CHANGELOG.txt

# 17.06.21 (0.0.52)
- fix version string in setup.py

# 14.05.21 (0.0.50)
- fix outdated API-calls to pyranges

# 14.05.21 (0.0.49)
- add missing guess-bampe-flag to epic2-bw

# 25.10.20 (0.0.48)
- fix bugs in epic2-df

# 12.10.20 (0.0.47)
- add missing .cpp file

# 25.09.20 (0.0.46)
- make dist tar not linux egg on PyPI

# 01.09.20 (0.0.45)
- optional bampe format support with the --guess-bampe flag(issue 24)

# 18.08.20 (0.0.44)
- attempt fix 36

# 14.08.20 (0.0.43)
- hotfix 0.0.42

# 14.08.20 (0.0.42)
- better error message for bug in issue 36

# 10.09.19 (0.0.41)
- print warning if chromosome not in chromsizes
- fix bug in epic2-df if chromosomes were gencode-style and data too large

# 29.08.19 (0.0.40)
- make easier to install and compile

# 21.08.19 (0.0.38-39)
- fix error compilation macOS

# 14.08.19 (0.0.37)
- improve logging
- accept bedpe where leftmost mate is in rightmost block

# 05.06.19 (0.0.36)
- epic2-bw beta

# 03.06.19 (0.0.35)
- epic2-df bugfix

# 27.05.19 (0.0.34)
- fix missing flag in epic2-df

# 26.04.19 (0.0.33)
- use new way to compute statistics which works on large datasets (previous way available as --original-statistics)

# 22.04.19 (0.0.30-32)
- update pyranges requirements to 0.0.27
- various epic2-df import weirdness fixed

# 12.04.19 (0.0.29)
- fix potential importerrors in epic2-df

# 12.04.19 (0.0.28)
- add --experimental-statistics flag to epic2-df also

# 12.04.19 (0.0.27)
- changelog introduced!
- add flag --experimental-statistics that avoids a bug in the original SICER algorithm on large datasets.