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environment.yml
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name: sceptre
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- anyio=3.3.4=py37h89c1867_0
- argcomplete=1.12.3=pyhd8ed1ab_2
- argon2-cffi=21.1.0=py37h5e8e339_0
- arpack=3.7.0=hdefa2d7_2
- async_generator=1.10=py_0
- attrs=21.2.0=pyhd8ed1ab_0
- babel=2.9.1=pyh44b312d_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- bleach=4.1.0=pyhd8ed1ab_0
- brotlipy=0.7.0=py37h5e8e339_1001
- ca-certificates=2021.10.8=ha878542_0
- certifi=2021.10.8=py37h89c1867_0
- cffi=1.14.6=py37h036bc23_1
- chardet=4.0.0=py37h89c1867_1
- charset-normalizer=2.0.0=pyhd8ed1ab_0
- cryptography=35.0.0=py37h5d9358c_0
- debugpy=1.4.1=py37hcd2ae1e_0
- decorator=5.1.0=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- entrypoints=0.3=pyhd8ed1ab_1003
- glpk=4.65=h9202a9a_1004
- gmp=6.2.1=h58526e2_0
- icu=68.1=h58526e2_0
- idna=3.1=pyhd3deb0d_0
- importlib-metadata=4.8.1=py37h89c1867_0
- importlib_metadata=4.8.1=hd8ed1ab_0
- ipykernel=6.4.2=py37h6531663_0
- ipython=7.28.0=py37h6531663_0
- ipython_genutils=0.2.0=py_1
- jedi=0.18.0=py37h89c1867_2
- jinja2=3.0.2=pyhd8ed1ab_0
- json5=0.9.5=pyh9f0ad1d_0
- jsonschema=4.1.2=pyhd8ed1ab_0
- jupyter_client=7.0.6=pyhd8ed1ab_0
- jupyter_core=4.8.1=py37h89c1867_0
- jupyter_server=1.11.1=pyhd8ed1ab_0
- jupyterlab=3.2.1=pyhd8ed1ab_0
- jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
- jupyterlab_server=2.8.2=pyhd8ed1ab_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- libblas=3.9.0=12_linux64_openblas
- libcblas=3.9.0=12_linux64_openblas
- libffi=3.4.2=h9c3ff4c_4
- libgcc-ng=11.2.0=h1d223b6_11
- libgfortran-ng=11.2.0=h69a702a_11
- libgfortran5=11.2.0=h5c6108e_11
- libgomp=11.2.0=h1d223b6_11
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=12_linux64_openblas
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.18=pthreads_h8fe5266_0
- libsodium=1.0.18=h36c2ea0_1
- libstdcxx-ng=11.2.0=he4da1e4_11
- libxml2=2.9.12=h72842e0_0
- libzlib=1.2.11=h36c2ea0_1013
- markupsafe=2.0.1=py37h5e8e339_0
- matplotlib-inline=0.1.3=pyhd8ed1ab_0
- metis=5.1.0=h58526e2_1006
- mistune=0.8.4=py37h5e8e339_1004
- mpfr=4.1.0=h9202a9a_1
- nbclassic=0.3.2=pyhd8ed1ab_0
- nbclient=0.5.4=pyhd8ed1ab_0
- nbconvert=6.2.0=py37h89c1867_0
- nbformat=5.1.3=pyhd8ed1ab_0
- ncurses=6.2=h58526e2_4
- nest-asyncio=1.5.1=pyhd8ed1ab_0
- notebook=6.4.5=pyha770c72_0
- openssl=1.1.1l=h7f98852_0
- packaging=21.0=pyhd8ed1ab_0
- pandoc=2.14.2=h7f98852_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- parso=0.8.2=pyhd8ed1ab_0
- pexpect=4.8.0=pyh9f0ad1d_2
- pickleshare=0.7.5=py_1003
- pip=21.3=pyhd8ed1ab_0
- prometheus_client=0.11.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.20=pyha770c72_0
- ptyprocess=0.7.0=pyhd3deb0d_0
- pycparser=2.20=pyh9f0ad1d_2
- pygments=2.10.0=pyhd8ed1ab_0
- pyopenssl=21.0.0=pyhd8ed1ab_0
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyrsistent=0.17.3=py37h5e8e339_2
- pysocks=1.7.1=py37h89c1867_3
- python=3.7.10=hb7a2778_104_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python_abi=3.7=2_cp37m
- pytz=2021.3=pyhd8ed1ab_0
- pyzmq=22.3.0=py37h336d617_0
- readline=8.1=h46c0cb4_0
- requests=2.26.0=pyhd8ed1ab_0
- requests-unixsocket=0.2.0=py_0
- send2trash=1.8.0=pyhd8ed1ab_0
- setuptools=58.2.0=py37h89c1867_0
- six=1.16.0=pyh6c4a22f_0
- sniffio=1.2.0=py37h89c1867_1
- sqlite=3.36.0=h9cd32fc_2
- suitesparse=5.10.1=h9e50725_1
- tbb=2021.4.0=h4bd325d_0
- terminado=0.12.1=py37h89c1867_0
- testpath=0.5.0=pyhd8ed1ab_0
- tk=8.6.11=h27826a3_1
- tornado=6.1=py37h5e8e339_1
- traitlets=5.1.0=pyhd8ed1ab_0
- typing_extensions=3.10.0.2=pyha770c72_0
- urllib3=1.26.7=pyhd8ed1ab_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- webencodings=0.5.1=py_1
- websocket-client=0.57.0=py37h89c1867_4
- wheel=0.37.0=pyhd8ed1ab_1
- xz=5.2.5=h516909a_1
- zeromq=4.3.4=h9c3ff4c_1
- zipp=3.6.0=pyhd8ed1ab_0
- zlib=1.2.11=h36c2ea0_1013
- pip:
- adjusttext==0.7.3
- anndata==0.7.6
- cached-property==1.5.2
- cycler==0.10.0
- fastcluster==1.2.4
- h5py==2.10.0
- igraph==0.9.8
- joblib==1.1.0
- kiwisolver==1.3.2
- leidenalg==0.8.8
- llvmlite==0.37.0
- matplotlib==3.4.3
- matplotlib-venn==0.11.6
- natsort==7.1.1
- networkx==2.6.3
- numba==0.54.1
- numexpr==2.7.3
- numpy==1.20.3
- pandas==1.3.4
- patsy==0.5.2
- pillow==8.4.0
- pynndescent==0.5.5
- python-igraph==0.9.8
- scanpy==1.8.1
- sceptre==1.1
- scikit-learn==1.0
- scipy==1.7.1
- seaborn==0.11.2
- sinfo==0.3.4
- statsmodels==0.13.0
- stdlib-list==0.8.0
- tables==3.6.1
- texttable==1.6.4
- threadpoolctl==3.0.0
- tqdm==4.62.3
- umap-learn==0.5.1
- xlrd==1.2.0
prefix: /home/bfurtwa/miniconda3/envs/sceptre