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Commit 8fdb615

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committedJan 28, 2025
Made paths more generic
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‎Islandviewer/settings/paths.py

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sys.path.insert(0, os.path.join(BASE_DIR, "lib"))
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if env.PROD_ENV:
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CUSTOM_GENOMES = "/data/transition/islandviewerV4/data/custom_genomes/"
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GENOME_UPLOAD_PATH = "/data/transition/islandviewerV4/data/custom_genomes/tmp/"
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GENOME_SUBMISSION_SCRIPT = "/data/transition/islandviewerV4/static/bin/submit_uploaded_genome.pl -c /data/transition/islandviewerV4/static/etc/islandviewer.config -f {filename} -n \"{genome_name}\" -l /data/transition/islandviewerV4/static/etc/logger.upload.conf 2>/dev/null"
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PIPELINE_PATH = "/data/transition/scheduler/metascheduler/static/etc/pipeline"
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ANALYSIS_PATH = "/data/transition/islandviewerV4/data/analysis"
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CUSTOM_GENOMES = "/mypath/islandviewerV4/data/custom_genomes/"
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GENOME_UPLOAD_PATH = "/mypath/islandviewerV4/data/custom_genomes/tmp/"
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GENOME_SUBMISSION_SCRIPT = "/mypath/islandviewerV4/static/bin/submit_uploaded_genome.pl -c /mypath/islandviewerV4/static/etc/islandviewer.config -f {filename} -n \"{genome_name}\" -l /mypath/islandviewerV4/static/etc/logger.upload.conf 2>/dev/null"
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PIPELINE_PATH = "/mypath/scheduler/metascheduler/static/etc/pipeline"
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ANALYSIS_PATH = "/mypath/islandviewerV4/data/analysis"

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