resnet.py

import math
from functools import partial

import torch
import torch.nn as nn
import torch.nn.functional as F




class SE_Block(nn.Module):
    """
    3D extension of Squeeze-and-Excitation (SE) block described in:
        *Hu et al., Squeeze-and-Excitation Networks, arXiv:1709.01507*
        *Zhu et al., AnatomyNet, arXiv:arXiv:1808.05238*
    """

    def __init__(self, num_channels, reduction_ratio=2):
        """
        :param num_channels: No of input channels
        :param reduction_ratio: By how much should the num_channels should be reduced
        """
        super(SE_Block, self).__init__()
        self.avg_pool = nn.AdaptiveAvgPool3d(1)
        num_channels_reduced = num_channels // reduction_ratio
        self.reduction_ratio = reduction_ratio
        self.fc1 = nn.Linear(num_channels, num_channels_reduced, bias=True)
        self.fc2 = nn.Linear(num_channels_reduced, num_channels, bias=True)
        self.relu = nn.ReLU()
        self.sigmoid = nn.Sigmoid()

    def forward(self, input_tensor):
        """
        :param input_tensor: X, shape = (batch_size, num_channels, D, H, W)
        :return: output tensor
        """
        batch_size, num_channels, D, H, W = input_tensor.size()
        # Average along each channel
        squeeze_tensor = self.avg_pool(input_tensor)

        # channel excitation
        fc_out_1 = self.relu(self.fc1(squeeze_tensor.view(batch_size, num_channels)))
        fc_out_2 = self.sigmoid(self.fc2(fc_out_1))

        output_tensor = torch.mul(input_tensor, fc_out_2.view(batch_size, num_channels, 1, 1, 1))

        return output_tensor


def get_inplanes():
    return [64, 128, 256, 512]


def conv3x3x3(in_planes, out_planes, stride=1):
    return nn.Conv3d(in_planes,
                     out_planes,
                     kernel_size=3,
                     stride=stride,
                     padding=1,
                     bias=False)


def conv1x1x1(in_planes, out_planes, stride=1):
    return nn.Conv3d(in_planes,
                     out_planes,
                     kernel_size=1,
                     stride=stride,
                     bias=False)


class BasicBlock(nn.Module):
    expansion = 1

    def __init__(self, in_planes, planes, stride=1, downsample=None):
        super().__init__()

        self.conv1 = conv3x3x3(in_planes, planes, stride)
        self.bn1 = nn.BatchNorm3d(planes)
        self.relu = nn.ReLU(inplace=True)
        self.conv2 = conv3x3x3(planes, planes)
        self.bn2 = nn.BatchNorm3d(planes)
        self.downsample = downsample
        self.stride = stride
        self.se = SE_Block(planes, reduction_ratio=4)

    def forward(self, x):
        residual = x

        out = self.conv1(x)
        out = self.bn1(out)
        out = self.relu(out)

        out = self.conv2(out)
        out = self.bn2(out)
        
        try:
            out = self.se(out)
        except:
            import pdb 
            pdb.set_trace()
            
            
        if self.downsample is not None:
            residual = self.downsample(x)

        try:
            out += residual
            out = self.relu(out)
        except:
            import pdb 
            pdb.set_trace()

        return out


class Bottleneck(nn.Module):
    expansion = 4

    def __init__(self, in_planes, planes, stride=1, downsample=None):
        super().__init__()

        self.conv1 = conv1x1x1(in_planes, planes)
        self.bn1 = nn.BatchNorm3d(planes)
        self.conv2 = conv3x3x3(planes, planes, stride)
        self.bn2 = nn.BatchNorm3d(planes)
        self.conv3 = conv1x1x1(planes, planes * self.expansion)
        self.bn3 = nn.BatchNorm3d(planes * self.expansion)
        self.relu = nn.ReLU(inplace=True)
        self.downsample = downsample
        self.stride = stride
        self.se = SE_Block(planes* self.expansion, reduction_ratio=4)

    def forward(self, x):
        residual = x

        out = self.conv1(x)
        out = self.bn1(out)
        out = self.relu(out)

        out = self.conv2(out)
        out = self.bn2(out)
        out = self.relu(out)

        out = self.conv3(out)
        out = self.bn3(out)
        
        out = self.se(out)

            
        if self.downsample is not None:
            residual = self.downsample(x)
        try:
            out += residual
            out = self.relu(out)
        except:
            import pdb 
            pdb.set_trace()
            
            
        return out


    

class ResNetParallel(nn.Module):
    def __init__(self,nolayers,shapepath,regionpath):
        super(ResNetParallel,self).__init__()
        
        self.n1 = generate_model(nolayers)
        self.n1.load_state_dict(torch.load(shapepath))
        
        self.n2 = generate_model(nolayers)
        self.n2.load_state_dict(torch.load(regionpath))
        
    
    def forward(self, x,y):
        
        
        out1,featx = self.n1(x)
        out2,featy = self.n2(y)
    
