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Detect 3' end of SSU #2

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brendanf opened this issue Jun 16, 2020 · 1 comment
Open

Detect 3' end of SSU #2

brendanf opened this issue Jun 16, 2020 · 1 comment

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@brendanf
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This would be helpful for studies using primers that include enough SSU to be useful.
@brendanf
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To detect SSU: There is not a lot of conserved short-range secondary structure at the 3' end of SSU. Either use a CM including all of V10 and the helix it sits on, or HMMs (the same ones used in ITSx?).

@brendanf brendanf changed the title Detect 5' end of SSU Detect 3' end of SSU Jun 16, 2020
@brendanf brendanf mentioned this issue Jun 16, 2020
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