DESCRIPTION

Package: atSNP
Type: Package
Title: Affinity test for identifying regulatory SNPs
Version: 1.1.3
Date: 2020-01-18
Authors@R: c(person(given = "Chandler", family = "Zuo", role = "aut"),
        person(given = "Sunyoung",family = "Shin",role = c("aut", "cre"), email = "sunyoung.shin@utdallas.edu"),
        person(given = "Sunduz", family = "Keles", role = "aut"))
Description: atSNP performs affinity tests of motif matches with the SNP or the reference genomes and SNP-led changes in motif matches.
License: GPL-2
LinkingTo: Rcpp
Depends: R (>= 3.6)
LazyData: true
Suggests: testthat, BiocStyle, knitr, rmarkdown
Imports: BSgenome, BiocFileCache, BiocParallel, Biostrings, Rcpp, data.table, ggplot2, grDevices, graphics, grid, motifStack, rappdirs, stats, testit, utils
RoxygenNote: 7.1.1
biocViews: Software, ChIPSeq, GenomeAnnotation, MotifAnnotation, Visualization
URL: https://github.com/sunyoungshin/atSNP
BugReports: https://github.com/sunyoungshin/atSNP/issues
VignetteBuilder: rmarkdown
Encoding: UTF-8