CI #1630
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| # GitHub has started calling new repo's first branch "main" https://github.com/github/renaming | |
| # Existing codes likely still have "master" as the primary branch | |
| # Both are tracked here to keep legacy and new codes working | |
| push: | |
| branches: | |
| - '**' | |
| pull_request: | |
| branches: | |
| - '**' | |
| schedule: | |
| # Nightly tests run on master by default: | |
| # Scheduled workflows run on the latest commit on the default or base branch. | |
| # (from https://help.github.com/en/actions/reference/events-that-trigger-workflows#scheduled-events-schedule) | |
| - cron: "0 0 * * *" | |
| workflow_dispatch: | |
| inputs: | |
| CACHE_NUMBER: | |
| type: number | |
| default: 0 | |
| RUN_TESTS: | |
| type: boolean | |
| default: true | |
| jobs: | |
| test: | |
| name: Test on ${{ matrix.os }}, Python ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| # os: [macOS-latest, ubuntu-latest] | |
| os: [ubuntu-latest] | |
| python-version: [3.11] | |
| include: | |
| - os: ubuntu-latest | |
| label: linux-64 | |
| # prefix: /usr/share/miniconda3/envs/openmm7.6 | |
| environment-file: devtools/conda-envs/fep_env.yaml | |
| miniforge-variant: Mambaforge | |
| miniforge-version: 4.9.2-4 | |
| #- os: macos-latest | |
| # label: osx-64 | |
| # # prefix: /Users/runner/miniconda3/envs/openmm7.6 | |
| # environment-file: devtools/conda-envs/openmm7.6.yaml | |
| # miniforge-variant: Mambaforge-pypy3 | |
| steps: | |
| - uses: actions/[email protected] | |
| - name: Additional info about the build | |
| shell: bash | |
| run: | | |
| uname -a | |
| df -h | |
| ulimit -a | |
| - name: Set cache date | |
| run: echo "DATE=$(date +'%Y%m%d')" >> $GITHUB_ENV | |
| - name: Make Cache (no worflow_dispatch) | |
| if: ${{ github.event_name != 'workflow_dispatch' }} | |
| uses: actions/[email protected] | |
| with: | |
| path: ~/conda_pkgs_dir # ${{ matrix.prefix }} | |
| # Increase the last number (0) to reset cache manually | |
| key: ${{ matrix.label }}-conda-${{ hashFiles('devtools/conda-envs/fep_env.yaml') }}-${{ env.DATE }}-0 | |
| id: cache1 | |
| - name: Make Cache (worflow_dispatch) | |
| if: ${{ github.event_name == 'workflow_dispatch' }} | |
| uses: actions/[email protected] | |
| with: | |
| path: ~/conda_pkgs_dir # ${{ matrix.prefix }} | |
| key: ${{ matrix.label }}-conda-${{ hashFiles('devtools/conda-envs/fep_env.yaml') }}-${{ env.DATE }}-${{ inputs.CACHE_NUMBER }} | |
| id: cache2 | |
| # More info on options: https://github.com/conda-incubator/setup-miniconda | |
| - uses: conda-incubator/[email protected] | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| condarc-file: ${{ matrix.condarc-file }} | |
| environment-file: ${{ matrix.environment-file }} | |
| miniforge-variant: ${{ matrix.miniforge-variant }} | |
| miniforge-version: ${{ matrix.miniforge-version }} | |
| use-mamba: true | |
| # mamba-version: "*" | |
| # environment-file: devtools/conda-envs/fep_env.yaml | |
| channels: conda-forge,defaults | |
| # channel-priority: true | |
| activate-environment: fep | |
| #auto-update-conda: false | |
| auto-activate-base: false | |
| #show-channel-urls: true | |
| use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly! | |
| - name: Update environment | |
| run: conda env update -n fep -f devtools/conda-envs/fep_env.yaml | |
| - name: Install package | |
| # conda setup requires this special shell | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install . --no-deps | |
| conda info | |
| conda list | |
| conda config --show-sources | |
| conda config --show | |
| printenv | sort | |
| - name: Run tests | |
| # conda setup requires this special shell | |
| shell: bash -l {0} | |
| run: | | |
| conda activate fep | |
| pytest -v --cov=transformato --cov-report=xml --color=yes transformato/tests/ | |
| - name: CodeCov | |
| uses: codecov/[email protected] | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| name: codecov-${{ matrix.os }}-py${{ matrix.python-version }} |