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DESCRIPTION
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DESCRIPTION
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Package: admixr
Title: An Interface for Running 'ADMIXTOOLS' Analyses
Version: 0.9.1.9000
Authors@R:
person(given = "Martin",
family = "Petr",
role = c("aut", "cre"),
email = "[email protected]",
comment = c(ORCID = "0000-0003-4879-8421"))
Description: An interface for performing all stages of 'ADMIXTOOLS' analyses
(<https://reich.hms.harvard.edu/software>) entirely from R. Wrapper functions
(D, f4, f3, etc.) completely automate the generation of intermediate
configuration files, run 'ADMIXTOOLS' programs on the command-line, and
parse output files to extract values of interest. This allows users to focus
on the analysis itself instead of worrying about low-level technical details.
A set of complementary functions for processing and filtering of data in
the 'EIGENSTRAT' format is also provided.
License: MIT + file LICENSE
URL: https://github.com/bodkan/admixr
BugReports: https://github.com/bodkan/admixr/issues
Depends:
R (>= 3.6.0)
Imports:
dplyr,
magrittr,
readr,
stringr,
tibble,
stats,
rlang,
utils
Suggests:
glue,
ggplot2,
testthat,
forcats,
tidyr,
knitr,
rmarkdown
SystemRequirements: ADMIXTOOLS suite of command-line utilities for population genetics. See <https://reich.hms.harvard.edu/software> for the most recent installation instructions and further information.
Encoding: UTF-8
RoxygenNote: 7.3.1
VignetteBuilder: knitr