meaning": "GAZ:00005820" + }, + "Cook Islands": { + "text": "Cook Islands", + "meaning": "GAZ:00053798" + }, + "Coral Sea Islands": { + "text": "Coral Sea Islands", + "meaning": "GAZ:00005917" + }, + "Costa Rica": { + "text": "Costa Rica", + "meaning": "GAZ:00002901" + }, + "Cote d'Ivoire": { + "text": "Cote d'Ivoire", + "meaning": "GAZ:00000906" + }, + "Croatia": { + "text": "Croatia", + "meaning": "GAZ:00002719" + }, + "Cuba": { + "text": "Cuba", + "meaning": "GAZ:00003762" + }, + "Curacao": { + "text": "Curacao", + "meaning": "GAZ:00012582" + }, + "Cyprus": { + "text": "Cyprus", + "meaning": "GAZ:00004006" + }, + "Czech Republic": { + "text": "Czech Republic", + "meaning": "GAZ:00002954" + }, + "Democratic Republic of the Congo": { + "text": "Democratic Republic of the Congo", + "meaning": "GAZ:00001086" + }, + "Denmark": { + "text": "Denmark", + "meaning": "GAZ:00005852" + }, + "Djibouti": { + "text": "Djibouti", + "meaning": "GAZ:00000582" + }, + "Dominica": { + "text": "Dominica", + "meaning": "GAZ:00006890" + }, + "Dominican Republic": { + "text": "Dominican Republic", + "meaning": "GAZ:00003952" + }, + "Ecuador": { + "text": "Ecuador", + "meaning": "GAZ:00002912" + }, + "Egypt": { + "text": "Egypt", + "meaning": "GAZ:00003934" + }, + "El Salvador": { + "text": "El Salvador", + "meaning": "GAZ:00002935" + }, + "Equatorial Guinea": { + "text": "Equatorial Guinea", + "meaning": "GAZ:00001091" + }, + "Eritrea": { + "text": "Eritrea", + "meaning": "GAZ:00000581" + }, + "Estonia": { + "text": "Estonia", + "meaning": "GAZ:00002959" + }, + "Eswatini": { + "text": "Eswatini", + "meaning": "GAZ:00001099" + }, + "Ethiopia": { + "text": "Ethiopia", + "meaning": "GAZ:00000567" + }, + "Europa Island": { + "text": "Europa Island", + "meaning": "GAZ:00005811" + }, + "Falkland Islands (Islas Malvinas)": { + "text": "Falkland Islands (Islas Malvinas)", + "meaning": "GAZ:00001412" + }, + "Faroe Islands": { + "text": "Faroe Islands", + "meaning": "GAZ:00059206" + }, + "Fiji": { + "text": "Fiji", + "meaning": "GAZ:00006891" + }, + "Finland": { + "text": "Finland", + "meaning": "GAZ:00002937" + }, + "France": { + "text": "France", + "meaning": "GAZ:00003940" + }, + "French Guiana": { + "text": "French Guiana", + "meaning": "GAZ:00002516" + }, + "French Polynesia": { + "text": "French Polynesia", + "meaning": "GAZ:00002918" + }, + "French Southern and Antarctic Lands": { + "text": "French Southern and Antarctic Lands", + "meaning": "GAZ:00003753" + }, + "Gabon": { + "text": "Gabon", + "meaning": "GAZ:00001092" + }, + "Gambia": { + "text": "Gambia", + "meaning": "GAZ:00000907" + }, + "Gaza Strip": { + "text": "Gaza Strip", + "meaning": "GAZ:00009571" + }, + "Georgia": { + "text": "Georgia", + "meaning": "GAZ:00004942" + }, + "Germany": { + "text": "Germany", + "meaning": "GAZ:00002646" + }, + "Ghana": { + "text": "Ghana", + "meaning": "GAZ:00000908" + }, + "Gibraltar": { + "text": "Gibraltar", + "meaning": "GAZ:00003987" + }, + "Glorioso Islands": { + "text": "Glorioso Islands", + "meaning": "GAZ:00005808" + }, + "Greece": { + "text": "Greece", + "meaning": "GAZ:00002945" + }, + "Greenland": { + "text": "Greenland", + "meaning": "GAZ:00001507" + }, + "Grenada": { + "text": "Grenada", + "meaning": "GAZ:02000573" + }, + "Guadeloupe": { + "text": "Guadeloupe", + "meaning": "GAZ:00067142" + }, + "Guam": { + "text": "Guam", + "meaning": "GAZ:00003706" + }, + "Guatemala": { + "text": "Guatemala", + "meaning": "GAZ:00002936" + }, + "Guernsey": { + "text": "Guernsey", + "meaning": "GAZ:00001550" + }, + "Guinea": { + "text": "Guinea", + "meaning": "GAZ:00000909" + }, + "Guinea-Bissau": { + "text": "Guinea-Bissau", + "meaning": "GAZ:00000910" + }, + "Guyana": { + "text": "Guyana", + "meaning": "GAZ:00002522" + }, + "Haiti": { + "text": "Haiti", + "meaning": "GAZ:00003953" + }, + "Heard Island and McDonald Islands": { + "text": "Heard Island and McDonald Islands", + "meaning": "GAZ:00009718" + }, + "Honduras": { + "text": "Honduras", + "meaning": "GAZ:00002894" + }, + "Hong Kong": { + "text": "Hong Kong", + "meaning": "GAZ:00003203" + }, + "Howland Island": { + "text": "Howland Island", + "meaning": "GAZ:00007120" + }, + "Hungary": { + "text": "Hungary", + "meaning": "GAZ:00002952" + }, + "Iceland": { + "text": "Iceland", + "meaning": "GAZ:00000843" + }, + "India": { + "text": "India", + "meaning": "GAZ:00002839" + }, + "Indonesia": { + "text": "Indonesia", + "meaning": "GAZ:00003727" + }, + "Iran": { + "text": "Iran", + "meaning": "GAZ:00004474" + }, + "Iraq": { + "text": "Iraq", + "meaning": "GAZ:00004483" + }, + "Ireland": { + "text": "Ireland", + "meaning": "GAZ:00002943" + }, + "Isle of Man": { + "text": "Isle of Man", + "meaning": "GAZ:00052477" + }, + "Israel": { + "text": "Israel", + "meaning": "GAZ:00002476" + }, + "Italy": { + "text": "Italy", + "meaning": "GAZ:00002650" + }, + "Jamaica": { + "text": "Jamaica", + "meaning": "GAZ:00003781" + }, + "Jan Mayen": { + "text": "Jan Mayen", + "meaning": "GAZ:00005853" + }, + "Japan": { + "text": "Japan", + "meaning": "GAZ:00002747" + }, + "Jarvis Island": { + "text": "Jarvis Island", + "meaning": "GAZ:00007118" + }, + "Jersey": { + "text": "Jersey", + "meaning": "GAZ:00001551" + }, + "Johnston Atoll": { + "text": "Johnston Atoll", + "meaning": "GAZ:00007114" + }, + "Jordan": { + "text": "Jordan", + "meaning": "GAZ:00002473" + }, + "Juan de Nova Island": { + "text": "Juan de Nova Island", + "meaning": "GAZ:00005809" + }, + "Kazakhstan": { + "text": "Kazakhstan", + "meaning": "GAZ:00004999" + }, + "Kenya": { + "text": "Kenya", + "meaning": "GAZ:00001101" + }, + "Kerguelen Archipelago": { + "text": "Kerguelen Archipelago", + "meaning": "GAZ:00005682" + }, + "Kingman Reef": { + "text": "Kingman Reef", + "meaning": "GAZ:00007116" + }, + "Kiribati": { + "text": "Kiribati", + "meaning": "GAZ:00006894" + }, + "Kosovo": { + "text": "Kosovo", + "meaning": "GAZ:00011337" + }, + "Kuwait": { + "text": "Kuwait", + "meaning": "GAZ:00005285" + }, + "Kyrgyzstan": { + "text": "Kyrgyzstan", + "meaning": "GAZ:00006893" + }, + "Laos": { + "text": "Laos", + "meaning": "GAZ:00006889" + }, + "Latvia": { + "text": "Latvia", + "meaning": "GAZ:00002958" + }, + "Lebanon": { + "text": "Lebanon", + "meaning": "GAZ:00002478" + }, + "Lesotho": { + "text": "Lesotho", + "meaning": "GAZ:00001098" + }, + "Liberia": { + "text": "Liberia", + "meaning": "GAZ:00000911" + }, + "Libya": { + "text": "Libya", + "meaning": "GAZ:00000566" + }, + "Liechtenstein": { + "text": "Liechtenstein", + "meaning": "GAZ:00003858" + }, + "Line Islands": { + "text": "Line Islands", + "meaning": "GAZ:00007144" + }, + "Lithuania": { + "text": "Lithuania", + "meaning": "GAZ:00002960" + }, + "Luxembourg": { + "text": "Luxembourg", + "meaning": "GAZ:00002947" + }, + "Macau": { + "text": "Macau", + "meaning": "GAZ:00003202" + }, + "Madagascar": { + "text": "Madagascar", + "meaning": "GAZ:00001108" + }, + "Malawi": { + "text": "Malawi", + "meaning": "GAZ:00001105" + }, + "Malaysia": { + "text": "Malaysia", + "meaning": "GAZ:00003902" + }, + "Maldives": { + "text": "Maldives", + "meaning": "GAZ:00006924" + }, + "Mali": { + "text": "Mali", + "meaning": "GAZ:00000584" + }, + "Malta": { + "text": "Malta", + "meaning": "GAZ:00004017" + }, + "Marshall Islands": { + "text": "Marshall Islands", + "meaning": "GAZ:00007161" + }, + "Martinique": { + "text": "Martinique", + "meaning": "GAZ:00067143" + }, + "Mauritania": { + "text": "Mauritania", + "meaning": "GAZ:00000583" + }, + "Mauritius": { + "text": "Mauritius", + "meaning": "GAZ:00003745" + }, + "Mayotte": { + "text": "Mayotte", + "meaning": "GAZ:00003943" + }, + "Mexico": { + "text": "Mexico", + "meaning": "GAZ:00002852" + }, + "Micronesia": { + "text": "Micronesia", + "meaning": "GAZ:00005862" + }, + "Midway Islands": { + "text": "Midway Islands", + "meaning": "GAZ:00007112" + }, + "Moldova": { + "text": "Moldova", + "meaning": "GAZ:00003897" + }, + "Monaco": { + "text": "Monaco", + "meaning": "GAZ:00003857" + }, + "Mongolia": { + "text": "Mongolia", + "meaning": "GAZ:00008744" + }, + "Montenegro": { + "text": "Montenegro", + "meaning": "GAZ:00006898" + }, + "Montserrat": { + "text": "Montserrat", + "meaning": "GAZ:00003988" + }, + "Morocco": { + "text": "Morocco", + "meaning": "GAZ:00000565" + }, + "Mozambique": { + "text": "Mozambique", + "meaning": "GAZ:00001100" + }, + "Myanmar": { + "text": "Myanmar", + "meaning": "GAZ:00006899" + }, + "Namibia": { + "text": "Namibia", + "meaning": "GAZ:00001096" + }, + "Nauru": { + "text": "Nauru", + "meaning": "GAZ:00006900" + }, + "Navassa Island": { + "text": "Navassa Island", + "meaning": "GAZ:00007119" + }, + "Nepal": { + "text": "Nepal", + "meaning": "GAZ:00004399" + }, + "Netherlands": { + "text": "Netherlands", + "meaning": "GAZ:00002946" + }, + "New Caledonia": { + "text": "New Caledonia", + "meaning": "GAZ:00005206" + }, + "New Zealand": { + "text": "New Zealand", + "meaning": "GAZ:00000469" + }, + "Nicaragua": { + "text": "Nicaragua", + "meaning": "GAZ:00002978" + }, + "Niger": { + "text": "Niger", + "meaning": "GAZ:00000585" + }, + "Nigeria": { + "text": "Nigeria", + "meaning": "GAZ:00000912" + }, + "Niue": { + "text": "Niue", + "meaning": "GAZ:00006902" + }, + "Norfolk Island": { + "text": "Norfolk Island", + "meaning": "GAZ:00005908" + }, + "North Korea": { + "text": "North Korea", + "meaning": "GAZ:00002801" + }, + "North Macedonia": { + "text": "North Macedonia", + "meaning": "GAZ:00006895" + }, + "North Sea": { + "text": "North Sea", + "meaning": "GAZ:00002284" + }, + "Northern Mariana Islands": { + "text": "Northern Mariana Islands", + "meaning": "GAZ:00003958" + }, + "Norway": { + "text": "Norway", + "meaning": "GAZ:00002699" + }, + "Oman": { + "text": "Oman", + "meaning": "GAZ:00005283" + }, + "Pakistan": { + "text": "Pakistan", + "meaning": "GAZ:00005246" + }, + "Palau": { + "text": "Palau", + "meaning": "GAZ:00006905" + }, + "Panama": { + "text": "Panama", + "meaning": "GAZ:00002892" + }, + "Papua New Guinea": { + "text": "Papua New Guinea", + "meaning": "GAZ:00003922" + }, + "Paracel Islands": { + "text": "Paracel Islands", + "meaning": "GAZ:00010832" + }, + "Paraguay": { + "text": "Paraguay", + "meaning": "GAZ:00002933" + }, + "Peru": { + "text": "Peru", + "meaning": "GAZ:00002932" + }, + "Philippines": { + "text": "Philippines", + "meaning": "GAZ:00004525" + }, + "Pitcairn Islands": { + "text": "Pitcairn Islands", + "meaning": "GAZ:00005867" + }, + "Poland": { + "text": "Poland", + "meaning": "GAZ:00002939" + }, + "Portugal": { + "text": "Portugal", + "meaning": "GAZ:00004126" + }, + "Puerto Rico": { + "text": "Puerto Rico", + "meaning": "GAZ:00006935" + }, + "Qatar": { + "text": "Qatar", + "meaning": "GAZ:00005286" + }, + "Republic of the Congo": { + "text": "Republic of the Congo", + "meaning": "GAZ:00001088" + }, + "Reunion": { + "text": "Reunion", + "meaning": "GAZ:00003945" + }, + "Romania": { + "text": "Romania", + "meaning": "GAZ:00002951" + }, + "Ross Sea": { + "text": "Ross Sea", + "meaning": "GAZ:00023304" + }, + "Russia": { + "text": "Russia", + "meaning": "GAZ:00002721" + }, + "Rwanda": { + "text": "Rwanda", + "meaning": "GAZ:00001087" + }, + "Saint Helena": { + "text": "Saint Helena", + "meaning": "GAZ:00000849" + }, + "Saint Kitts and Nevis": { + "text": "Saint Kitts and Nevis", + "meaning": "GAZ:00006906" + }, + "Saint Lucia": { + "text": "Saint Lucia", + "meaning": "GAZ:00006909" + }, + "Saint Pierre and Miquelon": { + "text": "Saint Pierre and Miquelon", + "meaning": "GAZ:00003942" + }, + "Saint Martin": { + "text": "Saint Martin", + "meaning": "GAZ:00005841" + }, + "Saint Vincent and the Grenadines": { + "text": "Saint Vincent and