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update links to Tutorial pages
fix a link to bioperl howtos
Updated Resources (markdown)
dev.bioruby.org does not exist. Replace those links to web.archive.org
Remove thumbnail that was failed to be converted from MediaWiki to Markdown.
remove initial Home.md and move Main_Page.md to Home.md
import images used in wiki pages from bioruby.open-bio.org/wiki
import pages from bioruby.open-bio.org/wiki/
Initial Home page