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Sample Code - Working with Datasets Using R

A repository containing the sample scripts described in the Working with Datasets Using R developer guide.

Provided for educational purposes only; not for production use.

Configuration and Setup

  1. Create a Benchling App
  2. Create a Benchling Analysis
  3. Configure the sample script(s) with your tenant-specific variables

Usage

  • get_dataframe.R pulls the input dataset from a Benchling analysis and converts it into an R dataframe.
  • results_analysis.R performs an IC50 calculation on a dataframe, creates a plot, and imports both as outputs to a Benchling analysis.
  • Mortality IC50.csv contains basic sample data of the form required by results_analysis.R

It's recommended to start by working with get_dataframe.R and results_analysis.R in order to familiarize yourself with the principles involved. For best results, these should be run sequentially, since the latter expects a dataframe to be imported. Once you're confident using the scripts and with the configuration in Benchling, the techniques involved can be applied to more robust applications using tools like Rshiny.