the Grenadines", + "meaning": "GAZ:02000565" + }, + "Samoa": { + "text": "Samoa", + "meaning": "GAZ:00006910" + }, + "San Marino": { + "text": "San Marino", + "meaning": "GAZ:00003102" + }, + "Sao Tome and Principe": { + "text": "Sao Tome and Principe", + "meaning": "GAZ:00006927" + }, + "Saudi Arabia": { + "text": "Saudi Arabia", + "meaning": "GAZ:00005279" + }, + "Senegal": { + "text": "Senegal", + "meaning": "GAZ:00000913" + }, + "Serbia": { + "text": "Serbia", + "meaning": "GAZ:00002957" + }, + "Seychelles": { + "text": "Seychelles", + "meaning": "GAZ:00006922" + }, + "Sierra Leone": { + "text": "Sierra Leone", + "meaning": "GAZ:00000914" + }, + "Singapore": { + "text": "Singapore", + "meaning": "GAZ:00003923" + }, + "Sint Maarten": { + "text": "Sint Maarten", + "meaning": "GAZ:00012579" + }, + "Slovakia": { + "text": "Slovakia", + "meaning": "GAZ:00002956" + }, + "Slovenia": { + "text": "Slovenia", + "meaning": "GAZ:00002955" + }, + "Solomon Islands": { + "text": "Solomon Islands", + "meaning": "GAZ:00005275" + }, + "Somalia": { + "text": "Somalia", + "meaning": "GAZ:00001104" + }, + "South Africa": { + "text": "South Africa", + "meaning": "GAZ:00001094" + }, + "South Georgia and the South Sandwich Islands": { + "text": "South Georgia and the South Sandwich Islands", + "meaning": "GAZ:00003990" + }, + "South Korea": { + "text": "South Korea", + "meaning": "GAZ:00002802" + }, + "South Sudan": { + "text": "South Sudan", + "meaning": "GAZ:00233439" + }, + "Spain": { + "text": "Spain", + "meaning": "GAZ:00000591" + }, + "Spratly Islands": { + "text": "Spratly Islands", + "meaning": "GAZ:00010831" + }, + "Sri Lanka": { + "text": "Sri Lanka", + "meaning": "GAZ:00003924" + }, + "State of Palestine": { + "text": "State of Palestine", + "meaning": "GAZ:00002475" + }, + "Sudan": { + "text": "Sudan", + "meaning": "GAZ:00000560" + }, + "Suriname": { + "text": "Suriname", + "meaning": "GAZ:00002525" + }, + "Svalbard": { + "text": "Svalbard", + "meaning": "GAZ:00005396" + }, + "Swaziland": { + "text": "Swaziland", + "meaning": "GAZ:00001099" + }, + "Sweden": { + "text": "Sweden", + "meaning": "GAZ:00002729" + }, + "Switzerland": { + "text": "Switzerland", + "meaning": "GAZ:00002941" + }, + "Syria": { + "text": "Syria", + "meaning": "GAZ:00002474" + }, + "Taiwan": { + "text": "Taiwan", + "meaning": "GAZ:00005341" + }, + "Tajikistan": { + "text": "Tajikistan", + "meaning": "GAZ:00006912" + }, + "Tanzania": { + "text": "Tanzania", + "meaning": "GAZ:00001103" + }, + "Thailand": { + "text": "Thailand", + "meaning": "GAZ:00003744" + }, + "Timor-Leste": { + "text": "Timor-Leste", + "meaning": "GAZ:00006913" + }, + "Togo": { + "text": "Togo", + "meaning": "GAZ:00000915" + }, + "Tokelau": { + "text": "Tokelau", + "meaning": "GAZ:00260188" + }, + "Tonga": { + "text": "Tonga", + "meaning": "GAZ:00006916" + }, + "Trinidad and Tobago": { + "text": "Trinidad and Tobago", + "meaning": "GAZ:00003767" + }, + "Tromelin Island": { + "text": "Tromelin Island", + "meaning": "GAZ:00005812" + }, + "Tunisia": { + "text": "Tunisia", + "meaning": "GAZ:00000562" + }, + "Turkey": { + "text": "Turkey", + "meaning": "GAZ:00000558" + }, + "Turkmenistan": { + "text": "Turkmenistan", + "meaning": "GAZ:00005018" + }, + "Turks and Caicos Islands": { + "text": "Turks and Caicos Islands", + "meaning": "GAZ:00003955" + }, + "Tuvalu": { + "text": "Tuvalu", + "meaning": "GAZ:00009715" + }, + "United States of America": { + "text": "United States of America", + "meaning": "GAZ:00002459" + }, + "Uganda": { + "text": "Uganda", + "meaning": "GAZ:00001102" + }, + "Ukraine": { + "text": "Ukraine", + "meaning": "GAZ:00002724" + }, + "United Arab Emirates": { + "text": "United Arab Emirates", + "meaning": "GAZ:00005282" + }, + "United Kingdom": { + "text": "United Kingdom", + "meaning": "GAZ:00002637" + }, + "Uruguay": { + "text": "Uruguay", + "meaning": "GAZ:00002930" + }, + "Uzbekistan": { + "text": "Uzbekistan", + "meaning": "GAZ:00004979" + }, + "Vanuatu": { + "text": "Vanuatu", + "meaning": "GAZ:00006918" + }, + "Venezuela": { + "text": "Venezuela", + "meaning": "GAZ:00002931" + }, + "Viet Nam": { + "text": "Viet Nam", + "meaning": "GAZ:00003756" + }, + "Virgin Islands": { + "text": "Virgin Islands", + "meaning": "GAZ:00003959" + }, + "Wake Island": { + "text": "Wake Island", + "meaning": "GAZ:00007111" + }, + "Wallis and Futuna": { + "text": "Wallis and Futuna", + "meaning": "GAZ:00007191" + }, + "West Bank": { + "text": "West Bank", + "meaning": "GAZ:00009572" + }, + "Western Sahara": { + "text": "Western Sahara", + "meaning": "GAZ:00000564" + }, + "Yemen": { + "text": "Yemen", + "meaning": "GAZ:00005284" + }, + "Zambia": { + "text": "Zambia", + "meaning": "GAZ:00001107" + }, + "Zimbabwe": { + "text": "Zimbabwe", + "meaning": "GAZ:00001106" } } } diff --git a/web/templates/canada_covid19/schema.yaml b/web/templates/canada_covid19/schema.yaml index 655f4f3d..20fbc476 100644 --- a/web/templates/canada_covid19/schema.yaml +++ b/web/templates/canada_covid19/schema.yaml @@ -3400,6 +3400,7 @@ enums: Chronic lung disease: text: Chronic lung disease meaning: HP:0006528 + is_a: Lung disease Corticosteroids: text: Corticosteroids meaning: NCIT:C211 @@ -3458,6 +3459,3227 @@ enums: Immunocompromised: text: Immunocompromised meaning: NCIT:C14139 + Lupus: + text: Lupus + meaning: MONDO:0004670 + is_a: Immunocompromised + Inflammatory bowel disease (IBD): + text: Inflammatory bowel disease (IBD) + meaning: MONDO:0005265 + Colitis: + text: Colitis + meaning: HP:0002583 + is_a: Inflammatory bowel disease (IBD) + Ulcerative colitis: + text: Ulcerative colitis + meaning: HP:0100279 + is_a: Colitis + Crohn's disease: + text: Crohn's disease + meaning: HP:0100280 + is_a: Inflammatory bowel disease (IBD) + Renal disorder: + text: Renal disorder + meaning: NCIT:C3149 + Renal disease: + text: Renal disease + meaning: MONDO:0005240 + is_a: Renal disorder + Chronic renal disease: + text: Chronic renal disease + meaning: HP:0012622 + is_a: Renal disease + Renal failure: + text: Renal failure + meaning: HP:0000083 + is_a: Renal disease + Liver disease: + text: Liver disease + meaning: MONDO:0005154 + Chronic liver disease: + text: Chronic liver disease + meaning: NCIT:C113609 + is_a: Liver disease + Fatty liver disease (FLD): + text: Fatty liver disease (FLD) + meaning: HP:0001397 + is_a: Chronic liver disease + Myalgia (muscle pain): + text: Myalgia (muscle pain) + meaning: HP:0003326 + Myalgic encephalomyelitis (chronic fatigue syndrome): + text: Myalgic encephalomyelitis (chronic fatigue syndrome) + meaning: MONDO:0005404 + Neurological disorder: + text: Neurological disorder + meaning: MONDO:0005071 + Neuromuscular disorder: + text: Neuromuscular disorder + meaning: MONDO:0019056 + is_a: Neurological disorder + Obesity: + text: Obesity + meaning: HP:0001513 + Severe obesity: + text: Severe obesity + meaning: MONDO:0005139 + is_a: Obesity + Respiratory disorder: + text: Respiratory disorder + meaning: MONDO:0005087 + Asthma: + text: Asthma + meaning: HP:0002099 + is_a: Respiratory disorder + Chronic bronchitis: + text: Chronic bronchitis + meaning: HP:0004469 + is_a: Respiratory disorder + Chronic obstructive pulmonary disease: + text: Chronic obstructive pulmonary disease + meaning: HP:0006510 + is_a: Respiratory disorder + Emphysema: + text: Emphysema + meaning: HP:0002097 + is_a: Respiratory disorder + Lung disease: + text: Lung disease + meaning: MONDO:0005275 + is_a: Respiratory disorder + Pulmonary fibrosis: + text: Pulmonary fibrosis + meaning: HP:0002206 + is_a: Lung disease + Pneumonia: + text: Pneumonia + meaning: HP:0002090 + is_a: Respiratory disorder + Respiratory failure: + text: Respiratory failure + meaning: HP:0002878 + is_a: Respiratory disorder + Adult respiratory distress syndrome: + text: Adult respiratory distress syndrome + meaning: HP:0033677 + is_a: Respiratory failure + Newborn respiratory distress syndrome: + text: Newborn respiratory distress syndrome + meaning: MONDO:0009971 + is_a: Respiratory failure + Tuberculosis: + text: Tuberculosis + meaning: MONDO:0018076 + is_a: Respiratory disorder + "Postpartum (\u22646 weeks)": + text: "Postpartum (\u22646 weeks)" + meaning: GENEPIO:0100077 + Pregnancy: + text: Pregnancy + meaning: NCIT:C25742 + Rheumatic disease: + text: Rheumatic disease + meaning: MONDO:0005554 + Sickle cell disease: + text: Sickle cell disease + meaning: MONDO:0011382 + Substance use: + text: Substance use + meaning: NBO:0001845 + Alcohol abuse: + text: Alcohol abuse + meaning: MONDO:0002046 + is_a: Substance use + Drug abuse: + text: Drug abuse + meaning: GENEPIO:0100078 + is_a: Substance use + Injection drug abuse: + text: Injection drug abuse + meaning: GENEPIO:0100079 + is_a: Drug abuse + Smoking: + text: Smoking + meaning: NBO:0015005 + is_a: Substance use + Vaping: + text: Vaping + meaning: NCIT:C173621 + is_a: Substance use + Tachypnea (accelerated respiratory rate): + text: Tachypnea (accelerated respiratory rate) + meaning: HP:0002789 + Transplant: + text: Transplant + meaning: NCIT:C159659 + Hematopoietic stem cell transplant (bone marrow transplant): + text: Hematopoietic stem cell transplant (bone marrow transplant) + meaning: NCIT:C131759 + is_a: Transplant + Cardiac transplant: + text: Cardiac transplant + meaning: GENEPIO:0100080 + is_a: Transplant + Kidney transplant: + text: Kidney transplant + meaning: NCIT:C157332 + is_a: Transplant + Liver transplant: + text: Liver transplant + meaning: GENEPIO:0100081 + is_a: Transplant + variant designation menu: + name: variant designation menu + permissible_values: + Variant of Concern (VOC): + text: Variant of Concern (VOC) + meaning: GENEPIO:0100082 + Variant of Interest (VOI): + text: Variant of Interest (VOI) + meaning: GENEPIO:0100083 + Variant Under Monitoring (VUM): + text: Variant Under Monitoring (VUM) + meaning: GENEPIO:0100279 + variant evidence menu: + name: variant evidence menu + permissible_values: + RT-qPCR: + text: RT-qPCR + meaning: CIDO:0000019 + Sequencing: + text: Sequencing + meaning: CIDO:0000027 + complications menu: + name: complications menu + permissible_values: + Abnormal blood oxygen level: + text: Abnormal blood oxygen level + meaning: HP:0500165 + Acute kidney injury: + text: Acute kidney injury + meaning: HP:0001919 + Acute lung injury: + text: Acute lung injury + meaning: MONDO:0015796 + Ventilation induced lung injury (VILI): + text: Ventilation induced lung injury (VILI) + meaning: GENEPIO:0100092 + is_a: Acute lung injury + Acute respiratory failure: + text: Acute respiratory failure + meaning: MONDO:0001208 + Arrhythmia (complication): + text: Arrhythmia (complication) + meaning: HP:0011675 + Tachycardia: + text: Tachycardia + meaning: HP:0001649 + is_a: Arrhythmia (complication) + Polymorphic ventricular tachycardia (VT): + text: Polymorphic ventricular tachycardia (VT) + meaning: HP:0031677 + is_a: Tachycardia + Tachyarrhythmia: + text: Tachyarrhythmia + meaning: GENEPIO:0100084 + is_a: Tachycardia + Cardiac injury: + text: Cardiac injury + meaning: GENEPIO:0100074 + Cardiac arrest: + text: Cardiac arrest + meaning: HP:0001695 + Cardiogenic shock: + text: Cardiogenic shock + meaning: HP:0030149 + Blood clot: + text: Blood clot + meaning: HP:0001977 + Arterial clot: + text: Arterial clot + meaning: HP:0004420 + is_a: Blood clot + Deep vein thrombosis (DVT): + text: Deep vein thrombosis (DVT) + meaning: HP:0002625 + is_a: Blood clot + Pulmonary embolism (PE): + text: Pulmonary embolism (PE) + meaning: HP:0002204 + is_a: Blood clot + Cardiomyopathy: + text: Cardiomyopathy + meaning: HP:0001638 + Central nervous system invasion: + text: Central nervous system