.gitignore

# Ignored file types
.DS_Store
examples/*.mp4
tests/*.mp4

.pytest_cache
__pycache__
*.pyc
.ipynb_checkpoints
.pytest_cache/*
.pytest_cache/
__pycache__/**
__pycache__/
**/__pycache__
brainrender/atlas_specific/gene_expression/__pycache__
brainrender/atlas_specific/gene_expression/__pycache__/*
brainrender/atlas_specific/__pycache__

example_brainrender_shot*
brain_regions.html
workspace.py
workspace.ipynb
brexport.html
*.ckpt
*.vscode
*.json
*.xml
*.idea
*.pyc
*.vtk
*.nrrd
*.tdms
*.mp4


screenshots/*
atlas_images/*

# Output folder where screnshots etx. are saved
Output/Data/*
Output/Scenes/*
Output/Screenshots/*
Output/Videos/*
Data/ABA/*

# User folder where they can save stuff without it being tracked by git
User/*

# This folder is sometimes created when the incorrect paths are passed
mouse_connectivity

# Visual studio stuff
*/tempCodeRunnerFile.py
*/.ipynb_checkpoints
.ipynb_checkpoints
*/__pycache__
__pycache__
.DS_Store
Users/

# Test scripts and hidden files
workspace.py
workspace.ipynb
playground.py
secrets

# Custom config files
*.conf.custom

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
.hypothesis/
.pytest_cache/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
doc/build/

# pydocmd
_build/
mkdocs.yml

# PyBuilder
target/

# pyenv
.python-version

# celery beat schedule file
celerybeat-schedule

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/

.idea/

*.~lock.*