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human38.html
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---
layout: genome
---
<script language="javascript">
var b = new Browser({
chr: '22',
viewStart: 30300000,
viewEnd: 30500000,
cookieKey: 'human-grc_h38',
coordSystem: {
speciesName: 'Human',
taxon: 9606,
auth: 'GRCh',
version: '38',
ucscName: 'hg38'
},
chains: {
hg19ToHg38: {
uri: '//www.biodalliance.org/datasets/hg19ToHg38.bb',
type: 'bigbed',
coords: {
speciesName: 'Human',
taxon: 9606,
auth: 'GRCh',
version: 37,
ucscName: 'hg19'
}
}
},
sources: [{name: 'Genome',
twoBitURI: '//www.biodalliance.org/datasets/hg38.2bit',
tier_type: 'sequence'}
,{name: 'GENCODE',
desc: 'Gene structures from GENCODE 21',
bwgURI: '//www.biodalliance.org/datasets/GRCh38/gencode.v21.annotation.bb',
stylesheet_uri: '//www.biodalliance.org/stylesheets/gencode2.xml',
collapseSuperGroups: true,
trixURI: '//www.biodalliance.org/datasets/GRCh38/gencode.v21.annotation.ix'}
,{name: 'GENCODEv19',
disabled: true,
desc: 'Gene structures from GENCODE 19',
bwgURI: '//www.biodalliance.org/datasets/gencode.bb',
stylesheet_uri: '//www.biodalliance.org/stylesheets/gencode.xml',
collapseSuperGroups: true,
pennant: '//genome.ucsc.edu/images/19.jpg',
trixURI: '//www.biodalliance.org/datasets/gene-index.ix',
mapping: 'hg19ToHg38'}
,{name: 'Repeats',
desc: 'Repeat annotation from UCSC',
bwgURI: '//www.biodalliance.org/datasets/GRCh38/repeats.bb',
stylesheet_uri: '//www.biodalliance.org/stylesheets/bb-repeats2.xml'}
],
prefix: '{{site.uiprefix}}/',
fullScreen: true,
hubs: ['http://ngs.sanger.ac.uk/production/ensembl/regulation/hub.txt', {url: 'http://ftp.ebi.ac.uk/pub/databases/ensembl/encode/integration_data_jan2011/hub.txt', genome: 'hg19', mapping: 'hg19ToHg38'}],
});
</script>
<div id='svgHolder'>Dalliance goes here...</div>