{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":307498510,"defaultBranch":"dev","name":"Biosimulators_AMICI","ownerLogin":"biosimulators","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-10-26T20:39:20.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/70395832?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1687990123.0","currentOid":""},"activityList":{"items":[{"before":"bf0dcb25201332e1f4a32d24873149c3800a2a4f","after":"58d8528c50b461dd36ab55fd53e1f3c122053460","ref":"refs/heads/dev","pushedAt":"2024-04-22T09:39:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Updating version of simulator","shortMessageHtmlLink":"Updating version of simulator"}},{"before":"97c59f49828402f285896601d8df6f14de196534","after":"bf0dcb25201332e1f4a32d24873149c3800a2a4f","ref":"refs/heads/dev","pushedAt":"2024-03-11T15:47:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Updating version of simulator","shortMessageHtmlLink":"Updating version of simulator"}},{"before":"6c3a77cd795e0873f5c8b8d5366bb87a02491a78","after":"97c59f49828402f285896601d8df6f14de196534","ref":"refs/heads/dev","pushedAt":"2024-03-07T23:11:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Updating version of simulator","shortMessageHtmlLink":"Updating version of simulator"}},{"before":"407baaab3770e140524b99139d8da14303e4bd8c","after":"6c3a77cd795e0873f5c8b8d5366bb87a02491a78","ref":"refs/heads/dev","pushedAt":"2024-02-26T11:39:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Updating version of simulator","shortMessageHtmlLink":"Updating version of simulator"}},{"before":"fd3b7f6dd8ad175aa9cf70bbf83f7788c472c0d9","after":"407baaab3770e140524b99139d8da14303e4bd8c","ref":"refs/heads/dev","pushedAt":"2023-11-21T19:21:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Updating version of simulator","shortMessageHtmlLink":"Updating version of simulator"}},{"before":"b8572fe25915434a4282b0cca73ae033415b7e6a","after":"fd3b7f6dd8ad175aa9cf70bbf83f7788c472c0d9","ref":"refs/heads/dev","pushedAt":"2023-08-26T06:32:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Updating version of simulator","shortMessageHtmlLink":"Updating version of simulator"}},{"before":"df24b7be16286f3382792f60d6a3dfe18388a82f","after":"b8572fe25915434a4282b0cca73ae033415b7e6a","ref":"refs/heads/dev","pushedAt":"2023-06-28T22:22:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Updating compiled documentation","shortMessageHtmlLink":"Updating compiled documentation"}},{"before":"669222b11df36efb2fb35c60896984cc18bac587","after":"df24b7be16286f3382792f60d6a3dfe18388a82f","ref":"refs/heads/dev","pushedAt":"2023-06-28T21:29:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"},"commit":{"message":"Update to latest libkisao.","shortMessageHtmlLink":"Update to latest libkisao."}},{"before":"d594bd84f38b7e515c204aefb934129a25b3f614","after":"669222b11df36efb2fb35c60896984cc18bac587","ref":"refs/heads/dev","pushedAt":"2023-06-26T18:13:25.830Z","pushType":"push","commitsCount":2,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"},"commit":{"message":"Merge branch 'dev' of https://github.com/biosimulators/Biosimulators_AMICI into dev","shortMessageHtmlLink":"Merge branch 'dev' of https://github.com/biosimulators/Biosimulators_…"}},{"before":"62b4cd4eb04e95a84e4ff9be05a539b4725af2d5","after":null,"ref":"refs/tags/0.1.23","pushedAt":"2023-06-26T18:13:09.965Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"}},{"before":"62b4cd4eb04e95a84e4ff9be05a539b4725af2d5","after":"d594bd84f38b7e515c204aefb934129a25b3f614","ref":"refs/heads/dev","pushedAt":"2023-06-26T18:10:35.752Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Updating compiled documentation","shortMessageHtmlLink":"Updating compiled documentation"}},{"before":"3d6f560f040228f8ba1852009126240aed2c8096","after":"62b4cd4eb04e95a84e4ff9be05a539b4725af2d5","ref":"refs/heads/dev","pushedAt":"2023-06-26T17:58:55.763Z","pushType":"push","commitsCount":1,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"},"commit":{"message":"Fix GITHUB_OUTPUT lines.","shortMessageHtmlLink":"Fix GITHUB_OUTPUT lines."