        feat = torch.cat((featx,featy),1)
        
        out = out1.add(out2)
        
        return out, feat
    
    
class ResNet(nn.Module):

    def __init__(self,
                 block,
                 layers,
                 block_inplanes,
                 n_input_channels=2,
                 conv1_t_size=7,
                 conv1_t_stride=1,
                 no_max_pool=False,
                 shortcut_type='B',
                 widen_factor=1.0,
                 n_classes=2):
        super().__init__()

        block_inplanes = [int(x * widen_factor) for x in block_inplanes]

        self.in_planes = block_inplanes[0]
        self.no_max_pool = no_max_pool

        self.conv1 = nn.Conv3d(n_input_channels,
                               self.in_planes,
                               kernel_size=(conv1_t_size, 7, 7),
                               stride=(conv1_t_stride, 2, 2),
                               padding=(conv1_t_size // 2, 3, 3),
                               bias=False)
        self.bn1 = nn.BatchNorm3d(self.in_planes)
        self.relu = nn.ReLU(inplace=True)
        self.maxpool = nn.MaxPool3d(kernel_size=3, stride=2, padding=1)
        self.layer1 = self._make_layer(block, block_inplanes[0], layers[0],
                                       shortcut_type)
        self.layer2 = self._make_layer(block,
                                       block_inplanes[1],
                                       layers[1],
                                       shortcut_type,
                                       stride=2)
        self.layer3 = self._make_layer(block,
                                       block_inplanes[2],
                                       layers[2],
                                       shortcut_type,
                                       stride=2)
        self.layer4 = self._make_layer(block,
                                       block_inplanes[3],
                                       layers[3],
                                       shortcut_type,
                                       stride=2)

        self.avgpool = nn.AdaptiveAvgPool3d((1, 1, 1))
        self.fc = nn.Linear(block_inplanes[3] * block.expansion, n_classes)

        for m in self.modules():
            if isinstance(m, nn.Conv3d):
                nn.init.kaiming_normal_(m.weight,
                                        mode='fan_out',
                                        nonlinearity='relu')
            elif isinstance(m, nn.BatchNorm3d):
                nn.init.constant_(m.weight, 1)
                nn.init.constant_(m.bias, 0)

    def _downsample_basic_block(self, x, planes, stride):
        out = F.avg_pool3d(x, kernel_size=1, stride=stride)
        zero_pads = torch.zeros(out.size(0), planes - out.size(1), out.size(2),
                                out.size(3), out.size(4))
        if isinstance(out.data, torch.cuda.FloatTensor):
            zero_pads = zero_pads.cuda()

        out = torch.cat([out.data, zero_pads], dim=1)

        return out

    def _make_layer(self, block, planes, blocks, shortcut_type, stride=1):
        downsample = None
        if stride != 1 or self.in_planes != planes * block.expansion:
            if shortcut_type == 'A':
                downsample = partial(self._downsample_basic_block,
                                     planes=planes * block.expansion,
                                     stride=stride)
            else:
                downsample = nn.Sequential(
                    conv1x1x1(self.in_planes, planes * block.expansion, stride),
                    nn.BatchNorm3d(planes * block.expansion))

        layers = []
        layers.append(
            block(in_planes=self.in_planes,
                  planes=planes,
                  stride=stride,
                  downsample=downsample))
        self.in_planes = planes * block.expansion
        for i in range(1, blocks):
            layers.append(block(self.in_planes, planes))

        return nn.Sequential(*layers)

    def forward(self, x):
        x = self.conv1(x)
        x = self.bn1(x)
        x = self.relu(x)
        if not self.no_max_pool:
            x = self.maxpool(x)

        x = self.layer1(x)
        x = self.layer2(x)
        x = self.layer3(x)
        x = self.layer4(x)

        x = self.avgpool(x)

        x = x.view(x.size(0), -1)
        feat = x 
        x = self.fc(x)

        return x, feat


def generate_model(model_depth, **kwargs):
    assert model_depth in [10, 18, 34, 50, 101, 152, 200]

    if model_depth == 10:
        model = ResNet(BasicBlock, [1, 1, 1, 1], get_inplanes(), **kwargs)
    elif model_depth == 18:
        model = ResNet(BasicBlock, [2, 2, 2, 2], get_inplanes(), **kwargs)
    elif model_depth == 34:
        model = ResNet(BasicBlock, [3, 4, 6, 3], get_inplanes(), **kwargs)
    elif model_depth == 50:
        model = ResNet(Bottleneck, [3, 4, 6, 3], get_inplanes(), **kwargs)
    elif model_depth == 101:
        model = ResNet(Bottleneck, [3, 4, 23, 3], get_inplanes(), **kwargs)
    elif model_depth == 152:
        model = ResNet(Bottleneck, [3, 8, 36, 3], get_inplanes(), **kwargs)
    elif model_depth == 200:
        model = ResNet(Bottleneck, [3, 24, 36, 3], get_inplanes(), **kwargs)

    return model