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NICEATM requests consideration of addition of FDALabel. Can we add it to OKG? #11

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tomlue opened this issue Sep 28, 2023 · 1 comment
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@tomlue
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tomlue commented Sep 28, 2023

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@karafecho
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karafecho commented Dec 19, 2023

Translator pulls in annotation regarding FDA Approval Status using an Annotation Service. I reached out to Andrew Su (Scripps and a Translator / FRINK colleague of mine) about the service, and he replied with the following information:

The Annotation Service is a side project out of this repo https://github.com/biothings/pending.api (which yes, isn't very well documented). But the FDA approval status really comes from mychem.info, which is a longer-standing and more mature project. You can query mychem via any common chemical identifier (e.g., CHEBI:45783, CHEMBL941, DB00619 -- all for imatinib), and get drug approval status from chembl using the URL syntax below.
https://mychem.info/v1/chem/CHEBI:45783?fields=chembl.drug_indications
https://mychem.info/v1/chem/CHEMBL941?fields=chembl.drug_indications
https://mychem.info/v1/chem/DB00619?fields=chembl.drug_indications

I'll add that ChEMBL does not distinguish between FDA Approval for Marketing and FDA Clinical Research Phase 4, so FDA approval status is returned as: FDA Clinical Research Phase 1, 2, or 3, or FDA Clinical Research Phase 4 / FDA Approval for Marketing.

Chunlei Wu ([email protected]) is the lead developer of mychem. Happy to reach out to him, if that would be helpful.

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