}},{"before":"3d6f560f040228f8ba1852009126240aed2c8096","after":null,"ref":"refs/tags/0.1.23","pushedAt":"2023-06-26T17:58:28.719Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"}},{"before":"91272b520015352831b1adf6b6961a0e856ad466","after":null,"ref":"refs/tags/0.1.23","pushedAt":"2023-06-26T17:29:21.641Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"}},{"before":"11a933e9aea3df35b2c3427e570af5788f724915","after":"3d6f560f040228f8ba1852009126240aed2c8096","ref":"refs/heads/dev","pushedAt":"2023-06-26T17:28:43.289Z","pushType":"push","commitsCount":1,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"},"commit":{"message":"Try to figure out why release wasn't triggered.","shortMessageHtmlLink":"Try to figure out why release wasn't triggered."}},{"before":"91272b520015352831b1adf6b6961a0e856ad466","after":"11a933e9aea3df35b2c3427e570af5788f724915","ref":"refs/heads/dev","pushedAt":"2023-06-26T10:59:06.602Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Updating version of simulator","shortMessageHtmlLink":"Updating version of simulator"}},{"before":"d241e34d803b239a613f156db389c3ab84e29a2c","after":null,"ref":"refs/heads/fix_observable_ids","pushedAt":"2023-06-25T05:20:02.861Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"}},{"before":"aff6b4b8cf6b561594260602b8621d9681f467e0","after":null,"ref":"refs/heads/update-docker","pushedAt":"2023-06-25T05:18:54.773Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"}},{"before":"a763fa62847713f8f9d8b4a6e4490a63d587b288","after":"91272b520015352831b1adf6b6961a0e856ad466","ref":"refs/heads/dev","pushedAt":"2023-06-25T05:18:50.254Z","pushType":"pr_merge","commitsCount":14,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"},"commit":{"message":"Merge pull request #10 from biosimulators/update-docker\n\nFix CI","shortMessageHtmlLink":"Merge pull request #10 from biosimulators/update-docker"}},{"before":"d761f42b3b40388249e1f3fe1fbf984ece673ff6","after":"aff6b4b8cf6b561594260602b8621d9681f467e0","ref":"refs/heads/update-docker","pushedAt":"2023-06-24T23:00:12.259Z","pushType":"push","commitsCount":1,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"},"commit":{"message":"Remove sphinxprettysearchresults\n\nIt broke, and isn't being updated.","shortMessageHtmlLink":"Remove sphinxprettysearchresults"}},{"before":"ed7644f7e6eb82dd4dc6617ca1b4e92418041dc1","after":"d761f42b3b40388249e1f3fe1fbf984ece673ff6","ref":"refs/heads/update-docker","pushedAt":"2023-06-24T20:35:47.912Z","pushType":"push","commitsCount":1,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"},"commit":{"message":"Relax tolerance\n\n(Might have the argument names wrong)","shortMessageHtmlLink":"Relax tolerance"}},{"before":"0d160c56aae178464748f3bcf68fcaed6840b3e9","after":"ed7644f7e6eb82dd4dc6617ca1b4e92418041dc1","ref":"refs/heads/update-docker","pushedAt":"2023-06-24T19:54:41.650Z","pushType":"push","commitsCount":1,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"},"commit":{"message":"Set actual value, not 'none'.","shortMessageHtmlLink":"Set actual value, not 'none'."