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Version v1.0:
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* Fix an issue with Java 7 that causes an IllegalStateException.
Version v0.9:
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* Make ActogramJ a Maven project, so it can be compiled with Fiji's new
compilation workflow.
* Provide source code on github (https://github.com/bene51/ActogramJ).
* New icons.
* Restore pointer mode (pointing, selection, or drawing a freerunning period
triangle) when changing the displayed actogram.
* Clamp the selection in case the mouse is moved outside of the actogram data
(instead of not drawing the selection at all).
* Introduce markers
* Calculate the acrophases over a selection (and optionally fit a regression
line to them).
* Calculate the on-/offsets over a selection (and optionally fit regression
lines to them).
Version v0.8:
-------------
* Fix a bug when exporting multiple actograms to pdf.
* Let the user choose an upper and a lower limit for the activity:
Lower values than the lower limit count as 0.
Higher values than the upper limit count as 'upper limit'
* Allow to open files which are separated by other characters than tabs.
Version v0.7:
-------------
* Update ActogramJ so that it now works (and needs) the itext
version which is currently included in Fiji, i.e. itextpdf-5.1.1.jar
Version v0.6:
-------------
* Fix an error which occurred sometimes when zooming in.
* Draw line numbers in the actograms.
* Draw a title for each actogram.
* The default number of indicated peaks in periodograms is now 1.
* Allow for optional downsampling before calculating periodograms.
* Replace "_convolved" with "_smoothed" in the name of calculated actograms.
* Fix an error in writing text to Pdfs.
* The jar archive contains now the source code.
Version v0.5:
-------------
* In the average activity pattern dialog, use a default sigma of 0.
* In the average activity pattern dialog, take the interval duration into
account when calculating the default period.
* Same for the periodogram dialog.
* In the periodogram dialog, narrow the lower and upper period limits
for faster computation.
* Periodograms: Use gaussian smoothing instead of downsampling.
Version v0.4:
-------------
* Fix the calculation of p values in the periodograms. For the Fourier method,
p values are disabled because they would require the periodogram to be
calculated for all possible period lengths, which in general takes too long
to calculate.
* For other types of periodograms, the user can now specify the p value level.
* Fix axis calibration in the periodogram diagrams.
* In the "Open" dialog, the input fields "number of rows" and "number of
columns" are replaced by "end row" and "end column".
* Fix some problems with zooming.
* Implement the calculation of average activity patterns.
Version v0.3:
-------------
* Make preview table in the 'Open' dialog capable of reading lines with a
different number of columns.
* Introduce three modes for pointing, selecting and manual determination of
the freerunning period.
* Implement generic drawing to do screen and pdf rendering with the same code.
* Allow to change the ratio w:h of an actogram.
* Introduce environmental bars for light, temperature, etc.
* Automatic determination of the freerunning period with the Fourier, Chi-Square
(Enright) and Lomb-Scargle methods.
* Simplify the 'Calculate' window.
* Fix wrong sorting for multiple selected actograms.
* Adjustable units for the freerunning period string.
* Introduce zoom out.
* Allow to open several actogram files with the same parameters simultaneously.
* Add a menu bar.
* Implement normalizing of multiple actograms to the same overall activity.
* Add documentation.
Version v0.2:
-------------
* Calibration bar with adjustable number of subdivisions
The number of subdivisions can be adjusted by clicking on the
'Preferences' icon.
* Allow to remove files from the display by right-clicking.
* 'Freerunning period' is in black now.
* In the 'Preferences' dialog, 'number of periods per line' is changed to
'number of plots'.
* Simple calculations of actograms, invoked by clicking on the 'Calculate' icon.
- Summing or averaging the displayed/selected actograms.
- Smoothing individual actograms.
The results of the calculations are displayed under the tree entry
'Calculated'.
* The preview table in the open dialog does not crash any more when
the file to open contains plain text at the beginning.
* Fix the constant shift at the beginning of the actograms.
Version v0.1:
-------------
* First public version.