zfish9.html

---
layout: genome
---
    <script language="javascript">

  new Browser({
      chr:        '1',
      viewStart:  30000000,
      viewEnd:    30030000,
      cookieKey:  'danio-zv9',

      coordSystem: {
          speciesName: 'Danio rerio',
          taxon: 7955,
          auth: 'Zv',
          version: 9
      },
/*
    chains: {
      mm8ToMm9: new Chainset('http://www.derkholm.net:8080/das/mm8ToMm9/', 'NCBIM36', 'NCBIM37',
                               {
                                  speciesName: 'Mouse',
                                  taxon: 10090,
                                  auth: 'NCBIM',
                                  version: 36
                               })
    }, */


      sources:      [{name: 'Genome',
                     uri:  'http://www.derkholm.net:9080/das/danRer7comp/',
                     desc: 'Zebrafish reference genome build Zv9', 
                     tier_type: 'sequence',
                     provides_entrypoints: true},
                    {name: 'Genes',
                     desc: 'Gene structures from Ensembl 61',
                     uri:  'http://www.derkholm.net:8080/das/dre_61_9a/',
                     collapseSuperGroups: true,
                     provides_karyotype: true,
                     provides_search: true},
                    {name: 'Repeats',
                     desc: 'Repeat annotation from Ensembl 61',
                     uri:  'http://www.derkholm.net:8080/das/dre_61_9a/',
                     stylesheet_uri: 'http://www.derkholm.net/dalliance-test/stylesheets/ens-repeats.xml'}],

 
    searchEndpoint: new DASSource('http://www.derkholm.net:8080/das/dre_61_9a/'),
    karyoEndpoint: new DASSource('http://www.derkholm.net:8080/das/dre_61_9a/'),
 
        uiPrefix: '{{site.uiprefix}}/',
 
    browserLinks: {
        Ensembl: 'http://www.ensembl.org/Danio_rerio/Location/View?r=${chr}:${start}-${end}',
        UCSC: 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=chr${chr}:${start}-${end}'
    }
});

	  </script>



      <div id='svgHolder'>Dalliance goes here...</div>