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Do not clear MaximumAcceptableProbability pool in referenceless
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micall/utils/referenceless_contig_stitcher.py

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@@ -316,7 +316,6 @@ def calculate_all_paths(contigs: Sequence[ContigWithAligner]) -> Iterator[Contig
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yield from paths
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logger.debug("Cycle %s started with %s paths.", cycle, len(paths))
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max_acceptable_prob.paths.clear()
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calc_multiple_extensions(finder, max_acceptable_prob, paths, contigs)
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extensions = tuple(max_acceptable_prob.paths)
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paths = tuple(filter_extensions(existing, extensions))

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