human36.html

---
layout: genome
---
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    chr:          '22',
    viewStart:    30000000,
    viewEnd:      30030000,
    cookieKey:    'ndw-human-ncbi36',

    coordSystem: {
      speciesName: 'Human',
      taxon: 9606,
      auth: 'NCBI',
      version: '36',
      ucscName: 'hg18'
    },

    chains: {
      hg19ToHg18: new Chainset('http://www.derkholm.net:8080/das/hg19ToHg18/', 'GRCh37', 'NCBI36',
                               {
                                  speciesName: 'Human',
                                  taxon: 9606,
                                  auth: 'GRCh',
                                  version: 37
                               })
    },

    sources:     [{name:                 'Genome',      
                   twoBitURI:            'http://www.biodalliance.org/datasets/hg18.2bit',
                   tier_type:            'sequence'},
                  {name:                 'Genes',     
                   desc:                 'Gene structures from Ensembl 54',
                   uri:                  'http://www.derkholm.net:8080/das/hsa_54_36p/',      
                   collapseSuperGroups:  true,
                   provides_karyotype:   true,
                   provides_search:      true,
                   provides_entrypoints: true,
                   maxbins:              false}, 
                  {name:                 'Repeats',     
                   uri:                  'http://www.derkholm.net:8080/das/hsa_54_36p/',      
                   stylesheet_uri:       'http://www.biodalliance.org/stylesheets/repeats-L1.xml'}, 
                  {name:                 'CpG Density', 
                   uri:                  'http://www.derkholm.net:8080/das/hg18comp/',        
                   // stylesheet_uri:       'http://www.biodalliance.org/stylesheets/cpg-hist.xml',
                   style:                [{type: 'cpgoe',
                                           style: {glyph: 'LINEPLOT',
                                                   FGCOLOR: 'green', HEIGHT: '50'}}]},
                    {name: 'MeDIP-raw',
                     desc: 'MeDIP-seq reads from Nature Biotech. 26:779-785',
                     uri: 'http://www.derkholm.net:8080/das/medipseq_reads/'},
                  {name:                 'BWG test',
                   bwgURI:               'http://www.biodalliance.org/datasets/spermMethylation.bw',
                   stylesheet_uri:       'http://www.ebi.ac.uk/das-srv/genomicdas/das/batman_seq_SP/stylesheet'},
                  {name:                 'BBD test',
                   bwgURI:               'http://www.biodalliance.org/datasets/ensGene.bb',
                   link:                 'http://ncbi36.ensembl.org/Homo_sapiens/Gene/Summary?t=$$',
                   collapseSuperGroups:  true,
                   disable: true}
                ],

    setDocumentTitle: true,

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    searchEndpoint: new DASSource('http://www.derkholm.net:8080/das/hsa_54_36p/'),
    browserLinks: {
        Ensembl: 'http://ncbi36.ensembl.org/Homo_sapiens/Location/View?r=${chr}:${start}-${end}',
        UCSC: 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg18&position=chr${chr}:${start}-${end}',
        Sequence: 'http://www.derkholm.net:8080/das/hg18comp/sequence?segment=${chr}:${start},${end}'
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      <div id='svgHolder'>Dalliance goes here...</div>