invasion + meaning: MONDO:0024619 + Stroke (complication): + text: Stroke (complication) + meaning: HP:0001297 + Central Nervous System Vasculitis: + text: Central Nervous System Vasculitis + meaning: MONDO:0003346 + is_a: Stroke (complication) + Acute ischemic stroke: + text: Acute ischemic stroke + meaning: HP:0002140 + is_a: Stroke (complication) + Coma: + text: Coma + meaning: HP:0001259 + Convulsions: + text: Convulsions + meaning: HP:0011097 + COVID-19 associated coagulopathy (CAC): + text: COVID-19 associated coagulopathy (CAC) + meaning: NCIT:C171562 + Cystic fibrosis: + text: Cystic fibrosis + meaning: MONDO:0009061 + Cytokine release syndrome: + text: Cytokine release syndrome + meaning: MONDO:0600008 + Disseminated intravascular coagulation (DIC): + text: Disseminated intravascular coagulation (DIC) + meaning: MPATH:108 + Encephalopathy: + text: Encephalopathy + meaning: HP:0001298 + Fulminant myocarditis: + text: Fulminant myocarditis + meaning: GENEPIO:0100088 + "Guillain-Barr\xE9 syndrome": + text: "Guillain-Barr\xE9 syndrome" + meaning: MONDO:0016218 + Internal hemorrhage (complication; internal bleeding): + text: Internal hemorrhage (complication; internal bleeding) + meaning: HP:0011029 + Intracerebral haemorrhage: + text: Intracerebral haemorrhage + meaning: MONDO:0013792 + is_a: Internal hemorrhage (complication; internal bleeding) + Kawasaki disease: + text: Kawasaki disease + meaning: MONDO:0012727 + Complete Kawasaki disease: + text: Complete Kawasaki disease + meaning: GENEPIO:0100089 + is_a: Kawasaki disease + Incomplete Kawasaki disease: + text: Incomplete Kawasaki disease + meaning: GENEPIO:0100090 + is_a: Kawasaki disease + Liver dysfunction: + text: Liver dysfunction + meaning: HP:0001410 + Acute liver injury: + text: Acute liver injury + meaning: GENEPIO:0100091 + is_a: Liver dysfunction + Long COVID-19: + text: Long COVID-19 + meaning: MONDO:0100233 + Meningitis: + text: Meningitis + meaning: HP:0001287 + Migraine: + text: Migraine + meaning: HP:0002076 + Miscarriage: + text: Miscarriage + meaning: HP:0005268 + Multisystem inflammatory syndrome in children (MIS-C): + text: Multisystem inflammatory syndrome in children (MIS-C) + meaning: MONDO:0100163 + Multisystem inflammatory syndrome in adults (MIS-A): + text: Multisystem inflammatory syndrome in adults (MIS-A) + meaning: MONDO:0100319 + Muscle injury: + text: Muscle injury + meaning: GENEPIO:0100093 + Myalgic encephalomyelitis (ME): + text: Myalgic encephalomyelitis (ME) + meaning: MONDO:0005404 + Myocardial infarction (heart attack): + text: Myocardial infarction (heart attack) + meaning: MONDO:0005068 + Acute myocardial infarction: + text: Acute myocardial infarction + meaning: MONDO:0004781 + is_a: Myocardial infarction (heart attack) + ST-segment elevation myocardial infarction: + text: ST-segment elevation myocardial infarction + meaning: MONDO:0041656 + is_a: Myocardial infarction (heart attack) + Myocardial injury: + text: Myocardial injury + meaning: HP:0001700 + Neonatal complications: + text: Neonatal complications + meaning: NCIT:C168498 + Noncardiogenic pulmonary edema: + text: Noncardiogenic pulmonary edema + meaning: GENEPIO:0100085 + Acute respiratory distress syndrome (ARDS): + text: Acute respiratory distress syndrome (ARDS) + meaning: HP:0033677 + is_a: Noncardiogenic pulmonary edema + COVID-19 associated ARDS (CARDS): + text: COVID-19 associated ARDS (CARDS) + meaning: NCIT:C171551 + is_a: Acute respiratory distress syndrome (ARDS) + Neurogenic pulmonary edema (NPE): + text: Neurogenic pulmonary edema (NPE) + meaning: GENEPIO:0100086 + is_a: Acute respiratory distress syndrome (ARDS) + Organ failure: + text: Organ failure + meaning: GENEPIO:0100094 + Heart failure: + text: Heart failure + meaning: HP:0001635 + is_a: Organ failure + Liver failure: + text: Liver failure + meaning: MONDO:0100192 + is_a: Organ failure + Paralysis: + text: Paralysis + meaning: HP:0003470 + Pneumothorax (collapsed lung): + text: Pneumothorax (collapsed lung) + meaning: HP:0002107 + Spontaneous pneumothorax: + text: Spontaneous pneumothorax + meaning: HP:0002108 + is_a: Pneumothorax (collapsed lung) + Spontaneous tension pneumothorax: + text: Spontaneous tension pneumothorax + meaning: MONDO:0002075 + is_a: Pneumothorax (collapsed lung) + Pneumonia (complication): + text: Pneumonia (complication) + meaning: HP:0002090 + COVID-19 pneumonia: + text: COVID-19 pneumonia + meaning: NCIT:C171550 + is_a: Pneumonia (complication) + Pregancy complications: + text: Pregancy complications + meaning: HP:0001197 + Rhabdomyolysis: + text: Rhabdomyolysis + meaning: HP:0003201 + Secondary infection: + text: Secondary infection + meaning: IDO:0000567 + Secondary staph infection: + text: Secondary staph infection + meaning: GENEPIO:0100095 + is_a: Secondary infection + Secondary strep infection: + text: Secondary strep infection + meaning: GENEPIO:0100096 + is_a: Secondary infection + Seizure (complication): + text: Seizure (complication) + meaning: HP:0001250 + Motor seizure: + text: Motor seizure + meaning: HP:0020219 + is_a: Seizure (complication) + Sepsis/Septicemia: + text: Sepsis/Septicemia + meaning: HP:0100806 + Sepsis: + text: Sepsis + meaning: IDO:0000636 + is_a: Sepsis/Septicemia + Septicemia: + text: Septicemia + meaning: NCIT:C3364 + is_a: Sepsis/Septicemia + Shock: + text: Shock + meaning: HP:0031273 + Hyperinflammatory shock: + text: Hyperinflammatory shock + meaning: GENEPIO:0100097 + is_a: Shock + Refractory cardiogenic shock: + text: Refractory cardiogenic shock + meaning: GENEPIO:0100098 + is_a: Shock + Refractory cardiogenic plus vasoplegic shock: + text: Refractory cardiogenic plus vasoplegic shock + meaning: GENEPIO:0100099 + is_a: Shock + Septic shock: + text: Septic shock + meaning: NCIT:C35018 + is_a: Shock + Vasculitis: + text: Vasculitis + meaning: HP:0002633 + vaccine name menu: + name: vaccine name menu + permissible_values: + Astrazeneca (Vaxzevria): + text: Astrazeneca (Vaxzevria) + meaning: GENEPIO:0100308 + Johnson & Johnson (Janssen): + text: Johnson & Johnson (Janssen) + meaning: GENEPIO:0100307 + Moderna (Spikevax): + text: Moderna (Spikevax) + meaning: GENEPIO:0100304 + Pfizer-BioNTech (Comirnaty): + text: Pfizer-BioNTech (Comirnaty) + meaning: GENEPIO:0100305 + Pfizer-BioNTech (Comirnaty Pediatric): + text: Pfizer-BioNTech (Comirnaty Pediatric) + meaning: GENEPIO:0100306 + anatomical material menu: + name: anatomical material menu + permissible_values: + Blood: + text: Blood + meaning: UBERON:0000178 + Fluid: + text: Fluid + meaning: UBERON:0006314 + Saliva: + text: Saliva + meaning: UBERON:0001836 + is_a: Fluid + Fluid (cerebrospinal (CSF)): + text: Fluid (cerebrospinal (CSF)) + meaning: UBERON:0001359 + is_a: Fluid + Fluid (pericardial): + text: Fluid (pericardial) + meaning: UBERON:0002409 + is_a: Fluid + Fluid (pleural): + text: Fluid (pleural) + meaning: UBERON:0001087 + is_a: Fluid + Fluid (vaginal): + text: Fluid (vaginal) + meaning: UBERON:0036243 + is_a: Fluid + Fluid (amniotic): + text: Fluid (amniotic) + meaning: UBERON:0000173 + is_a: Fluid + Tissue: + text: Tissue + meaning: UBERON:0000479 + anatomical part menu: + name: anatomical part menu + permissible_values: + Anus: + text: Anus + meaning: UBERON:0001245 + Buccal mucosa: + text: Buccal mucosa + meaning: UBERON:0006956 + Duodenum: + text: Duodenum + meaning: UBERON:0002114 + Eye: + text: Eye + meaning: UBERON:0000970 + Intestine: + text: Intestine + meaning: UBERON:0000160 + Lower respiratory tract: + text: Lower respiratory tract + meaning: UBERON:0001558 + Bronchus: + text: Bronchus + meaning: UBERON:0002185 + is_a: Lower respiratory tract + Lung: + text: Lung + meaning: UBERON:0002048 + is_a: Lower respiratory tract + Bronchiole: + text: Bronchiole + meaning: UBERON:0002186 + is_a: Lung + Alveolar sac: + text: Alveolar sac + meaning: UBERON:0002169 + is_a: Lung + Pleural sac: + text: Pleural sac + meaning: UBERON:0009778 + is_a: Lower respiratory tract + Pleural cavity: + text: Pleural cavity + meaning: UBERON:0002402 + is_a: Pleural sac + Trachea: + text: Trachea + meaning: UBERON:0003126 + is_a: Lower respiratory tract + Rectum: + text: Rectum + meaning: UBERON:0001052 + Skin: + text: Skin + meaning: UBERON:0001003 + Stomach: + text: Stomach + meaning: UBERON:0000945 + Upper respiratory tract: + text: Upper respiratory tract + meaning: UBERON:0001557 + Anterior Nares: + text: Anterior Nares + meaning: UBERON:2001427 + is_a: Upper respiratory tract + Esophagus: + text: Esophagus + meaning: UBERON:0001043 + is_a: Upper respiratory tract + Ethmoid sinus: + text: Ethmoid sinus + meaning: UBERON:0002453 + is_a: Upper respiratory tract + Nasal Cavity: + text: Nasal Cavity + meaning: UBERON:0001707 + is_a: Upper respiratory tract + Middle Nasal Turbinate: + text: Middle Nasal Turbinate + meaning: UBERON:0005921 + is_a: Nasal Cavity + Inferior Nasal Turbinate: + text: Inferior Nasal Turbinate + meaning: UBERON:0005922 + is_a: Nasal Cavity + Nasopharynx (NP): + text: Nasopharynx (NP) + meaning: UBERON:0001728 + is_a: Upper respiratory tract + Oropharynx (OP): + text: Oropharynx (OP) + meaning: UBERON:0001729 + is_a: Upper respiratory tract + Pharynx (throat): + text: Pharynx (throat) + meaning: UBERON:0000341 + is_a: Upper respiratory tract + body product menu: + name: body product menu + permissible_values: + Breast Milk: + text: Breast Milk + meaning: UBERON:0001913 + Feces: + text: Feces + meaning: UBERON:0001988 + Fluid (seminal): + text: Fluid (seminal) + meaning: UBERON:0006530 + Mucus: + text: Mucus + meaning: UBERON:0000912 + Sputum: + text: Sputum + meaning: UBERON:0007311 + is_a: Mucus + Sweat: + text: Sweat + meaning: UBERON:0001089 + Tear: + text: Tear + meaning: UBERON:0001827 + Urine: + text: Urine + meaning: UBERON:0001088 + prior SARS-CoV-2 infection menu: + name: prior SARS-CoV-2 infection menu + permissible_values: + Prior infection: + text: Prior infection + meaning: GENEPIO:0100037 + No prior infection: + text: No prior infection + meaning: GENEPIO:0100233 + environmental material menu: + name: environmental material menu + permissible_values: + Air vent: + text: Air vent + meaning: ENVO:03501208 + Banknote: + text: Banknote + meaning: ENVO:00003896 + Bed rail: + text: Bed rail + meaning: ENVO:03501209 + Building floor: + text: Building floor + meaning: ENVO:01000486 + Cloth: + text: Cloth + meaning: ENVO:02000058 + Control panel: + text: Control panel + meaning: ENVO:03501210 + Door: + text: Door + meaning: ENVO:03501220 + Door handle: + text: Door handle + meaning: ENVO:03501211 + Face mask: + text: Face mask + meaning: OBI:0002787 + Face shield: + text: Face shield + meaning: OBI:0002791 + Food: + text: Food + meaning: FOODON:00002403 + Food packaging: + text: Food packaging + meaning: FOODON:03490100 + Glass: + text: Glass + meaning: ENVO:01000481 + Handrail: + text: Handrail + meaning: ENVO:03501212 + Hospital gown: + text: Hospital gown + meaning: OBI:0002796 + Light switch: + text: Light switch + meaning: ENVO:03501213 + Locker: + text: Locker + meaning: ENVO:03501214 + N95 mask: + text: N95 mask + meaning: OBI:0002790 + Nurse call button: + text: Nurse call button + meaning: ENVO:03501215 + Paper: + text: Paper + meaning: ENVO:03501256 + Particulate matter: + text: Particulate matter + meaning: ENVO:01000060 + Plastic: + text: Plastic + meaning: ENVO:01000404 + PPE gown: + text: PPE gown + meaning: GENEPIO:0100025 + Sewage: + text: Sewage + meaning: ENVO:00002018 + Sink: + text: Sink + meaning: ENVO:01000990 + Soil: + text: Soil + meaning: ENVO:00001998 + Stainless steel: + text: Stainless steel + meaning: ENVO:03501216 + Tissue