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carushi edited this page Jun 22, 2016 · 47 revisions

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Let's start using ParasoR and genome-wide RNA structure prediction on your own PC!


For any short sequence,

you can instantly try ParasoR analysis by command lines as below.

Direct input

ParasoR --pre -f UCCCG

Fasta file format

ParasoR --pre --input hoge.fasta

About parallel computation for long sequences, please refer ParasoR model.

For detailed analyses,

please refer Secondary structure prediction and Basic parameter setting.

##Change log:

  • 21.06.16 Calculation of too short sequences (shorter than the length of maximal span) was reported to be not finished in ParasoR mode v1.0.0 due to the file name inconsistency.[Fix]
  • 06.05.16 v1.0 Released.