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Record values of other observables #5
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Assignment rules can now be tracked. See PySCeS/pysces#57 (comment). Fixed in latest PySCeS Release (1.0.2). |
This continues the discussion from here where certain model outputs are not recorded. The unrecorded variables are all assignment rules. In fact they are recorded by PySCeS, so it is a wrapper issue. Staying with Biomodels 297. I've had a brief look at the wrapper code. The wrapper records the simulation results here:
@luciansmith I have verified that this array contains all the simulation data including the assignment rules, in fact it is the same data as in the It therefore has to do with filtering of the model attributes which as far as I can see happens here: Biosimulators_PySCeS/biosimulators_pysces/core.py Lines 309 to 310 in 2d97929
The rules are not part The assignment and rate rules are in a dictionary
Hopefully this will give you sufficient info to track this down further. Unfortunately I don't have time in the coming weeks to work on this myself. |
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