paper: + text: Tissue paper + meaning: ENVO:03501217 + Toilet bowl: + text: Toilet bowl + meaning: ENVO:03501218 + Water: + text: Water + meaning: ENVO:00002006 + Wastewater: + text: Wastewater + meaning: ENVO:00002001 + is_a: Water + Window: + text: Window + meaning: ENVO:03501219 + Wood: + text: Wood + meaning: ENVO:00002040 + environmental site menu: + name: environmental site menu + permissible_values: + Acute care facility: + text: Acute care facility + meaning: ENVO:03501135 + Animal house: + text: Animal house + meaning: ENVO:00003040 + Bathroom: + text: Bathroom + meaning: ENVO:01000422 + Clinical assessment centre: + text: Clinical assessment centre + meaning: ENVO:03501136 + Conference venue: + text: Conference venue + meaning: ENVO:03501127 + Corridor: + text: Corridor + meaning: ENVO:03501121 + Daycare: + text: Daycare + meaning: ENVO:01000927 + Emergency room (ER): + text: Emergency room (ER) + meaning: ENVO:03501145 + Family practice clinic: + text: Family practice clinic + meaning: ENVO:03501186 + Group home: + text: Group home + meaning: ENVO:03501196 + Homeless shelter: + text: Homeless shelter + meaning: ENVO:03501133 + Hospital: + text: Hospital + meaning: ENVO:00002173 + Intensive Care Unit (ICU): + text: Intensive Care Unit (ICU) + meaning: ENVO:03501152 + Long Term Care Facility: + text: Long Term Care Facility + meaning: ENVO:03501194 + Patient room: + text: Patient room + meaning: ENVO:03501180 + Prison: + text: Prison + meaning: ENVO:03501204 + Production Facility: + text: Production Facility + meaning: ENVO:01000536 + School: + text: School + meaning: ENVO:03501130 + Sewage Plant: + text: Sewage Plant + meaning: ENVO:00003043 + Subway train: + text: Subway train + meaning: ENVO:03501109 + University campus: + text: University campus + meaning: ENVO:00000467 + Wet market: + text: Wet market + meaning: ENVO:03501198 + collection method menu: + name: collection method menu + permissible_values: + Amniocentesis: + text: Amniocentesis + meaning: NCIT:C52009 + Aspiration: + text: Aspiration + meaning: NCIT:C15631 + Suprapubic Aspiration: + text: Suprapubic Aspiration + meaning: GENEPIO:0100028 + is_a: Aspiration + Tracheal aspiration: + text: Tracheal aspiration + meaning: GENEPIO:0100029 + is_a: Aspiration + Vacuum Aspiration: + text: Vacuum Aspiration + meaning: GENEPIO:0100030 + is_a: Aspiration + Biopsy: + text: Biopsy + meaning: OBI:0002650 + Needle Biopsy: + text: Needle Biopsy + meaning: OBI:0002651 + is_a: Biopsy + Filtration: + text: Filtration + meaning: OBI:0302885 + Air filtration: + text: Air filtration + meaning: GENEPIO:0100031 + is_a: Filtration + Lavage: + text: Lavage + meaning: OBI:0600044 + Bronchoalveolar lavage (BAL): + text: Bronchoalveolar lavage (BAL) + meaning: GENEPIO:0100032 + is_a: Lavage + Gastric Lavage: + text: Gastric Lavage + meaning: GENEPIO:0100033 + is_a: Lavage + Lumbar Puncture: + text: Lumbar Puncture + meaning: NCIT:C15327 + Necropsy: + text: Necropsy + meaning: MMO:0000344 + Phlebotomy: + text: Phlebotomy + meaning: NCIT:C28221 + Rinsing: + text: Rinsing + meaning: GENEPIO:0002116 + Saline gargle (mouth rinse and gargle): + text: Saline gargle (mouth rinse and gargle) + meaning: GENEPIO:0100034 + is_a: Rinsing + Scraping: + text: Scraping + meaning: GENEPIO:0100035 + Swabbing: + text: Swabbing + meaning: GENEPIO:0002117 + Finger Prick: + text: Finger Prick + meaning: GENEPIO:0100036 + Washout Tear Collection: + text: Washout Tear Collection + meaning: GENEPIO:0100038 + collection device menu: + name: collection device menu + permissible_values: + Air filter: + text: Air filter + meaning: ENVO:00003968 + Blood Collection Tube: + text: Blood Collection Tube + meaning: OBI:0002859 + Bronchoscope: + text: Bronchoscope + meaning: OBI:0002826 + Collection Container: + text: Collection Container + meaning: OBI:0002088 + Collection Cup: + text: Collection Cup + meaning: GENEPIO:0100026 + Fibrobronchoscope Brush: + text: Fibrobronchoscope Brush + meaning: OBI:0002825 + Filter: + text: Filter + meaning: GENEPIO:0100103 + Fine Needle: + text: Fine Needle + meaning: OBI:0002827 + Microcapillary tube: + text: Microcapillary tube + meaning: OBI:0002858 + Micropipette: + text: Micropipette + meaning: OBI:0001128 + Needle: + text: Needle + meaning: OBI:0000436 + Serum Collection Tube: + text: Serum Collection Tube + meaning: OBI:0002860 + Sputum Collection Tube: + text: Sputum Collection Tube + meaning: OBI:0002861 + Suction Catheter: + text: Suction Catheter + meaning: OBI:0002831 + Swab: + text: Swab + meaning: GENEPIO:0100027 + Urine Collection Tube: + text: Urine Collection Tube + meaning: OBI:0002862 + Virus Transport Medium: + text: Virus Transport Medium + meaning: OBI:0002866 + host (scientific name) menu: + name: host (scientific name) menu + permissible_values: + Homo sapiens: + text: Homo sapiens + meaning: NCBITaxon:9606 + Bos taurus: + text: Bos taurus + meaning: NCBITaxon:9913 + Canis lupus familiaris: + text: Canis lupus familiaris + meaning: NCBITaxon:9615 + Chiroptera: + text: Chiroptera + meaning: NCBITaxon:9397 + Columbidae: + text: Columbidae + meaning: NCBITaxon:8930 + Felis catus: + text: Felis catus + meaning: NCBITaxon:9685 + Gallus gallus: + text: Gallus gallus + meaning: NCBITaxon:9031 + Manis: + text: Manis + meaning: NCBITaxon:9973 + Manis javanica: + text: Manis javanica + meaning: NCBITaxon:9974 + Neovison vison: + text: Neovison vison + meaning: NCBITaxon:452646 + Panthera leo: + text: Panthera leo + meaning: NCBITaxon:9689 + Panthera tigris: + text: Panthera tigris + meaning: NCBITaxon:9694 + Rhinolophidae: + text: Rhinolophidae + meaning: NCBITaxon:58055 + Rhinolophus affinis: + text: Rhinolophus affinis + meaning: NCBITaxon:59477 + Sus scrofa domesticus: + text: Sus scrofa domesticus + meaning: NCBITaxon:9825 + Viverridae: + text: Viverridae + meaning: NCBITaxon:9673 + host (common name) menu: + name: host (common name) menu + permissible_values: + Human: + text: Human + meaning: NCBITaxon:9606 + Bat: + text: Bat + meaning: NCBITaxon:9397 + Cat: + text: Cat + meaning: NCBITaxon:9685 + Chicken: + text: Chicken + meaning: NCBITaxon:9031 + Civets: + text: Civets + meaning: NCBITaxon:9673 + Cow: + text: Cow + meaning: NCBITaxon:9913 + exact_mappings: + - CNPHI:bovine + Dog: + text: Dog + meaning: NCBITaxon:9615 + Lion: + text: Lion + meaning: NCBITaxon:9689 + Mink: + text: Mink + meaning: NCBITaxon:452646 + Pangolin: + text: Pangolin + meaning: NCBITaxon:9973 + Pig: + text: Pig + meaning: NCBITaxon:9825 + exact_mappings: + - CNPHI:porcine + Pigeon: + text: Pigeon + meaning: NCBITaxon:8930 + Tiger: + text: Tiger + meaning: NCBITaxon:9694 + host health state menu: + name: host health state menu + permissible_values: + Asymptomatic: + text: Asymptomatic + meaning: NCIT:C3833 + Deceased: + text: Deceased + meaning: NCIT:C28554 + Healthy: + text: Healthy + meaning: NCIT:C115935 + Recovered: + text: Recovered + meaning: NCIT:C49498 + Symptomatic: + text: Symptomatic + meaning: NCIT:C25269 + host health status details menu: + name: host health status details menu + permissible_values: + Hospitalized: + text: Hospitalized + meaning: NCIT:C25179 + Hospitalized (Non-ICU): + text: Hospitalized (Non-ICU) + meaning: GENEPIO:0100045 + is_a: Hospitalized + Hospitalized (ICU): + text: Hospitalized (ICU) + meaning: GENEPIO:0100046 + is_a: Hospitalized + Mechanical Ventilation: + text: Mechanical Ventilation + meaning: NCIT:C70909 + Medically Isolated: + text: Medically Isolated + meaning: GENEPIO:0100047 + Medically Isolated (Negative Pressure): + text: Medically Isolated (Negative Pressure) + meaning: GENEPIO:0100048 + is_a: Medically Isolated + Self-quarantining: + text: Self-quarantining + meaning: NCIT:C173768 + host health outcome menu: + name: host health outcome menu + permissible_values: + Deceased: + text: Deceased + meaning: NCIT:C28554 + Deteriorating: + text: Deteriorating + meaning: NCIT:C25254 + Recovered: + text: Recovered + meaning: NCIT:C49498 + Stable: + text: Stable + meaning: NCIT:C30103 + organism menu: + name: organism menu + permissible_values: + Severe acute respiratory syndrome coronavirus 2: + text: Severe acute respiratory syndrome coronavirus 2 + meaning: NCBITaxon:2697049 + RaTG13: + text: RaTG13 + meaning: NCBITaxon:2709072 + RmYN02: + text: RmYN02 + meaning: GENEPIO:0100000 + purpose of sampling menu: + name: purpose of sampling menu + permissible_values: + Cluster/Outbreak investigation: + text: Cluster/Outbreak investigation + meaning: GENEPIO:0100001 + Diagnostic testing: + text: Diagnostic testing + meaning: GENEPIO:0100002 + Research: + text: Research + meaning: GENEPIO:0100003 + Surveillance: + text: Surveillance + meaning: GENEPIO:0100004 + purpose of sequencing menu: + name: purpose of sequencing menu + permissible_values: + Baseline surveillance (random sampling): + text: Baseline surveillance (random sampling) + meaning: GENEPIO:0100005 + Targeted surveillance (non-random sampling): + text: Targeted surveillance (non-random sampling) + meaning: GENEPIO:0100006 + Priority surveillance project: + text: Priority surveillance project + meaning: GENEPIO:0100007 + is_a: Targeted surveillance (non-random sampling) + Screening for Variants of Concern (VoC): + text: Screening for Variants of Concern (VoC) + meaning: GENEPIO:0100008 + is_a: Priority surveillance project + Sample has epidemiological link to Variant of Concern (VoC): + text: Sample has epidemiological link to Variant of Concern (VoC) + meaning: GENEPIO:0100273 + is_a: Screening for Variants of Concern (VoC) + Sample has epidemiological link to Omicron Variant: + text: Sample has epidemiological link to Omicron Variant + meaning: GENEPIO:0100274 + is_a: Sample has epidemiological link to Variant of Concern (VoC) + Longitudinal surveillance (repeat sampling of individuals): + text: Longitudinal surveillance (repeat sampling of individuals) + meaning: GENEPIO:0100009 + is_a: Priority surveillance project + Chronic (prolonged) infection surveillance: + text: Chronic (prolonged) infection surveillance + meaning: GENEPIO:0100842 + is_a: Longitudinal surveillance (repeat sampling of individuals) + Re-infection surveillance: + text: Re-infection surveillance + meaning: GENEPIO:0100010 + is_a: Priority surveillance project + Vaccine escape surveillance: + text: Vaccine escape surveillance + meaning: GENEPIO:0100011 + is_a: Priority surveillance project + Travel-associated surveillance: + text: Travel-associated surveillance + meaning: GENEPIO:0100012 + is_a: Priority surveillance project + Domestic travel surveillance: + text: Domestic travel surveillance + meaning: GENEPIO:0100013 + is_a: Travel-associated surveillance + Interstate/ interprovincial travel surveillance: + text: Interstate/ interprovincial travel surveillance + meaning: GENEPIO:0100275 + is_a: Domestic travel surveillance + Intra-state/ intra-provincial travel surveillance: + text: Intra-state/ intra-provincial travel surveillance + meaning: GENEPIO:0100276 + is_a: Domestic travel surveillance + International travel surveillance: + text: International travel surveillance + meaning: GENEPIO:0100014 + is_a: Travel-associated surveillance + Surveillance of international border crossing by air travel or ground transport: + text: Surveillance of international border crossing by air travel or ground + transport + meaning: GENEPIO:0100015 + is_a: International travel surveillance + Surveillance of international border crossing by air travel: + text: Surveillance of international border crossing by air travel + meaning: GENEPIO:0100016 + is_a: International travel surveillance + Surveillance of international border crossing