blank.yml

name: Generate webpage content

on:
  workflow_dispatch:
  push:
    branches: ["main"]
    paths:
      - '*.json'

# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
permissions:
  contents: write
  pages: write
  id-token: write

# Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued.
# However, do NOT cancel in-progress runs as we want to allow these production deployments to complete.
concurrency:
  group: "pages"
  cancel-in-progress: false

jobs:
  webpage:
    runs-on: ubuntu-latest
    outputs:
      modified: ${{ steps.commit.outputs.modified }}
    steps:
      - uses: actions/checkout@v4
        with:
          submodules: true
          fetch-depth: 0

      - name: Install groovy
        run: sudo apt install groovy

      - name: Generate website
        run: |
          groovy update.groovy > docs/gene_database/readme.md
          cp *.json docs/.
      - name: Generate BridgeDb Webservice config files
        run: |
          groovy makeGDBconfig.groovy

      - name: Commit report
        id: commit
        run: |
          git config --global user.name 'GitHub Action'
          git config --global user.email 'action@github.com'
          git add docs
          if git diff --exit-code --staged; then
              echo "No changes"
              echo "modified=" >> $GITHUB_OUTPUT
          else
              git commit -m 'Converted JSON content into markdown '
              git push
              echo "modified=$(git diff --name-only --diff-filter=AM ${{ github.event.before }} -- docs/*.json | xargs)" >> $GITHUB_OUTPUT
          fi

  # Build Jeckyll Website job
  build:
    runs-on: ubuntu-latest
    needs: webpage
    steps:
      - name: Checkout
        uses: actions/checkout@v4
        with:
          ref: main
      - name: Setup Pages
        uses: actions/configure-pages@v5
      - name: Build with Jekyll
        uses: actions/jekyll-build-pages@v1
        with:
          source: ./docs
          destination: ./_site
      - name: Upload artifact
        uses: actions/upload-pages-artifact@v3

  # Jeckyll Website Deployment job
  deploy:
    environment:
      name: github-pages
      url: ${{ steps.deployment.outputs.page_url }}
    runs-on: ubuntu-latest
    needs: build
    steps:
      - name: Deploy to GitHub Pages
        id: deployment
        uses: actions/deploy-pages@v2

  # Pinging jobs
  pingDocker:
    runs-on: ubuntu-latest
    needs: [webpage, deploy]
    if: ${{needs.webpage.outputs.modified}}
    steps:
      - name: Trigger docker release
        uses: peter-evans/repository-dispatch@v3
        with:
          token: ${{ secrets.pat_external_workflow }}
          repository: bridgedb/docker
          event-type: update-event

  pingWikiPathways:
    runs-on: ubuntu-latest
    needs: [webpage, deploy]
    if: ${{needs.webpage.outputs.modified}}
    steps:
      - name: Trigger WikiPathways BridgeDb Cache Reset
        uses: peter-evans/repository-dispatch@v3
        with:
          token: ${{ secrets.PAT_WORKFLOW_WIKIPATHWAYS_BRIDGEDB_CACHE }}
          repository: wikipathways/wikipathways-database
          event-type: bridgedb-data-update-event
          # see https://github.com/wikipathways/wikipathways-database/blob/main/.github/workflows/scheduled_bridge_cache.yml#L4-L5