NEWS.md

ViDGER 1.1.3

• Added grey.scale parameter to vsDEGMatrix() function.

• Added text size parameters for all functions. These parameters are as follows:

  • xaxis.text.size
  • yaxis.text.size
  • xaxis.title.size
  • yaxis.title.size
  • main.title.size
  • legend.text.size
  • legend.title.size
  • facet.title.size

  Each of these parameters controls font size in terms of typographic points.

ViDGER 1.1.2

• Added data.return parameters to all functions.

• Added new aesthetic design parameter (aes) for the vsBoxPlot() function:

  • box: standard box plot
  • violin: violin plot
  • boxdot: box plot with dot plot overlay
  • viodot: violin plot with dot plot overlay
  • viosumm: violin plot with summary stats overlay
  • notch: box plot with notch

• Added new fill color parameter (fill.color) for the vsBoxplot() function:

  • Based on palettes found in the RColorBrewer package.
  • A visual list of all the palettes can be found here.

ViDGER 1.1.0

• Added labelling parameters for user to highlight/label IDs of interest. This was added to the following functions:

  • vsScatterPlot()
  • vsMAPlot()
  • vsVolcano()
  • vsFourWay()

  This feature can be used by adding a vector of IDs found in their respective data class using the highlight parameter.

• Added data.return parameter to the vsScatterPlot() function.

ViDGER 1.0.0

• Added a NEWS.md file to track changes to the package.

• Added new logo to commemorate its acceptance into Bioconductor.

• Deployment of 9 functions:

  • vsScatterPlot()
  • vsScatterMatrix()
  • vsBoxplot()
  • vsDEGMatrix()
  • vsVolcano()
  • vsVolcanoMatrix()
  • vsMAPlot()
  • vsMAMatrix()
  • vsFourWay()