Error in PRSice execution: "Error in if (argv_c[[i]]) command = paste(command, " --", i, sep = "") : missing value where TRUE/FALSE needed"

[laiyongjie]

Hi,
I'm encountering an error when running PRSice-2. The command I'm using is as follows:

Rscript ~/PRsice/PRSice.R --prsice ~/PRsice/PRSice_linux --base ~/AD_gwas_clean.txt --target /home/EXTRADATA/RAW_DATA/bulk/ukb_imp_chr#_v3 --pheno ~/AD_phenotype.txt --chr Chromosome --A1 Effect_allele --snp MarkerName --A2 Non_Effect_allele --or OR --pvalue Pvalue --type bgen --keep-ambig --allow-inter --out AD_PRS

However, I get the following error message:

Error in if (argv_c[[i]]) command = paste(command, " --", i, sep = "") :
missing value where TRUE/FALSE needed
Execution halted

Details:
PRSice version: 2.3.5 (Linux)
It seems like an issue related to missing values, but I’m not sure where the problem lies.
Any help or suggestions would be appreciated!
Thanks in advance.

[choishingwan]

Was this still an issue? I couldn't tell what's the problem just by this. If this is still a problem, please reopen the issue.

Sam