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Finetuning Espaloma guide? #199

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jarvist opened this issue Nov 30, 2023 · 4 comments
Open

Finetuning Espaloma guide? #199

jarvist opened this issue Nov 30, 2023 · 4 comments

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@jarvist
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jarvist commented Nov 30, 2023

Is there a guide, or any additional information, on fine-tuning Espaloma? (i.e. taking the general model, and then supplementing with some molecule-specific electronic structure calculations, retraining with early stopping or regularisation)

Similarly, is there any documentation on how the main release models are trained? I note in the release notes A manuscript describing the complete fitting process and assessment is forthcoming - but is there anything to go on while that is in preparation?
I very quickly get lost amongst the QCArchive / QCFractal etc.

@ijpulidos
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@jarvist Thanks for your interest in our tools. You are correct, we should improve the documentation and discoverability of how we are doing these things. We appreciate you bringing this to our attention.

While not perfect, there's a good amount of documentation on how to train and evaluate espaloma from https://github.com/choderalab/refit-espaloma (this is for the latest espaloma 0.3.1 and 0.3.2 models), I hope you find this helpful.

@jarvist
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jarvist commented Dec 15, 2023

Thanks! Yes, that looks very useful.
I think the QCArchive might be a bit of a hurdle to overcome: I imagine it would be a lot more transparent to see the actual DFT calculations, similarly this would be necessary to do any active learning (& validation at the same step).

@JonathanHungerland
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@jarvist I was looking for the very same thing and started to go through the guide. Did you succeed in fine-tuning towards a molecule of yours?

@jarvist
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jarvist commented Jul 9, 2024 via email

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