Generate the BED12+10 Bed files

[ypriverol]

table pepBed
"BED12+13 bed File 1.0.0"
(
string chrom; "Reference sequence chromosome"
uint chromStart; "Start position of the first DNA base"
uint chromEnd; "End position of the last DNA base"
string name; "Unique name"
uint score; "Score"
char[1] strand; "+ or - for strand"
uint thickStart; "Coding region start"
uint thickEnd; "Coding region end"
uint reserved; "Always 0"
int blockCount; "Number of blocks"
int[blockCount] blockSizes; "Block sizes"
int[blockCount] chromStarts; "Block starts"
string proteinAccession; "Protein accession number"
string transcriptAccession; "Transcript accession number"
string peptideSequence; "Peptide sequence"
string proteinUniqueness; "Peptide uniqueness to the Protein"
string transcriptUniqueness; "Peptide uniqueness to the Transcript"
string genomeReferenceVersion; "Genome reference version number"
double psmScore; "PSM score"
double fdr; "False-discovery rate"
string modifications; "Post-translational modifications"
int charge; "Charge value"
double exp_mass_to_charge; "Experimental mass to charge value"
double calcMassToCharge; "Calculated mass to charge value"
int psmRank; "Peptide-Spectrum Match rank."
string datasetID; "Dataset Identifier"
string uri; "Uniform Resource Identifier"
)