From ce04da9a5868e368d0ddf8ab2b7d8c0b67883895 Mon Sep 17 00:00:00 2001 From: Yasset Perez-Riverol Date: Sat, 6 Apr 2024 20:25:58 +0100 Subject: [PATCH] sdrf-pipelines 0.0.25 -> 0.0.26 --- modules/local/preprocess_expdesign.nf | 6 +++--- modules/local/samplesheet_check.nf | 6 +++--- modules/local/sdrfparsing/main.nf | 6 +++--- 3 files changed, 9 insertions(+), 9 deletions(-) diff --git a/modules/local/preprocess_expdesign.nf b/modules/local/preprocess_expdesign.nf index f47ec0c6..dbe01a79 100644 --- a/modules/local/preprocess_expdesign.nf +++ b/modules/local/preprocess_expdesign.nf @@ -6,11 +6,11 @@ process PREPROCESS_EXPDESIGN { tag "$design.Name" label 'process_low' - conda "bioconda::sdrf-pipelines=0.0.25" + conda "bioconda::sdrf-pipelines=0.0.26" if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { - container "https://depot.galaxyproject.org/singularity/sdrf-pipelines:0.0.25--pyhdfd78af_0" + container "https://depot.galaxyproject.org/singularity/sdrf-pipelines:0.0.26--pyhdfd78af_0" } else { - container "biocontainers/sdrf-pipelines:0.0.25--pyhdfd78af_0" + container "biocontainers/sdrf-pipelines:0.0.26--pyhdfd78af_0" } input: diff --git a/modules/local/samplesheet_check.nf b/modules/local/samplesheet_check.nf index ba8943cc..67d6a5f4 100644 --- a/modules/local/samplesheet_check.nf +++ b/modules/local/samplesheet_check.nf @@ -3,11 +3,11 @@ process SAMPLESHEET_CHECK { tag "$input_file" label 'process_single' - conda "bioconda::sdrf-pipelines=0.0.25" + conda "bioconda::sdrf-pipelines=0.0.26" if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { - container "https://depot.galaxyproject.org/singularity/sdrf-pipelines:0.0.25--pyhdfd78af_0" + container "https://depot.galaxyproject.org/singularity/sdrf-pipelines:0.0.26--pyhdfd78af_0" } else { - container "biocontainers/sdrf-pipelines:0.0.25--pyhdfd78af_0" + container "biocontainers/sdrf-pipelines:0.0.26--pyhdfd78af_0" } input: diff --git a/modules/local/sdrfparsing/main.nf b/modules/local/sdrfparsing/main.nf index 439ac3f7..5236c5de 100644 --- a/modules/local/sdrfparsing/main.nf +++ b/modules/local/sdrfparsing/main.nf @@ -2,10 +2,10 @@ process SDRFPARSING { tag "$sdrf.Name" label 'process_low' - conda "conda-forge::pandas_schema bioconda::sdrf-pipelines=0.0.25" + conda "conda-forge::pandas_schema bioconda::sdrf-pipelines=0.0.26" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/sdrf-pipelines:0.0.25--pyhdfd78af_0' : - 'biocontainers/sdrf-pipelines:0.0.25--pyhdfd78af_0' }" + 'https://depot.galaxyproject.org/singularity/sdrf-pipelines:0.0.26--pyhdfd78af_0' : + 'biocontainers/sdrf-pipelines:0.0.26--pyhdfd78af_0' }" input: path sdrf