}},{"before":"2c09e28f9631df34dbbc6e2f5c6abbef98cd2c20","after":"0d160c56aae178464748f3bcf68fcaed6840b3e9","ref":"refs/heads/update-docker","pushedAt":"2023-06-24T19:28:55.836Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"},"commit":{"message":"Merge pull request #9 from biosimulators/fix_observable_ids\n\nFix observable IDs","shortMessageHtmlLink":"Merge pull request #9 from biosimulators/fix_observable_ids"}},{"before":null,"after":"d241e34d803b239a613f156db389c3ab84e29a2c","ref":"refs/heads/fix_observable_ids","pushedAt":"2023-06-24T06:53:32.647Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dweindl","name":"Daniel Weindl","path":"/dweindl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/18048784?s=80&v=4"},"commit":{"message":"Fix observable IDs\n\nIDs in AMICI models have to be globally unique.\n\nFixes errors of type `E amici.import_utils.SBMLException: AMICI tried to add a local symbol AL with value AL, but AL was already instantiated with AL. This means that there are multiple SBML elements with SId AL, which is invalid SBML. This can be fixed by renaming the elements with SId AL.`","shortMessageHtmlLink":"Fix observable IDs"}},{"before":"7d407fdc575aefdc15c3b3f015d132d4be3f6c6e","after":"2c09e28f9631df34dbbc6e2f5c6abbef98cd2c20","ref":"refs/heads/update-docker","pushedAt":"2023-06-23T22:50:44.738Z","pushType":"push","commitsCount":1,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"},"commit":{"message":"Fix comment.","shortMessageHtmlLink":"Fix comment."}},{"before":"55406a5258ed6d7a9d9c3e8708756d7f5b190ab9","after":"7d407fdc575aefdc15c3b3f015d132d4be3f6c6e","ref":"refs/heads/update-docker","pushedAt":"2023-06-23T22:45:24.086Z","pushType":"push","commitsCount":1,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"},"commit":{"message":"Try not explicitly installing amici\n\nExplicitly installing it seems to have problems with sympy, even if sympy is clearly already installed. However, amici is a dependency of biosimulators_amici, so it should be installed already anyway? Let's see what happens.","shortMessageHtmlLink":"Try not explicitly installing amici"}},{"before":"3e0e2d950d1d31744463b1210edfdef262e62636","after":"55406a5258ed6d7a9d9c3e8708756d7f5b190ab9","ref":"refs/heads/update-docker","pushedAt":"2023-06-23T22:33:24.999Z","pushType":"push","commitsCount":1,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"},"commit":{"message":"Explicitly install sympy.","shortMessageHtmlLink":"Explicitly install sympy."}},{"before":"3e7ce576915e322fcabf4ab54fd9bcf18511dbb5","after":"3e0e2d950d1d31744463b1210edfdef262e62636","ref":"refs/heads/update-docker","pushedAt":"2023-06-23T22:23:03.811Z","pushType":"push","commitsCount":1,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"},"commit":{"message":"Amici should have already been installed?\n\nInstall it explicitly, but it shouldn't make a difference.","shortMessageHtmlLink":"Amici should have already been installed?"}},{"before":"becea9807f401e7005f9afbe2db88f18399419ac","after":"3e7ce576915e322fcabf4ab54fd9bcf18511dbb5","ref":"refs/heads/update-docker","pushedAt":"2023-06-23T22:11:54.010Z","pushType":"push","commitsCount":1,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"},"commit":{"message":"Try pinning pip to 23.0.1\n\nAs of 23.1, pip updated to no longer allow how all biosimulations projects are installed.","shortMessageHtmlLink":"Try pinning pip to 23.0.1"}},{"before":"11c4d2eaf401c8b0850d2cb52fec3e9ef2d0b657","after":"becea9807f401e7005f9afbe2db88f18399419ac","ref":"refs/heads/update-docker","pushedAt":"2023-06-23T21:55:53.431Z","pushType":"push","commitsCount":1,"pusher":{"login":"luciansmith","name":"Lucian Smith","path":"/luciansmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1736150?s=80&v=4"},"commit":{"message":"Install sympy by hand.\n\nIt should be a requirement of amici, but perhaps it was missed?","shortMessageHtmlLink":"Install sympy by hand."}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAENtSWPwA","startCursor":null,"endCursor":null}},"title":"Activity · biosimulators/Biosimulators_AMICI"}