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pipelines.html
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<!DOCTYPE html>
<html>
<head>
<title>CRG Bioinformatics core facility</title>
<!-- link to main stylesheet -->
<link rel="stylesheet" type="text/css" href="/css/main.css">
</head>
<body>
<nav>
<ul>
<li><a href="https://biocorecrg.github.io/"><img src="https://biocore.crg.eu/images/biocore-logo.png" alt="biocore logo" style="height:64px;"></a></li>
<li><a href="https://www.crg.eu/"><img src="https://biysc.org/sites/default/files/biysc_crg_logo.jpg.png" alt="CRG logo" style="height:60px;"</a></li>
<li><a href="/">Home</a></li>
<li><a href="/courses">Courses</a></li>
<li><a href="/pipelines">Pipelines</a></li>
<li><a href="/about">About us</a></li>
</ul>
</nav>
<div class="container">
<div class="blurb">
<h1>Pipelines</h1>
</div><!-- /.blurb -->
</div><!-- /.container -->
We build pipelines using Linux Containers (Docker / Singularity) and NextFlow:
<li><a href="https://github.com/biocorecrg/MOP2">Master of Pores 2</a>. Nextflow DSL2 pipelinbe for the analysis of Nanopore data</li>
<li><a href="https://github.com/biocorecrg/master_of_pores">Master of Pores</a>. Nextflow pipeline for analysis of direct RNA Nanopore reads</li>
<li><a href="https://github.com/biocorecrg/indrop">InDrop</a>. Single cell transcriptome analysis pipeline based on DropEst</li>
<footer>
<ul>
<li><a href="mailto:[email protected]">email</a></li>
<li><a href="https://biocore.crg.eu/">our wiki page</a></li>
<li><a href="https://github.com/biocorecrg">github.com/biocorecrg</a></li>
<li><a href="https://twitter.com/biocorecrg">twitter</a></li>
</ul>
</footer>
</body>
</html>