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Score & Fold_change? What do they mean and how to caculate them? #56

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zhenyisong opened this issue Jun 9, 2017 · 1 comment
Open

Score & Fold_change? What do they mean and how to caculate them? #56

zhenyisong opened this issue Jun 9, 2017 · 1 comment

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@zhenyisong
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Epic outputs the calculation result in delim format. The result columns include Score and Fold_change. I am not sure how they are derived from. Do you plan to explain them in details? I check the Sicer website and the software readme, it is not mentioned. It seems a common knowledge I missed.
@endrebak
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endrebak commented Jun 9, 2017

The paper explains it. FDR is BH, score is poisson score IIRC. Do not have time to write more now unfortunately but please keep the issue open. I might get around to it someday :)

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@zhenyisong @endrebak