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minor edits and more table column width fiddling
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paper/paper.md

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@@ -37,12 +37,12 @@ algorithms more generally such as mixed radix representation, permutation
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inverse computation, etc.
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The motivation and origin of this library is our research on fitness landscape analysis
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for permutation optimization problems [@cicirello2018a; @cicirello2016; @cicirello2014; @cicirello2013]. In a
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for permutation optimization [@cicirello2018a; @cicirello2016; @cicirello2014; @cicirello2013]. In a
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permutation optimization problem, solutions are represented by
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permutations of some set, and the objective is to maximize
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or minimize some function. For example, a solution
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to a traveling salesperson problem (TSP) is the permutation of the set of cities
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that corresponds to the minimal cost tour of the cities.
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to a traveling salesperson problem is the permutation of the set of cities
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that corresponds to the minimal cost tour.
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During our research, we developed a Java library of permutation distance
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metrics. Most of the distance metrics in the literature are described mathematically with
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no source code available. Thus, our library offers convenient access to efficient
@@ -92,7 +92,7 @@ The following table summarizes the permutation distances in the library, their r
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($n$ is permutation length), and whether they satisfy the metric requirements.
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Distance | Runtime | Metric? | Citations
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---------- | ------ | ---- | ----------
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---------- | ------ | --- | -----------
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acyclic edge distance | $O(n)$ | pseudo | [@ronald1997; @ronald1995]
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cyclic edge distance | $O(n)$ | pseudo | [@ronald1997; @ronald1995]
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cyclic r-type distance | $O(n)$ | pseudo | [@cicirello2016]
@@ -105,14 +105,14 @@ Kendall tau distance | $O(n \lg n)$ | yes | [@kendall1938; @meila2010; @fagin200
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Lee distance | $O(n)$ | yes | [@lee58]
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r-type distance | $O(n)$ | yes | [@campos2005; @marti2005]
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reinsertion distance | $O(n \lg n)$ | yes | [@cicirello2016; @cicirello2013]
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reversal distance | Init: $O(n!n^3)$ Compute: $O(n^2)$ | yes | [@cicirello2016; @caprara1997]
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reversal distance | Init: $O(n!n^3)$ Calc: $O(n^2)$ | yes | [@cicirello2016; @caprara1997]
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squared deviation distance | $O(n)$ | yes | [@sevaux2005]
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The next table summarizes the metrics on
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sequences ($n \leq m$ are the lengths of the compared sequences).
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Distance | Runtime | Metric? | Citations
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---------- | ------ | ---- | ----------
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---------- | ------ | --- | -----------
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edit distance | $O(n*m)$ | yes | [@wagner74]
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exact match distance | $O(n)$ | yes | [@ronald1998]
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Kendall tau sequence distance | $O(n \lg n)$ | yes | [@kendall1938; @cicirello2018b]

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