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Create database #167
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Hello @gewenlong365 Also, do you want to use the CLI locally or do you prefer using web-based interfaces? Best wishes, |
@lmrodriguezr Thanks for reply |
@lmrodriguezr The process is as follows:
|
@lmrodriguezr hello!MiGA team~ ls daemon
d daemon.json maintenance MiGA:pseudo.output MiGA:pseudo.pid p status.json
miga ls -P . -p
name raw_reads trimmed_reads read_quality trimmed_fasta assembly cds essential_genes mytaxa mytaxa_scan taxonomy distances ssu stats
---- --------- ------------- ------------ ------------- -------- --- --------------- ------ ----------- -------- --------- --- -----
P_alcaligenes - - - - done done done done done done done done done
P_fluorescens - - - - done done done done done done done done done
P_mendocina - - - - done done done done done done done done done
P_putida - - - - done done done done done done done done done
P_stutzeri - - - - done done done done done done done done done
P_syringae - - - - done done done done done done done done done |
ok,sorry |
Hello @gewenlong365 , If you want a pre-indexed general-purpose reference database for classification, you can use
That database includes all available genome representatives for validly published species. If you prefer the GTDB taxonomy instead, you can also obtain the miga download -n GTDB_Anchor_Lite -v Or, you can see all the available databases: miga download --list |
I have a collection of fn files for bacteria,How do I create my reference genome as a database?
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