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RC7 #371

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9 of 47 tasks
kellrott opened this issue Dec 21, 2022 · 0 comments
Open
9 of 47 tasks

RC7 #371

kellrott opened this issue Dec 21, 2022 · 0 comments

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@kellrott
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kellrott commented Dec 21, 2022 •
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  • allele
    • Need CCLE alleles
    • Need G2P alleles
  • celllines
  • ctrp
  • ensembl
  • gdsc
  • mc3
    • DELETE (replaced with GDC MAF files)
  • normalize (deleted)
  • pharmacodb
  • publication
    • Review and DELETE
  • callsetSummary
  • chembl
  • dgidb
  • g2p
    • Plans for updates
  • go
    • Needs review
  • mondo
  • pathway_commons
  • phenotype
    • Old merger step, review for deletion
  • pubmed
  • ccle
    • review for deletion (replaced with depmap?)
  • compound
    • Delete and replace with chembl transform?
  • gdc
    • Review
    • Compound information/linkage
  • gtex
    • Case converter
    • Sample converter
    • Gene level TPM
    • Transcript level TPM
  • msigdb
  • pfam
    • Review for deletion and replace with interpro transform
  • prism
    • Write download script
    • Write level one transform
    • Write level two transform
    • Link to Depmap cellline data
  • tcga
    • DELETE
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@kellrott