by ground transport: + text: Surveillance of international border crossing by ground transport + meaning: GENEPIO:0100017 + is_a: International travel surveillance + Surveillance from international worker testing: + text: Surveillance from international worker testing + meaning: GENEPIO:0100018 + is_a: International travel surveillance + Cluster/Outbreak investigation: + text: Cluster/Outbreak investigation + meaning: GENEPIO:0100019 + Multi-jurisdictional outbreak investigation: + text: Multi-jurisdictional outbreak investigation + meaning: GENEPIO:0100020 + is_a: Cluster/Outbreak investigation + Intra-jurisdictional outbreak investigation: + text: Intra-jurisdictional outbreak investigation + meaning: GENEPIO:0100021 + is_a: Cluster/Outbreak investigation + Research: + text: Research + meaning: GENEPIO:0100022 + Viral passage experiment: + text: Viral passage experiment + meaning: GENEPIO:0100023 + is_a: Research + Protocol testing experiment: + text: Protocol testing experiment + meaning: GENEPIO:0100024 + is_a: Research + Retrospective sequencing: + text: Retrospective sequencing + meaning: GENEPIO:0100356 + specimen processing menu: + name: specimen processing menu + permissible_values: + Virus passage: + text: Virus passage + meaning: GENEPIO:0100039 + RNA re-extraction (post RT-PCR): + text: RNA re-extraction (post RT-PCR) + meaning: GENEPIO:0100040 + Specimens pooled: + text: Specimens pooled + meaning: OBI:0600016 + lab host menu: + name: lab host menu + permissible_values: + 293/ACE2 cell line: + text: 293/ACE2 cell line + meaning: GENEPIO:0100041 + Caco2 cell line: + text: Caco2 cell line + meaning: BTO:0000195 + Calu3 cell line: + text: Calu3 cell line + meaning: BTO:0002750 + EFK3B cell line: + text: EFK3B cell line + meaning: GENEPIO:0100042 + HEK293T cell line: + text: HEK293T cell line + meaning: BTO:0002181 + HRCE cell line: + text: HRCE cell line + meaning: GENEPIO:0100043 + Huh7 cell line: + text: Huh7 cell line + meaning: BTO:0001950 + LLCMk2 cell line: + text: LLCMk2 cell line + meaning: CLO:0007330 + MDBK cell line: + text: MDBK cell line + meaning: BTO:0000836 + NHBE cell line: + text: NHBE cell line + meaning: BTO:0002924 + PK-15 cell line: + text: PK-15 cell line + meaning: BTO:0001865 + RK-13 cell line: + text: RK-13 cell line + meaning: BTO:0002909 + U251 cell line: + text: U251 cell line + meaning: BTO:0002035 + Vero cell line: + text: Vero cell line + meaning: BTO:0001444 + Vero E6 cell line: + text: Vero E6 cell line + meaning: BTO:0004755 + is_a: Vero cell line + VeroE6/TMPRSS2 cell line: + text: VeroE6/TMPRSS2 cell line + meaning: GENEPIO:0100044 + is_a: Vero E6 cell line + host disease menu: + name: host disease menu + permissible_values: + COVID-19: + text: COVID-19 + meaning: MONDO:0100096 + host age bin menu: + name: host age bin menu + permissible_values: + 0 - 9: + text: 0 - 9 + meaning: GENEPIO:0100049 + 10 - 19: + text: 10 - 19 + meaning: GENEPIO:0100050 + 20 - 29: + text: 20 - 29 + meaning: GENEPIO:0100051 + 30 - 39: + text: 30 - 39 + meaning: GENEPIO:0100052 + 40 - 49: + text: 40 - 49 + meaning: GENEPIO:0100053 + 50 - 59: + text: 50 - 59 + meaning: GENEPIO:0100054 + 60 - 69: + text: 60 - 69 + meaning: GENEPIO:0100055 + 70 - 79: + text: 70 - 79 + meaning: GENEPIO:0100056 + 80 - 89: + text: 80 - 89 + meaning: GENEPIO:0100057 + 90 - 99: + text: 90 - 99 + meaning: GENEPIO:0100058 + exact_mappings: + - VirusSeq_Portal:90+ + 100+: + text: 100+ + meaning: GENEPIO:0100059 + exact_mappings: + - VirusSeq_Portal:90+ + host gender menu: + name: host gender menu + permissible_values: + Female: + text: Female + meaning: NCIT:C46110 + Male: + text: Male + meaning: NCIT:C46109 + Non-binary gender: + text: Non-binary gender + meaning: GSSO:000132 + Transgender (assigned male at birth): + text: Transgender (assigned male at birth) + meaning: GSSO:004004 + Transgender (assigned female at birth): + text: Transgender (assigned female at birth) + meaning: GSSO:004005 + Undeclared: + text: Undeclared + meaning: NCIT:C110959 + exposure event menu: + name: exposure event menu + permissible_values: + Mass Gathering: + text: Mass Gathering + meaning: GENEPIO:0100237 + Agricultural Event: + text: Agricultural Event + meaning: GENEPIO:0100240 + is_a: Mass Gathering + Convention: + text: Convention + meaning: GENEPIO:0100238 + is_a: Mass Gathering + Convocation: + text: Convocation + meaning: GENEPIO:0100239 + is_a: Mass Gathering + Recreational Event: + text: Recreational Event + meaning: GENEPIO:0100417 + is_a: Mass Gathering + Concert: + text: Concert + meaning: GENEPIO:0100418 + is_a: Recreational Event + Sporting Event: + text: Sporting Event + meaning: GENEPIO:0100419 + is_a: Recreational Event + Religious Gathering: + text: Religious Gathering + meaning: GENEPIO:0100241 + Mass: + text: Mass + meaning: GENEPIO:0100242 + is_a: Religious Gathering + Social Gathering: + text: Social Gathering + meaning: PCO:0000033 + Baby Shower: + text: Baby Shower + meaning: PCO:0000039 + is_a: Social Gathering + Community Event: + text: Community Event + meaning: PCO:0000034 + is_a: Social Gathering + Family Gathering: + text: Family Gathering + meaning: GENEPIO:0100243 + is_a: Social Gathering + Family Reunion: + text: Family Reunion + meaning: GENEPIO:0100244 + is_a: Family Gathering + Funeral: + text: Funeral + meaning: GENEPIO:0100245 + is_a: Social Gathering + Party: + text: Party + meaning: PCO:0000035 + is_a: Social Gathering + Potluck: + text: Potluck + meaning: PCO:0000037 + is_a: Social Gathering + Wedding: + text: Wedding + meaning: PCO:0000038 + is_a: Social Gathering + Other exposure event: + text: Other exposure event + exposure contact level menu: + name: exposure contact level menu + permissible_values: + Contact with infected individual: + text: Contact with infected individual + meaning: GENEPIO:0100357 + Direct contact (direct human-to-human contact): + text: Direct contact (direct human-to-human contact) + meaning: TRANS:0000001 + is_a: Contact with infected individual + Indirect contact: + text: Indirect contact + meaning: GENEPIO:0100246 + is_a: Contact with infected individual + Close contact (face-to-face, no direct contact): + text: Close contact (face-to-face, no direct contact) + meaning: GENEPIO:0100247 + is_a: Indirect contact + Casual contact: + text: Casual contact + meaning: GENEPIO:0100248 + is_a: Indirect contact + host role menu: + name: host role menu + permissible_values: + Attendee: + text: Attendee + meaning: GENEPIO:0100249 + Student: + text: Student + meaning: OMRSE:00000058 + is_a: Attendee + Patient: + text: Patient + meaning: OMRSE:00000030 + Inpatient: + text: Inpatient + meaning: NCIT:C25182 + is_a: Patient + Outpatient: + text: Outpatient + meaning: NCIT:C28293 + is_a: Patient + Passenger: + text: Passenger + meaning: GENEPIO:0100250 + Resident: + text: Resident + meaning: GENEPIO:0100251 + Visitor: + text: Visitor + meaning: GENEPIO:0100252 + Volunteer: + text: Volunteer + meaning: GENEPIO:0100253 + Work: + text: Work + meaning: GENEPIO:0100254 + Administrator: + text: Administrator + meaning: GENEPIO:0100255 + is_a: Work + Child Care/Education Worker: + text: Child Care/Education Worker + is_a: Work + Essential Worker: + text: Essential Worker + is_a: Work + First Responder: + text: First Responder + meaning: GENEPIO:0100256 + is_a: Work + Firefighter: + text: Firefighter + meaning: GENEPIO:0100257 + is_a: First Responder + Paramedic: + text: Paramedic + meaning: GENEPIO:0100258 + is_a: First Responder + Police Officer: + text: Police Officer + meaning: GENEPIO:0100259 + is_a: First Responder + Healthcare Worker: + text: Healthcare Worker + meaning: GENEPIO:0100334 + is_a: Work + Community Healthcare Worker: + text: Community Healthcare Worker + meaning: GENEPIO:0100420 + is_a: Healthcare Worker + Laboratory Worker: + text: Laboratory Worker + meaning: GENEPIO:0100262 + is_a: Healthcare Worker + Nurse: + text: Nurse + meaning: OMRSE:00000014 + is_a: Healthcare Worker + Personal Care Aid: + text: Personal Care Aid + meaning: GENEPIO:0100263 + is_a: Healthcare Worker + Pharmacist: + text: Pharmacist + meaning: GENEPIO:0100264 + is_a: Healthcare Worker + Physician: + text: Physician + meaning: OMRSE:00000013 + is_a: Healthcare Worker + Housekeeper: + text: Housekeeper + meaning: GENEPIO:0100260 + is_a: Work + International worker: + text: International worker + is_a: Work + Kitchen Worker: + text: Kitchen Worker + meaning: GENEPIO:0100261 + is_a: Work + Rotational Worker: + text: Rotational Worker + meaning: GENEPIO:0100354 + is_a: Work + Seasonal Worker: + text: Seasonal Worker + meaning: GENEPIO:0100355 + is_a: Work + Transport Worker: + text: Transport Worker + is_a: Work + Transport Truck Driver: + text: Transport Truck Driver + is_a: Transport Worker + Veterinarian: + text: Veterinarian + meaning: GENEPIO:0100265 + is_a: Work + Social role: + text: Social role + meaning: OMRSE:00000001 + Acquaintance of case: + text: Acquaintance of case + meaning: GENEPIO:0100266 + is_a: Social role + Relative of case: + text: Relative of case + meaning: GENEPIO:0100267 + is_a: Social role + Child of case: + text: Child of case + meaning: GENEPIO:0100268 + is_a: Relative of case + Parent of case: + text: Parent of case + meaning: GENEPIO:0100269 + is_a: Relative of case + Father of case: + text: Father of case + meaning: GENEPIO:0100270 + is_a: Parent of case + Mother of case: + text: Mother of case + meaning: GENEPIO:0100271 + is_a: Parent of case + Spouse of case: + text: Spouse of case + meaning: GENEPIO:0100272 + is_a: Social role + Other Host Role: + text: Other Host Role + exposure setting menu: + name: exposure setting menu + permissible_values: + Human Exposure: + text: Human Exposure + meaning: ECTO:3000005 + Contact with Known COVID-19 Case: + text: Contact with Known COVID-19 Case + meaning: GENEPIO:0100184 + is_a: Human Exposure + Contact with Patient: + text: Contact with Patient + meaning: GENEPIO:0100185 + is_a: Human Exposure + Contact with Probable COVID-19 Case: + text: Contact with Probable COVID-19 Case + meaning: GENEPIO:0100186 + is_a: Human Exposure + Contact with Person with Acute Respiratory Illness: + text: Contact with Person with Acute Respiratory Illness + meaning: GENEPIO:0100187 + is_a: Human Exposure + Contact with Person with Fever and/or Cough: + text: Contact with Person with Fever and/or Cough + meaning: GENEPIO:0100188 + is_a: Human Exposure + Contact with Person who Recently Travelled: + text: Contact with Person who Recently Travelled + meaning: GENEPIO:0100189 + is_a: Human Exposure + Occupational, Residency or Patronage Exposure: + text: Occupational, Residency or Patronage Exposure + meaning: GENEPIO:0100190 + Abbatoir: + text: Abbatoir + meaning: ECTO:1000033 + is_a: Occupational, Residency or Patronage Exposure + Animal Rescue: + text: Animal Rescue + meaning: GENEPIO:0100191 + is_a: Occupational, Residency or Patronage Exposure + Childcare: + text: Childcare + meaning: GENEPIO:0100192 + is_a: Occupational, Residency or Patronage Exposure + Daycare: + text: Daycare + meaning: GENEPIO:0100193 + is_a: Childcare + Nursery: + text: Nursery + meaning: GENEPIO:0100194 + is_a: Childcare + Community Service Centre: + text: Community Service Centre + meaning: GENEPIO:0100195 + is_a: Occupational, Residency or Patronage Exposure + Correctional Facility: + text: Correctional Facility + meaning: GENEPIO:0100196 + is_a: Occupational, Residency or Patronage Exposure + Dormitory: + text: Dormitory + meaning: GENEPIO:0100197 + is_a: Occupational, Residency or Patronage Exposure + Farm: + text: Farm + meaning: ECTO:1000034 + is_a: Occupational, Residency