:wrech: make text exportable as entire strings not characters

Author: enryH

1_1_matplotlib.ipynb

@@ -24,7 +24,10 @@
     "import matplotlib as mpl\n",
     "import matplotlib.pyplot as plt\n",
     "import numpy as np\n",
-    "import pandas as pd"
+    "import pandas as pd\n",
+    "\n",
+    "mpl.rcParams['pdf.fonttype'] = 42\n",
+    "mpl.rcParams['ps.fonttype'] = 42"
    ]
   },
   {

1_1_matplotlib.py

@@ -13,6 +13,9 @@
 import numpy as np
 import pandas as pd
 
+mpl.rcParams['pdf.fonttype'] = 42
+mpl.rcParams['ps.fonttype'] = 42
+
 # %% [markdown]
 # ## Basic Line Plot
 # From Getting Started.

1_2_seaborn.ipynb

@@ -23,11 +23,15 @@
     "import os\n",
     "import pathlib\n",
     "\n",
+    "import matplotlib as mpl\n",
     "import matplotlib.pyplot as plt\n",
     "import pandas as pd\n",
     "import seaborn as sns\n",
     "\n",
-    "IN_COLAB = \"COLAB_GPU\" in os.environ"
+    "IN_COLAB = \"COLAB_GPU\" in os.environ\n",
+    "\n",
+    "mpl.rcParams['pdf.fonttype'] = 42\n",
+    "mpl.rcParams['ps.fonttype'] = 42"
    ]
   },
   {
@@ -141,6 +145,9 @@
    "cell_metadata_filter": "-all",
    "main_language": "python",
    "notebook_metadata_filter": "-all"
+  },
+  "language_info": {
+   "name": "python"
   }
  },
  "nbformat": 4,

1_2_seaborn.py

@@ -10,12 +10,16 @@
 import os
 import pathlib
 
+import matplotlib as mpl
 import matplotlib.pyplot as plt
 import pandas as pd
 import seaborn as sns
 
 IN_COLAB = "COLAB_GPU" in os.environ
 
+mpl.rcParams['pdf.fonttype'] = 42
+mpl.rcParams['ps.fonttype'] = 42
+
 # %% [markdown]
 # ## Proteomics data example
 

1_3_seaborn.ipynb

@@ -24,7 +24,7 @@
    "metadata": {},
    "source": [
     "Uses the data from [PXD04621](data/README.md) - using simulated data which looks\n",
-    "similar to the original data \n",
+    "similar to the original data\n",
     "([Marshall et. al. 2023)](https://www.sciencedirect.com/science/article/pii/S1756464623002451)).\n",
     "![figure_2](https://ars.els-cdn.com/content/image/1-s2.0-S1756464623002451-gr2.jpg)"
    ]
@@ -60,6 +60,7 @@
     "import os\n",
     "from pathlib import Path\n",
     "\n",
+    "import matplotlib as mpl\n",
     "import matplotlib.lines as mlines\n",
     "import matplotlib.pyplot as plt\n",
     "import numpy as np\n",
@@ -68,6 +69,9 @@
     "from matplotlib.ticker import MultipleLocator\n",
     "from sklearn.metrics import auc\n",
     "\n",
+    "mpl.rcParams[\"pdf.fonttype\"] = 42\n",
+    "mpl.rcParams[\"ps.fonttype\"] = 42\n",
+    "\n",
     "IN_COLAB = \"COLAB_GPU\" in os.environ"
    ]
   },

1_3_seaborn.py

@@ -24,7 +24,7 @@
 
 # %% [markdown]
 # Uses the data from [PXD04621](data/README.md) - using simulated data which looks
-# similar to the original data 
+# similar to the original data
 # ([Marshall et. al. 2023)](https://www.sciencedirect.com/science/article/pii/S1756464623002451)).
 # ![figure_2](https://ars.els-cdn.com/content/image/1-s2.0-S1756464623002451-gr2.jpg)
 
@@ -42,6 +42,7 @@
 import os
 from pathlib import Path
 
+import matplotlib as mpl
 import matplotlib.lines as mlines
 import matplotlib.pyplot as plt
 import numpy as np
@@ -50,6 +51,9 @@
 from matplotlib.ticker import MultipleLocator
 from sklearn.metrics import auc
 
+mpl.rcParams["pdf.fonttype"] = 42
+mpl.rcParams["ps.fonttype"] = 42
+
 IN_COLAB = "COLAB_GPU" in os.environ
 
 # %%

exercises/CRISPRi/figure_2.ipynb

@@ -24,11 +24,15 @@
    "source": [
     "import os\n",
     "\n",
+    "import matplotlib as mpl\n",
     "import matplotlib.pyplot as plt\n",
     "import numpy as np\n",
     "import pandas as pd\n",
     "import seaborn as sns\n",
     "\n",
+    "mpl.rcParams['pdf.fonttype'] = 42\n",
+    "mpl.rcParams['ps.fonttype'] = 42\n",
+    "\n",
     "IN_COLAB = \"COLAB_GPU\" in os.environ"
    ]
   },

exercises/CRISPRi/figure_2.py

@@ -5,7 +5,7 @@
 #       extension: .py
 #       format_name: percent
 #       format_version: '1.3'
-#       jupytext_version: 1.17.2
+#       jupytext_version: 1.18.1
 #   kernelspec:
 #     display_name: Python 3
 #     language: python
@@ -25,11 +25,15 @@
 # %%
 import os
 
+import matplotlib as mpl
 import matplotlib.pyplot as plt
 import numpy as np
 import pandas as pd
 import seaborn as sns
 
+mpl.rcParams['pdf.fonttype'] = 42
+mpl.rcParams['ps.fonttype'] = 42
+
 IN_COLAB = "COLAB_GPU" in os.environ