GitHub - bioinform/varsim: VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications

27 Branches 37 Tags

Name	Name	Last commit message	Last commit date
Latest commit yunfeiguo Merge pull request #266 from bioinform/fix_build Jan 28, 2022 aa1b70d · Jan 28, 2022 History 1,428 Commits
.github	.github	add template for pull request.	Nov 3, 2016
docker	docker	update	Sep 20, 2021
rtg-tools @ bdba5ea	rtg-tools @ bdba5ea	Revert "Revert "improve variant evaluation""	Mar 28, 2018
src	src	treat insertions as SVs regardless of length when -ignore_ins_len used	Oct 19, 2021
tests	tests	let test fail fast	Sep 17, 2021
web_assets/img	web_assets/img	add illustration	Sep 4, 2019
webapp	webapp	display identity threshold in webapp	Jan 27, 2017
.gitignore	.gitignore	Revert "Revert "improve variant evaluation""	Mar 28, 2018
.gitmodules	.gitmodules	Revert "Revert "improve variant evaluation""	Mar 28, 2018
COPYRIGHT.txt	COPYRIGHT.txt	add copyright	Nov 25, 2014
LICENSE.txt	LICENSE.txt	Update license to BSD	Nov 25, 2014
README.md	README.md	test git	Sep 20, 2016
__init__.py	__init__.py	Make .py script also usable as a package	May 5, 2017
build.sh	build.sh	fix certificate issue for wget	Jan 28, 2022
build_release.sh	build_release.sh	fix version number issue	Sep 26, 2020
combine_vcf.py	combine_vcf.py	rm intermediary files	Jun 8, 2021
compare_vcf.py	compare_vcf.py	ignore missing or incompatible SVLEN when using -ignore_ins_len (for …	Oct 19, 2021
flip_map.py	flip_map.py	fix	Sep 7, 2021
formats.md	formats.md	null change	Jan 13, 2015
generate_small_test_ref.py	generate_small_test_ref.py	Merge remote-tracking branch 'origin/fix_CN_incompatibility' into mor…	Oct 1, 2019
liftover_restricted_vcf_map.py	liftover_restricted_vcf_map.py	fix for contigs containing underscore	Feb 3, 2020
pom.xml	pom.xml	Merge branch 'master' into dependabot/maven/junit-junit-4.13.1	Oct 15, 2020
technotes.md	technotes.md	add illustration	Sep 4, 2019
utils.py	utils.py	rm intermediary files	Jun 8, 2021
varsim.py	varsim.py	fix command interpolation	Sep 26, 2020
varsim_multi.py	varsim_multi.py	add sample ID option for DGV and VCF sampler	Sep 26, 2020
varsim_somatic.py	varsim_somatic.py	use default python	Aug 4, 2019
varsim_validator.py	varsim_validator.py	enable specification of java; utilize default java when available	Aug 2, 2019

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VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications

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