or Patronage Exposure + First Nations Reserve: + text: First Nations Reserve + meaning: GENEPIO:0100198 + is_a: Occupational, Residency or Patronage Exposure + Funeral Home: + text: Funeral Home + meaning: GENEPIO:0100199 + is_a: Occupational, Residency or Patronage Exposure + Group Home: + text: Group Home + meaning: GENEPIO:0100200 + is_a: Occupational, Residency or Patronage Exposure + Healthcare Setting: + text: Healthcare Setting + meaning: GENEPIO:0100201 + is_a: Occupational, Residency or Patronage Exposure + Ambulance: + text: Ambulance + meaning: GENEPIO:0100202 + is_a: Healthcare Setting + Acute Care Facility: + text: Acute Care Facility + meaning: GENEPIO:0100203 + is_a: Healthcare Setting + Clinic: + text: Clinic + meaning: GENEPIO:0100204 + is_a: Healthcare Setting + Community Healthcare (At-Home) Setting: + text: Community Healthcare (At-Home) Setting + meaning: GENEPIO:0100415 + is_a: Healthcare Setting + Community Health Centre: + text: Community Health Centre + meaning: GENEPIO:0100205 + is_a: Healthcare Setting + Hospital: + text: Hospital + meaning: ECTO:1000035 + is_a: Healthcare Setting + Emergency Department: + text: Emergency Department + meaning: GENEPIO:0100206 + is_a: Hospital + ICU: + text: ICU + meaning: GENEPIO:0100207 + is_a: Hospital + Ward: + text: Ward + meaning: GENEPIO:0100208 + is_a: Hospital + Laboratory: + text: Laboratory + meaning: ECTO:1000036 + is_a: Healthcare Setting + Long-Term Care Facility: + text: Long-Term Care Facility + meaning: GENEPIO:0100209 + is_a: Healthcare Setting + Pharmacy: + text: Pharmacy + meaning: GENEPIO:0100210 + is_a: Healthcare Setting + Physician's Office: + text: Physician's Office + meaning: GENEPIO:0100211 + is_a: Healthcare Setting + Household: + text: Household + meaning: GENEPIO:0100212 + is_a: Occupational, Residency or Patronage Exposure + Insecure Housing (Homeless): + text: Insecure Housing (Homeless) + meaning: GENEPIO:0100213 + is_a: Occupational, Residency or Patronage Exposure + Occupational Exposure: + text: Occupational Exposure + meaning: GENEPIO:0100214 + is_a: Occupational, Residency or Patronage Exposure + Worksite: + text: Worksite + meaning: GENEPIO:0100215 + is_a: Occupational Exposure + Office: + text: Office + meaning: ECTO:1000037 + is_a: Worksite + Outdoors: + text: Outdoors + meaning: GENEPIO:0100216 + is_a: Occupational, Residency or Patronage Exposure + Camp/camping: + text: Camp/camping + meaning: ECTO:5000009 + is_a: Outdoors + Hiking Trail: + text: Hiking Trail + meaning: GENEPIO:0100217 + is_a: Outdoors + Hunting Ground: + text: Hunting Ground + meaning: ECTO:6000030 + is_a: Outdoors + Ski Resort: + text: Ski Resort + meaning: GENEPIO:0100218 + is_a: Outdoors + Petting zoo: + text: Petting zoo + meaning: ECTO:5000008 + is_a: Occupational, Residency or Patronage Exposure + Place of Worship: + text: Place of Worship + meaning: GENEPIO:0100220 + is_a: Occupational, Residency or Patronage Exposure + Church: + text: Church + meaning: GENEPIO:0100221 + is_a: Place of Worship + Mosque: + text: Mosque + meaning: GENEPIO:0100222 + is_a: Place of Worship + Temple: + text: Temple + meaning: GENEPIO:0100223 + is_a: Place of Worship + Restaurant: + text: Restaurant + meaning: ECTO:1000040 + is_a: Occupational, Residency or Patronage Exposure + Retail Store: + text: Retail Store + meaning: ECTO:1000041 + is_a: Occupational, Residency or Patronage Exposure + School: + text: School + meaning: GENEPIO:0100224 + is_a: Occupational, Residency or Patronage Exposure + Temporary Residence: + text: Temporary Residence + meaning: GENEPIO:0100225 + is_a: Occupational, Residency or Patronage Exposure + Homeless Shelter: + text: Homeless Shelter + meaning: GENEPIO:0100226 + is_a: Temporary Residence + Hotel: + text: Hotel + meaning: GENEPIO:0100227 + is_a: Temporary Residence + Veterinary Care Clinic: + text: Veterinary Care Clinic + meaning: GENEPIO:0100228 + is_a: Occupational, Residency or Patronage Exposure + Travel Exposure: + text: Travel Exposure + meaning: GENEPIO:0100229 + Travelled on a Cruise Ship: + text: Travelled on a Cruise Ship + meaning: GENEPIO:0100230 + is_a: Travel Exposure + Travelled on a Plane: + text: Travelled on a Plane + meaning: GENEPIO:0100231 + is_a: Travel Exposure + Travelled on Ground Transport: + text: Travelled on Ground Transport + meaning: GENEPIO:0100232 + is_a: Travel Exposure + Travelled outside Province/Territory: + text: Travelled outside Province/Territory + meaning: GENEPIO:0001118 + is_a: Travel Exposure + Travelled outside Canada: + text: Travelled outside Canada + meaning: GENEPIO:0001119 + is_a: Travel Exposure + Other Exposure Setting: + text: Other Exposure Setting + meaning: GENEPIO:0100235 + travel point of entry type menu: + name: travel point of entry type menu + permissible_values: + Air: + text: Air + meaning: GENEPIO:0100408 + Land: + text: Land + meaning: GENEPIO:0100409 + border testing test day type menu: + name: border testing test day type menu + permissible_values: + day 1: + text: day 1 + meaning: GENEPIO:0100410 + day 8: + text: day 8 + meaning: GENEPIO:0100411 + day 10: + text: day 10 + meaning: GENEPIO:0100412 + travel history availability menu: + name: travel history availability menu + permissible_values: + Travel history available: + text: Travel history available + meaning: GENEPIO:0100650 + Domestic travel history available: + text: Domestic travel history available + meaning: GENEPIO:0100651 + is_a: Travel history available + International travel history available: + text: International travel history available + meaning: GENEPIO:0100652 + is_a: Travel history available + International and domestic travel history available: + text: International and domestic travel history available + meaning: GENEPIO:0100653 + is_a: Travel history available + No travel history available: + text: No travel history available + meaning: GENEPIO:0100654 + sequencing instrument menu: + name: sequencing instrument menu + permissible_values: + Illumina: + text: Illumina + meaning: GENEPIO:0100105 + Illumina Genome Analyzer: + text: Illumina Genome Analyzer + meaning: GENEPIO:0100106 + is_a: Illumina + Illumina Genome Analyzer II: + text: Illumina Genome Analyzer II + meaning: GENEPIO:0100107 + is_a: Illumina Genome Analyzer + Illumina Genome Analyzer IIx: + text: Illumina Genome Analyzer IIx + meaning: GENEPIO:0100108 + is_a: Illumina Genome Analyzer + Illumina HiScanSQ: + text: Illumina HiScanSQ + meaning: GENEPIO:0100109 + is_a: Illumina + Illumina HiSeq: + text: Illumina HiSeq + meaning: GENEPIO:0100110 + is_a: Illumina + Illumina HiSeq X: + text: Illumina HiSeq X + meaning: GENEPIO:0100111 + is_a: Illumina HiSeq + Illumina HiSeq X Five: + text: Illumina HiSeq X Five + meaning: GENEPIO:0100112 + is_a: Illumina HiSeq X + Illumina HiSeq X Ten: + text: Illumina HiSeq X Ten + meaning: GENEPIO:0100113 + is_a: Illumina HiSeq X + Illumina HiSeq 1000: + text: Illumina HiSeq 1000 + meaning: GENEPIO:0100114 + is_a: Illumina HiSeq + Illumina HiSeq 1500: + text: Illumina HiSeq 1500 + meaning: GENEPIO:0100115 + is_a: Illumina HiSeq + Illumina HiSeq 2000: + text: Illumina HiSeq 2000 + meaning: GENEPIO:0100116 + is_a: Illumina HiSeq + Illumina HiSeq 2500: + text: Illumina HiSeq 2500 + meaning: GENEPIO:0100117 + is_a: Illumina HiSeq + Illumina HiSeq 3000: + text: Illumina HiSeq 3000 + meaning: GENEPIO:0100118 + is_a: Illumina HiSeq + Illumina HiSeq 4000: + text: Illumina HiSeq 4000 + meaning: GENEPIO:0100119 + is_a: Illumina HiSeq + Illumina iSeq: + text: Illumina iSeq + meaning: GENEPIO:0100120 + is_a: Illumina + Illumina iSeq 100: + text: Illumina iSeq 100 + meaning: GENEPIO:0100121 + is_a: Illumina iSeq + Illumina NovaSeq: + text: Illumina NovaSeq + meaning: GENEPIO:0100122 + is_a: Illumina + Illumina NovaSeq 6000: + text: Illumina NovaSeq 6000 + meaning: GENEPIO:0100123 + is_a: Illumina NovaSeq + Illumina MiniSeq: + text: Illumina MiniSeq + meaning: GENEPIO:0100124 + is_a: Illumina + Illumina MiSeq: + text: Illumina MiSeq + meaning: GENEPIO:0100125 + is_a: Illumina + Illumina NextSeq: + text: Illumina NextSeq + meaning: GENEPIO:0100126 + is_a: Illumina + Illumina NextSeq 500: + text: Illumina NextSeq 500 + meaning: GENEPIO:0100127 + is_a: Illumina NextSeq + Illumina NextSeq 550: + text: Illumina NextSeq 550 + meaning: GENEPIO:0100128 + is_a: Illumina NextSeq + Illumina NextSeq 2000: + text: Illumina NextSeq 2000 + meaning: GENEPIO:0100129 + is_a: Illumina NextSeq + Pacific Biosciences: + text: Pacific Biosciences + meaning: GENEPIO:0100130 + PacBio RS: + text: PacBio RS + meaning: GENEPIO:0100131 + is_a: Pacific Biosciences + PacBio RS II: + text: PacBio RS II + meaning: GENEPIO:0100132 + is_a: Pacific Biosciences + PacBio Sequel: + text: PacBio Sequel + meaning: GENEPIO:0100133 + is_a: Pacific Biosciences + PacBio Sequel II: + text: PacBio Sequel II + meaning: GENEPIO:0100134 + is_a: Pacific Biosciences + Ion Torrent: + text: Ion Torrent + meaning: GENEPIO:0100135 + Ion Torrent PGM: + text: Ion Torrent PGM + meaning: GENEPIO:0100136 + is_a: Ion Torrent + Ion Torrent Proton: + text: Ion Torrent Proton + meaning: GENEPIO:0100137 + is_a: Ion Torrent + Ion Torrent S5 XL: + text: Ion Torrent S5 XL + meaning: GENEPIO:0100138 + is_a: Ion Torrent + Ion Torrent S5: + text: Ion Torrent S5 + meaning: GENEPIO:0100139 + is_a: Ion Torrent + Oxford Nanopore: + text: Oxford Nanopore + meaning: GENEPIO:0100140 + Oxford Nanopore GridION: + text: Oxford Nanopore GridION + meaning: GENEPIO:0100141 + is_a: Oxford Nanopore + Oxford Nanopore MinION: + text: Oxford Nanopore MinION + meaning: GENEPIO:0100142 + is_a: Oxford Nanopore + Oxford Nanopore PromethION: + text: Oxford Nanopore PromethION + meaning: GENEPIO:0100143 + is_a: Oxford Nanopore + BGI Genomics: + text: BGI Genomics + meaning: GENEPIO:0100144 + BGI Genomics BGISEQ-500: + text: BGI Genomics BGISEQ-500 + meaning: GENEPIO:0100145 + is_a: BGI Genomics + MGI: + text: MGI + meaning: GENEPIO:0100146 + MGI DNBSEQ-T7: + text: MGI DNBSEQ-T7 + meaning: GENEPIO:0100147 + is_a: MGI + MGI DNBSEQ-G400: + text: MGI DNBSEQ-G400 + meaning: GENEPIO:0100148 + is_a: MGI + MGI DNBSEQ-G400 FAST: + text: MGI DNBSEQ-G400 FAST + meaning: GENEPIO:0100149 + is_a: MGI + MGI DNBSEQ-G50: + text: MGI DNBSEQ-G50 + meaning: GENEPIO:0100150 + is_a: MGI + gene name menu: + name: gene name menu + permissible_values: + E gene (orf4): + text: E gene (orf4) + meaning: GENEPIO:0100151 + exact_mappings: + - CNPHI:E gene + - BIOSAMPLE:E (orf4) + M gene (orf5): + text: M gene (orf5) + meaning: GENEPIO:0100152 + exact_mappings: + - BIOSAMPLE:M (orf5) + N gene (orf9): + text: N gene (orf9) + meaning: GENEPIO:0100153 + exact_mappings: + - BIOSAMPLE:N (orf9) + Spike gene (orf2): + text: Spike gene (orf2) + meaning: GENEPIO:0100154 + exact_mappings: + - BIOSAMPLE:S (orf2) + orf1ab (rep): + text: orf1ab (rep) + meaning: GENEPIO:0100155 + exact_mappings: + - BIOSAMPLE:orf1ab (rep) + orf1a (pp1a): + text: orf1a (pp1a) + meaning: GENEPIO:0100156 + exact_mappings: + - BIOSAMPLE:orf1a (pp1a) + is_a: orf1ab (rep) + nsp11: + text: nsp11 + meaning: GENEPIO:0100157 + exact_mappings: + - BIOSAMPLE:nsp11 + is_a: orf1a (pp1a) + nsp1: + text: nsp1 + meaning: GENEPIO:0100158 + exact_mappings: + - BIOSAMPLE:nsp1 + is_a: orf1ab (rep) + nsp2: + text: nsp2 + meaning: GENEPIO:0100159 + exact_mappings: + - BIOSAMPLE:nsp2 + is_a: orf1ab (rep) + nsp3: + text: nsp3 + meaning: GENEPIO:0100160 + exact_mappings: + - BIOSAMPLE:nsp3 + is_a: orf1ab (rep) + nsp4: + text: nsp4 + meaning: GENEPIO:0100161 + exact_mappings: + - BIOSAMPLE:nsp4 + is_a: orf1ab (rep) + nsp5: + text: nsp5 + meaning: GENEPIO:0100162 + exact_mappings: + - BIOSAMPLE:nsp5 + is_a: orf1ab (rep) + nsp6: + text: nsp6 + meaning: GENEPIO:0100163 + exact_mappings: + - BIOSAMPLE:nsp6 + is_a: orf1ab (rep) + nsp7: + text: nsp7 + meaning: GENEPIO:0100164 + exact_mappings: + - BIOSAMPLE:nsp7 + is_a: orf1ab (rep) + nsp8: + text: nsp8 + meaning: GENEPIO:0100165 + exact_mappings: + - BIOSAMPLE:nsp8 + is_a: orf1ab (rep) + nsp9: + text: nsp9 + meaning: GENEPIO:0100166 + exact_mappings: + - BIOSAMPLE:nsp9 + is_a: orf1ab (rep) + nsp10: + text: nsp10 + meaning: GENEPIO:0100167 + exact_mappings: + - BIOSAMPLE:nsp10 + is_a: orf1ab (rep) + RdRp gene (nsp12): + text: RdRp gene (nsp12) + meaning: GENEPIO:0100168 + exact_mappings: + - BIOSAMPLE:nsp12 (RdRp) + is_a: orf1ab (rep) + hel gene (nsp13): + text: hel gene (nsp13) + meaning: GENEPIO:0100169 + exact_mappings: + - BIOSAMPLE:nsp13 (Hel) + is_a: orf1ab (rep) + exoN gene (nsp14): + text: exoN gene (nsp14) + meaning: GENEPIO:0100170 + exact_mappings: + - BIOSAMPLE:nsp14 (ExoN) + is_a: orf1ab (rep) + nsp15: + text: nsp15 + meaning: GENEPIO:0100171 + exact_mappings: + - BIOSAMPLE:nsp15 + is_a: orf1ab (rep) + nsp16: + text: nsp16 + meaning: GENEPIO:0100172 + exact_mappings: + - BIOSAMPLE:nsp16 + is_a: orf1ab (rep) + orf3a: + text: orf3a + meaning: GENEPIO:0100173 + exact_mappings: + - BIOSAMPLE:orf3a + orf3b: + text: orf3b + meaning: GENEPIO:0100174 + exact_mappings: + - BIOSAMPLE:orf3b + orf6 (ns6): + text: orf6 (ns6) + meaning: GENEPIO:0100175 + exact_mappings: + - BIOSAMPLE:orf6 (ns6) + orf7a: + text: orf7a + meaning: GENEPIO:0100176 + exact_mappings: + - BIOSAMPLE:orf7a + orf7b (ns7b): + text: orf7b (ns7b) + meaning: GENEPIO:0100177 + exact_mappings: + - BIOSAMPLE:orf7b (ns7b) + orf8 (ns8): + text: orf8 (ns8) + meaning: GENEPIO:0100178 + exact_mappings: + - BIOSAMPLE:orf8 (ns8) + orf9b: + text: orf9b + meaning: GENEPIO:0100179 + exact_mappings: + - BIOSAMPLE:orf9b + orf9c: + text: orf9c + meaning: GENEPIO:0100180 + exact_mappings: + - BIOSAMPLE:orf9c + orf10: + text: orf10 + meaning: GENEPIO:0100181 + exact_mappings: + - BIOSAMPLE:orf10 + orf14: + text: orf14 + meaning: GENEPIO:0100182 + exact_mappings: + - BIOSAMPLE:orf14 + SARS-COV-2 5' UTR: + text: SARS-COV-2 5' UTR + meaning: GENEPIO:0100183 + sequence submitted by menu: + name: sequence submitted by menu + permissible_values: + Alberta Precision Labs (APL): + text: Alberta Precision Labs (APL) + Alberta ProvLab North (APLN): + text: Alberta ProvLab North (APLN) + is_a: Alberta Precision Labs (APL) + Alberta ProvLab South (APLS): + text: Alberta ProvLab South (APLS) + is_a: Alberta Precision Labs (APL) + BCCDC Public Health Laboratory: + text: BCCDC Public Health Laboratory + Canadore College: + text: Canadore College + The Centre for Applied Genomics (TCAG): + text: The Centre for Applied Genomics (TCAG) + Dynacare: + text: Dynacare + Dynacare (Brampton): + text: Dynacare (Brampton) + Dynacare (Manitoba): + text: Dynacare (Manitoba) + The Hospital for Sick Children (SickKids): + text: The Hospital for Sick Children (SickKids) + "Laboratoire de sant\xE9 publique du Qu\xE9bec (LSPQ)": + text: "Laboratoire de sant\xE9 publique du Qu\xE9bec (LSPQ)" + Manitoba Cadham Provincial Laboratory: + text: Manitoba Cadham Provincial Laboratory + McGill University: + text: McGill University + McMaster University: + text: McMaster University + National Microbiology Laboratory (NML): + text: National Microbiology Laboratory (NML) + "New Brunswick - Vitalit\xE9 Health Network": + text: "New Brunswick - Vitalit\xE9 Health Network" + Newfoundland and Labrador - Eastern Health: + text: Newfoundland and Labrador - Eastern Health + Newfoundland and Labrador - Newfoundland and Labrador Health Services: + text: Newfoundland and Labrador - Newfoundland and Labrador Health Services + Nova Scotia Health Authority: + text: Nova Scotia Health Authority + Ontario Institute for Cancer Research (OICR): + text: Ontario Institute for Cancer Research (OICR) + Prince Edward Island - Health PEI: + text: Prince Edward Island - Health PEI + Public Health Ontario (PHO): + text: Public Health Ontario (PHO) + Queen's University / Kingston Health Sciences Centre: + text: Queen's University / Kingston Health Sciences Centre + Saskatchewan - Roy Romanow Provincial Laboratory (RRPL): + text: Saskatchewan - Roy Romanow Provincial Laboratory (RRPL) + Sunnybrook Health Sciences Centre: + text: Sunnybrook Health Sciences Centre + Thunder Bay Regional Health Sciences Centre: + text: Thunder Bay Regional Health Sciences Centre + sample collected by menu: + name: sample collected by menu + permissible_values: + Alberta Precision Labs (APL): + text: Alberta Precision Labs (APL) + Alberta ProvLab North (APLN): + text: Alberta ProvLab North (APLN) + is_a: Alberta Precision Labs (APL) + Alberta ProvLab South (APLS): + text: Alberta ProvLab South (APLS) + is_a: Alberta Precision Labs (APL) + BCCDC Public Health Laboratory: + text: BCCDC Public Health Laboratory + Dynacare: + text: Dynacare + Dynacare (Manitoba): + text: Dynacare (Manitoba) + Dynacare (Brampton): + text: Dynacare (Brampton) + Eastern Ontario Regional Laboratory Association: + text: Eastern Ontario Regional Laboratory Association + Hamilton Health Sciences: + text: Hamilton Health Sciences + The Hospital for Sick Children (SickKids): + text: The Hospital for Sick Children (SickKids) + "Laboratoire de sant\xE9 publique du Qu\xE9bec (LSPQ)": + text: "Laboratoire de sant\xE9 publique du Qu\xE9bec (LSPQ)" + Lake of the Woods District Hospital - Ontario: + text: Lake of the Woods District Hospital - Ontario + LifeLabs: + text: LifeLabs + LifeLabs (Ontario): + text: LifeLabs (Ontario) + Manitoba Cadham Provincial Laboratory: + text: Manitoba Cadham Provincial Laboratory + McMaster University: + text: McMaster University + Mount Sinai Hospital: + text: Mount Sinai Hospital + National Microbiology Laboratory (NML): + text: National Microbiology Laboratory (NML) + "New Brunswick - Vitalit\xE9 Health Network": + text: "New Brunswick - Vitalit\xE9 Health Network" + Newfoundland and Labrador - Eastern Health: + text: Newfoundland and Labrador - Eastern Health + Newfoundland and Labrador - Newfoundland and Labrador Health Services: + text: Newfoundland and Labrador - Newfoundland and Labrador Health Services + Nova Scotia Health Authority: + text: Nova Scotia Health Authority + Nunavut: + text: Nunavut + Ontario Institute for Cancer Research (OICR): + text: Ontario Institute for Cancer Research (OICR) + Prince Edward Island - Health PEI: + text: Prince Edward Island - Health PEI + Public Health Ontario (PHO): + text: Public Health Ontario (PHO) + Queen's University / Kingston Health Sciences Centre: + text: Queen's University / Kingston Health Sciences Centre + Saskatchewan - Roy Romanow Provincial Laboratory (RRPL): + text: Saskatchewan - Roy Romanow Provincial Laboratory (RRPL) + Shared Hospital Laboratory: + text: Shared Hospital Laboratory + St. John's Rehab at Sunnybrook Hospital: + text: St. John's Rehab at Sunnybrook Hospital + Switch Health: + text: Switch Health + Sunnybrook Health Sciences Centre: + text: Sunnybrook Health Sciences Centre + Unity Health Toronto: + text: Unity Health Toronto + William Osler Health System: + text: William Osler Health System + geo_loc_name (country) menu: + name: geo_loc_name (country) menu + permissible_values: + Afghanistan: + text: Afghanistan + meaning: GAZ:00006882 + Albania: + text: Albania + meaning: GAZ:00002953 + Algeria: + text: Algeria + meaning: GAZ:00000563 + American Samoa: + text: American Samoa + meaning: GAZ:00003957 + Andorra: + text: Andorra + meaning: GAZ:00002948 + Angola: + text: Angola + meaning: GAZ:00001095 + Anguilla: + text: Anguilla + meaning: GAZ:00009159 + Antarctica: + text: Antarctica + meaning: GAZ:00000462 + Antigua and Barbuda: + text: Antigua and Barbuda + meaning: GAZ:00006883 + Argentina: + text: Argentina + meaning: GAZ:00002928 + Armenia: + text: Armenia + meaning: GAZ:00004094 + Aruba: + text: Aruba + meaning: GAZ:00004025 + Ashmore and Cartier Islands: + text: Ashmore and Cartier Islands + meaning: GAZ:00005901 + Australia: + text: Australia + meaning: GAZ:00000463 + Austria: + text: Austria + meaning: GAZ:00002942 + Azerbaijan: + text: Azerbaijan + meaning: GAZ:00004941 + Bahamas: + text: Bahamas + meaning: GAZ:00002733 + Bahrain: + text: Bahrain + meaning: GAZ:00005281 + Baker Island: + text: Baker Island + meaning: GAZ:00007117 + Bangladesh: + text: Bangladesh + meaning: GAZ:00003750 + Barbados: + text: Barbados + meaning: GAZ:00001251 + Bassas da India: + text: Bassas da India + meaning: GAZ:00005810 + Belarus: + text: Belarus + meaning: GAZ:00006886 + Belgium: + text: Belgium + meaning: GAZ:00002938 + Belize: + text: Belize + meaning: GAZ:00002934 + Benin: + text: Benin + meaning: GAZ:00000904 + Bermuda: + text: Bermuda + meaning: GAZ:00001264 + Bhutan: + text: Bhutan + meaning: GAZ:00003920 + Bolivia: + text: Bolivia + meaning: GAZ:00002511 + Borneo: + text: Borneo + meaning: GAZ:00025355 + Bosnia and Herzegovina: + text: Bosnia and Herzegovina + meaning: GAZ:00006887 + Botswana: + text: Botswana + meaning: GAZ:00001097 + Bouvet Island: + text: Bouvet Island + meaning: GAZ:00001453 + Brazil: + text: Brazil + meaning: GAZ:00002828 + British Virgin Islands: + text: British Virgin Islands + meaning: GAZ:00003961 + Brunei: + text: Brunei + meaning: GAZ:00003901 + Bulgaria: + text: Bulgaria + meaning: GAZ:00002950 + Burkina Faso: + text: Burkina Faso + meaning: GAZ:00000905 + Burundi: + text: Burundi + meaning: GAZ:00001090 + Cambodia: + text: Cambodia + meaning: GAZ:00006888 + Cameroon: + text: Cameroon + meaning: GAZ:00001093 + Canada: + text: Canada + meaning: GAZ:00002560 + Cape Verde: + text: Cape Verde + meaning: GAZ:00001227 + Cayman Islands: + text: Cayman Islands + meaning: GAZ:00003986 + Central African Republic: + text: Central African Republic + meaning: GAZ:00001089 + Chad: + text: Chad + meaning: GAZ:00000586 + Chile: + text: Chile + meaning: GAZ:00002825 + China: + text: China + meaning: GAZ:00002845 + Christmas Island: + text: Christmas Island + meaning: GAZ:00005915 + Clipperton Island: + text: Clipperton Island + meaning: GAZ:00005838 + Cocos Islands: + text: Cocos Islands + meaning: GAZ:00009721 + Colombia: + text: Colombia + meaning: GAZ:00002929 + Comoros: + text: Comoros + meaning: GAZ:00005820 + Cook Islands: + text: Cook Islands + meaning: GAZ:00053798 + Coral Sea Islands: + text: Coral Sea Islands + meaning: GAZ:00005917 + Costa Rica: + text: Costa Rica + meaning: GAZ:00002901 + Cote d'Ivoire: + text: Cote d'Ivoire + meaning: GAZ:00000906 + Croatia: + text: Croatia + meaning: GAZ:00002719 + Cuba: + text: Cuba + meaning: GAZ:00003762 + Curacao: + text: Curacao + meaning: GAZ:00012582 + Cyprus: + text: Cyprus + meaning: GAZ:00004006 + Czech Republic: + text: Czech Republic + meaning: GAZ:00002954 + Democratic Republic of the Congo: + text: Democratic Republic of the Congo + meaning: GAZ:00001086 + Denmark: + text: Denmark + meaning: GAZ:00005852 + Djibouti: + text: Djibouti + meaning: GAZ:00000582 + Dominica: + text: Dominica + meaning: GAZ:00006890 + Dominican Republic: + text: Dominican Republic + meaning: GAZ:00003952 + Ecuador: + text: Ecuador + meaning: GAZ:00002912 + Egypt: + text: Egypt + meaning: GAZ:00003934 + El Salvador: + text: El Salvador + meaning: GAZ:00002935 + Equatorial Guinea: + text: Equatorial Guinea + meaning: GAZ:00001091 + Eritrea: + text: Eritrea + meaning: GAZ:00000581 + Estonia: + text: Estonia + meaning: GAZ:00002959 + Eswatini: + text: Eswatini + meaning: GAZ:00001099 + Ethiopia: + text: Ethiopia + meaning: GAZ:00000567 + Europa Island: + text: Europa Island + meaning: