Issue activating Conda Environment #329
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Never mind, I was following along in the PDF version of the Handbook which does not have the note about Conda vs Mamba vs micromamba in the online version of the handbook! When I use micromamba this fixed the issue. |
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Hello! I just started reading through the BioStars Handbook and tried to run the quick install curl command:
curl http://data.biostarhandbook.com/install.sh | bash
When I try to activate the bioinformatics environment, I encountered this error:
EnvironmentNameNotFound: Could not find conda environment: bioinfo
I think I'm getting this error because I already installed a few Conda environments for a previous workshop on my laptop. When I run the command "conda info --envs" in the terminal, I see the bioinfo environment exists, but I'm not sure how to access it:
conda environments:
base * /Users/danielyen/miniconda
kb /Users/danielyen/miniconda/envs/kb
rnaseq /Users/danielyen/miniconda/envs/rnaseq
sourmash /Users/danielyen/miniconda/envs/sourmash
Thanks in advance for the help!
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