diff --git a/.github/workflows/generate_curated_lists.yml b/.github/workflows/generate_curated_lists.yml index 980965fd..54675669 100644 --- a/.github/workflows/generate_curated_lists.yml +++ b/.github/workflows/generate_curated_lists.yml @@ -15,10 +15,10 @@ jobs: uses: actions/checkout@v3 with: ref: ${{ github.event.pull_request.head.ref }} - - name: Set up Python 3.8 + - name: Set up Python 3.11 uses: actions/setup-python@v1 with: - python-version: 3.8 + python-version: 3.11 - name: Python cache uses: actions/cache@v1 with: @@ -36,12 +36,12 @@ jobs: - name: ontology-processing run: | python3 ./tools/ontology-builder/src/curated_lists.py - - name: Commit - run: | git add ./tools/ontology-builder/src/ontology-references/tissue_general_list.json git add ./tools/ontology-builder/src/ontology-references/organ_list.json git add ./tools/ontology-builder/src/ontology-references/cell_class_list.json git add ./tools/ontology-builder/src/ontology-references/cell_subclass_list.json git add ./tools/ontology-builder/src/ontology-references/system_list.json + - name: Commit + run: | git commit -m "AUTO: update curated_lists" git push diff --git a/tools/ontology-builder/src/curated_lists.py b/tools/ontology-builder/src/curated_lists.py index 25edd7e8..8967718b 100644 --- a/tools/ontology-builder/src/curated_lists.py +++ b/tools/ontology-builder/src/curated_lists.py @@ -1,4 +1,3 @@ -# # # Hand-Curation of Systems and Organs # ## Tissue Constants # ### Hand-curated systems.