GAZ:00005811 + Falkland Islands (Islas Malvinas): + text: Falkland Islands (Islas Malvinas) + meaning: GAZ:00001412 + Faroe Islands: + text: Faroe Islands + meaning: GAZ:00059206 + Fiji: + text: Fiji + meaning: GAZ:00006891 + Finland: + text: Finland + meaning: GAZ:00002937 + France: + text: France + meaning: GAZ:00003940 + French Guiana: + text: French Guiana + meaning: GAZ:00002516 + French Polynesia: + text: French Polynesia + meaning: GAZ:00002918 + French Southern and Antarctic Lands: + text: French Southern and Antarctic Lands + meaning: GAZ:00003753 + Gabon: + text: Gabon + meaning: GAZ:00001092 + Gambia: + text: Gambia + meaning: GAZ:00000907 + Gaza Strip: + text: Gaza Strip + meaning: GAZ:00009571 + Georgia: + text: Georgia + meaning: GAZ:00004942 + Germany: + text: Germany + meaning: GAZ:00002646 + Ghana: + text: Ghana + meaning: GAZ:00000908 + Gibraltar: + text: Gibraltar + meaning: GAZ:00003987 + Glorioso Islands: + text: Glorioso Islands + meaning: GAZ:00005808 + Greece: + text: Greece + meaning: GAZ:00002945 + Greenland: + text: Greenland + meaning: GAZ:00001507 + Grenada: + text: Grenada + meaning: GAZ:02000573 + Guadeloupe: + text: Guadeloupe + meaning: GAZ:00067142 + Guam: + text: Guam + meaning: GAZ:00003706 + Guatemala: + text: Guatemala + meaning: GAZ:00002936 + Guernsey: + text: Guernsey + meaning: GAZ:00001550 + Guinea: + text: Guinea + meaning: GAZ:00000909 + Guinea-Bissau: + text: Guinea-Bissau + meaning: GAZ:00000910 + Guyana: + text: Guyana + meaning: GAZ:00002522 + Haiti: + text: Haiti + meaning: GAZ:00003953 + Heard Island and McDonald Islands: + text: Heard Island and McDonald Islands + meaning: GAZ:00009718 + Honduras: + text: Honduras + meaning: GAZ:00002894 + Hong Kong: + text: Hong Kong + meaning: GAZ:00003203 + Howland Island: + text: Howland Island + meaning: GAZ:00007120 + Hungary: + text: Hungary + meaning: GAZ:00002952 + Iceland: + text: Iceland + meaning: GAZ:00000843 + India: + text: India + meaning: GAZ:00002839 + Indonesia: + text: Indonesia + meaning: GAZ:00003727 + Iran: + text: Iran + meaning: GAZ:00004474 + Iraq: + text: Iraq + meaning: GAZ:00004483 + Ireland: + text: Ireland + meaning: GAZ:00002943 + Isle of Man: + text: Isle of Man + meaning: GAZ:00052477 + Israel: + text: Israel + meaning: GAZ:00002476 + Italy: + text: Italy + meaning: GAZ:00002650 + Jamaica: + text: Jamaica + meaning: GAZ:00003781 + Jan Mayen: + text: Jan Mayen + meaning: GAZ:00005853 + Japan: + text: Japan + meaning: GAZ:00002747 + Jarvis Island: + text: Jarvis Island + meaning: GAZ:00007118 + Jersey: + text: Jersey + meaning: GAZ:00001551 + Johnston Atoll: + text: Johnston Atoll + meaning: GAZ:00007114 + Jordan: + text: Jordan + meaning: GAZ:00002473 + Juan de Nova Island: + text: Juan de Nova Island + meaning: GAZ:00005809 + Kazakhstan: + text: Kazakhstan + meaning: GAZ:00004999 + Kenya: + text: Kenya + meaning: GAZ:00001101 + Kerguelen Archipelago: + text: Kerguelen Archipelago + meaning: GAZ:00005682 + Kingman Reef: + text: Kingman Reef + meaning: GAZ:00007116 + Kiribati: + text: Kiribati + meaning: GAZ:00006894 + Kosovo: + text: Kosovo + meaning: GAZ:00011337 + Kuwait: + text: Kuwait + meaning: GAZ:00005285 + Kyrgyzstan: + text: Kyrgyzstan + meaning: GAZ:00006893 + Laos: + text: Laos + meaning: GAZ:00006889 + Latvia: + text: Latvia + meaning: GAZ:00002958 + Lebanon: + text: Lebanon + meaning: GAZ:00002478 + Lesotho: + text: Lesotho + meaning: GAZ:00001098 + Liberia: + text: Liberia + meaning: GAZ:00000911 + Libya: + text: Libya + meaning: GAZ:00000566 + Liechtenstein: + text: Liechtenstein + meaning: GAZ:00003858 + Line Islands: + text: Line Islands + meaning: GAZ:00007144 + Lithuania: + text: Lithuania + meaning: GAZ:00002960 + Luxembourg: + text: Luxembourg + meaning: GAZ:00002947 + Macau: + text: Macau + meaning: GAZ:00003202 + Madagascar: + text: Madagascar + meaning: GAZ:00001108 + Malawi: + text: Malawi + meaning: GAZ:00001105 + Malaysia: + text: Malaysia + meaning: GAZ:00003902 + Maldives: + text: Maldives + meaning: GAZ:00006924 + Mali: + text: Mali + meaning: GAZ:00000584 + Malta: + text: Malta + meaning: GAZ:00004017 + Marshall Islands: + text: Marshall Islands + meaning: GAZ:00007161 + Martinique: + text: Martinique + meaning: GAZ:00067143 + Mauritania: + text: Mauritania + meaning: GAZ:00000583 + Mauritius: + text: Mauritius + meaning: GAZ:00003745 + Mayotte: + text: Mayotte + meaning: GAZ:00003943 + Mexico: + text: Mexico + meaning: GAZ:00002852 + Micronesia: + text: Micronesia + meaning: GAZ:00005862 + Midway Islands: + text: Midway Islands + meaning: GAZ:00007112 + Moldova: + text: Moldova + meaning: GAZ:00003897 + Monaco: + text: Monaco + meaning: GAZ:00003857 + Mongolia: + text: Mongolia + meaning: GAZ:00008744 + Montenegro: + text: Montenegro + meaning: GAZ:00006898 + Montserrat: + text: Montserrat + meaning: GAZ:00003988 + Morocco: + text: Morocco + meaning: GAZ:00000565 + Mozambique: + text: Mozambique + meaning: GAZ:00001100 + Myanmar: + text: Myanmar + meaning: GAZ:00006899 + Namibia: + text: Namibia + meaning: GAZ:00001096 + Nauru: + text: Nauru + meaning: GAZ:00006900 + Navassa Island: + text: Navassa Island + meaning: GAZ:00007119 + Nepal: + text: Nepal + meaning: GAZ:00004399 + Netherlands: + text: Netherlands + meaning: GAZ:00002946 + New Caledonia: + text: New Caledonia + meaning: GAZ:00005206 + New Zealand: + text: New Zealand + meaning: GAZ:00000469 + Nicaragua: + text: Nicaragua + meaning: GAZ:00002978 + Niger: + text: Niger + meaning: GAZ:00000585 + Nigeria: + text: Nigeria + meaning: GAZ:00000912 + Niue: + text: Niue + meaning: GAZ:00006902 + Norfolk Island: + text: Norfolk Island + meaning: GAZ:00005908 + North Korea: + text: North Korea + meaning: GAZ:00002801 + North Macedonia: + text: North Macedonia + meaning: GAZ:00006895 + North Sea: + text: North Sea + meaning: GAZ:00002284 + Northern Mariana Islands: + text: Northern Mariana Islands + meaning: GAZ:00003958 + Norway: + text: Norway + meaning: GAZ:00002699 + Oman: + text: Oman + meaning: GAZ:00005283 + Pakistan: + text: Pakistan + meaning: GAZ:00005246 + Palau: + text: Palau + meaning: GAZ:00006905 + Panama: + text: Panama + meaning: GAZ:00002892 + Papua New Guinea: + text: Papua New Guinea + meaning: GAZ:00003922 + Paracel Islands: + text: Paracel Islands + meaning: GAZ:00010832 + Paraguay: + text: Paraguay + meaning: GAZ:00002933 + Peru: + text: Peru + meaning: GAZ:00002932 + Philippines: + text: Philippines + meaning: GAZ:00004525 + Pitcairn Islands: + text: Pitcairn Islands + meaning: GAZ:00005867 + Poland: + text: Poland + meaning: GAZ:00002939 + Portugal: + text: Portugal + meaning: GAZ:00004126 + Puerto Rico: + text: Puerto Rico + meaning: GAZ:00006935 + Qatar: + text: Qatar + meaning: GAZ:00005286 + Republic of the Congo: + text: Republic of the Congo + meaning: GAZ:00001088 + Reunion: + text: Reunion + meaning: GAZ:00003945 + Romania: + text: Romania + meaning: GAZ:00002951 + Ross Sea: + text: Ross Sea + meaning: GAZ:00023304 + Russia: + text: Russia + meaning: GAZ:00002721 + Rwanda: + text: Rwanda + meaning: GAZ:00001087 + Saint Helena: + text: Saint Helena + meaning: GAZ:00000849 + Saint Kitts and Nevis: + text: Saint Kitts and Nevis + meaning: GAZ:00006906 + Saint Lucia: + text: Saint Lucia + meaning: GAZ:00006909 + Saint Pierre and Miquelon: + text: Saint Pierre and Miquelon + meaning: GAZ:00003942 + Saint Martin: + text: Saint Martin + meaning: GAZ:00005841 + Saint Vincent and the Grenadines: + text: Saint Vincent and the Grenadines + meaning: GAZ:02000565 + Samoa: + text: Samoa + meaning: GAZ:00006910 + San Marino: + text: San Marino + meaning: GAZ:00003102 + Sao Tome and Principe: + text: Sao Tome and Principe + meaning: GAZ:00006927 + Saudi Arabia: + text: Saudi Arabia + meaning: GAZ:00005279 + Senegal: + text: Senegal + meaning: GAZ:00000913 + Serbia: + text: Serbia + meaning: GAZ:00002957 + Seychelles: + text: Seychelles + meaning: GAZ:00006922 + Sierra Leone: + text: Sierra Leone + meaning: GAZ:00000914 + Singapore: + text: Singapore + meaning: GAZ:00003923 + Sint Maarten: + text: Sint Maarten + meaning: GAZ:00012579 + Slovakia: + text: Slovakia + meaning: GAZ:00002956 + Slovenia: + text: Slovenia + meaning: GAZ:00002955 + Solomon Islands: + text: Solomon Islands + meaning: GAZ:00005275 + Somalia: + text: Somalia + meaning: GAZ:00001104 + South Africa: + text: South Africa + meaning: GAZ:00001094 + South Georgia and the South Sandwich Islands: + text: South Georgia and the South Sandwich Islands + meaning: GAZ:00003990 + South Korea: + text: South Korea + meaning: GAZ:00002802 + South Sudan: + text: South Sudan + meaning: GAZ:00233439 + Spain: + text: Spain + meaning: GAZ:00000591 + Spratly Islands: + text: Spratly Islands + meaning: GAZ:00010831 + Sri Lanka: + text: Sri Lanka + meaning: GAZ:00003924 + State of Palestine: + text: State of Palestine + meaning: GAZ:00002475 + Sudan: + text: Sudan + meaning: GAZ:00000560 + Suriname: + text: Suriname + meaning: GAZ:00002525 + Svalbard: + text: Svalbard + meaning: GAZ:00005396 + Swaziland: + text: Swaziland + meaning: GAZ:00001099 + Sweden: + text: Sweden + meaning: GAZ:00002729 + Switzerland: + text: Switzerland + meaning: GAZ:00002941 + Syria: + text: Syria + meaning: GAZ:00002474 + Taiwan: + text: Taiwan + meaning: GAZ:00005341 + Tajikistan: + text: Tajikistan + meaning: GAZ:00006912 + Tanzania: + text: Tanzania + meaning: GAZ:00001103 + Thailand: + text: Thailand + meaning: GAZ:00003744 + Timor-Leste: + text: Timor-Leste + meaning: GAZ:00006913 + Togo: + text: Togo + meaning: GAZ:00000915 + Tokelau: + text: Tokelau + meaning: GAZ:00260188 + Tonga: + text: Tonga + meaning: GAZ:00006916 + Trinidad and Tobago: + text: Trinidad and Tobago + meaning: GAZ:00003767 + Tromelin Island: + text: Tromelin Island + meaning: GAZ:00005812 + Tunisia: + text: Tunisia + meaning: GAZ:00000562 + Turkey: + text: Turkey + meaning: GAZ:00000558 + Turkmenistan: + text: Turkmenistan + meaning: GAZ:00005018 + Turks and Caicos Islands: + text: Turks and Caicos Islands + meaning: GAZ:00003955 + Tuvalu: + text: Tuvalu + meaning: GAZ:00009715 + United States of America: + text: United States of America + meaning: GAZ:00002459 + Uganda: + text: Uganda + meaning: GAZ:00001102 + Ukraine: + text: Ukraine + meaning: GAZ:00002724 + United Arab Emirates: + text: United Arab Emirates + meaning: GAZ:00005282 + United Kingdom: + text: United Kingdom + meaning: GAZ:00002637 + Uruguay: + text: Uruguay + meaning: GAZ:00002930 + Uzbekistan: + text: Uzbekistan + meaning: GAZ:00004979 + Vanuatu: + text: Vanuatu + meaning: GAZ:00006918 + Venezuela: + text: Venezuela + meaning: GAZ:00002931 + Viet Nam: + text: Viet Nam + meaning: GAZ:00003756 + Virgin Islands: + text: Virgin Islands + meaning: GAZ:00003959 + Wake Island: + text: Wake Island + meaning: GAZ:00007111 + Wallis and Futuna: + text: Wallis and Futuna + meaning: GAZ:00007191 + West Bank: + text: West Bank + meaning: GAZ:00009572 + Western Sahara: + text: Western Sahara + meaning: GAZ:00000564 + Yemen: + text: Yemen + meaning: GAZ:00005284 + Zambia: + text: Zambia + meaning: GAZ:00001107 + Zimbabwe: + text: Zimbabwe + meaning: GAZ:00001106 types: WhitespaceMinimizedString: name: WhitespaceMinimizedString diff --git a/web/templates/canada_covid19/schema_enums.tsv b/web/templates/canada_covid19/schema_enums.tsv index dbfb1cea..a1949db3 100644 --- a/web/templates/canada_covid19/schema_enums.tsv +++ b/web/templates/canada_covid19/schema_enums.tsv @@ -1208,5 +1208,4 @@ geo_loc_name (country) menu GAZ:00006882 Afghanistan GAZ:00005284 Yemen GAZ:00001107 Zambia GAZ:00001106 Zimbabwe - - \ No newline at end of file + \ No newline at end of file