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LocusCompare: Visualizing the colocalization of association summary statistics

Introduction

LocusCompare is a suite of tools and datasets to visualize the colocalization of summary statistics from pairs of association datasets (e.g. GWAS and eQTL). These tools and datasets include:

  • Colocalization statistics between more than 200 GWAS and 48 GTEx (version 7) tissues
  • Interactive LocusCompare plot to visualize a single locus
  • Bash script to download summary statistics of more than 200 GWAS

Documentations

For instructions please follow these links:

To download stand-alone version:

License

GPL v3 or later

Developers

  • Boxiang Liu (author, maintainer)
  • Mike Gloudemans (author, maintainer)
  • Abhiram Rao (author)
  • Stephen Montgomery (author)

Citation

If you use locuscompare, please cite the following paper: https://www.nature.com/articles/s41588-019-0404-0

Boxiang Liu, Michael J. Gloudemans, Abhiram S. Rao, Erik Ingelsson & Stephen B. Montgomery (2019) Abundant associations with gene expression complicate GWAS follow-up, Nature Genetics