From 261cbbf81a68d88ea1993691ccf4c8064485673d Mon Sep 17 00:00:00 2001
From: Boxiang Liu <jollier.liu@gmail.com>
Date: Thu, 26 Apr 2018 16:35:07 -0700
Subject: [PATCH] modified:   utils/mysql/gwas2mysql.R

---
 utils/mysql/gwas2mysql.R | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/utils/mysql/gwas2mysql.R b/utils/mysql/gwas2mysql.R
index 53979c7..08e2661 100644
--- a/utils/mysql/gwas2mysql.R
+++ b/utils/mysql/gwas2mysql.R
@@ -17,7 +17,7 @@ read_gwas = function(gwas_fn){
 	message(command)
 
 	gwas=tryCatch({
-		fread(command)
+		fread(command,header=TRUE)
 		}, 
 		error = function(e) {NULL}
 		)
@@ -139,6 +139,7 @@ for (gwas_fn in gwas_fn_list){
 	index_table(table_name)
 }
 
+
 gwas_dir = '/mnt/data/shared/datasets/gwas/batch5/'
 gwas_fn_list = list.files(gwas_dir,pattern='txt.gz$')
 for (gwas_fn in gwas_fn_list){