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How to run this pipeline? #2

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BenAawf opened this issue Oct 3, 2023 · 2 comments

BenAawf commented Oct 3, 2023

Hi first of all this might be a very alphabetic question but I could not find any manual on how to run this pipeline.

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lucacozzuto commented Oct 5, 2023

Hi, I will add some more text to the README.

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lucacozzuto commented Oct 5, 2023

This is a "old" nextflow pipeline so you need to run a specific version like:

NXF_VER=0.29.0 nextflow run denovo_assembly.nf -bg > log.txt

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