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some substep of make porepare failing #4

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turbomam opened this issue Oct 12, 2021 · 2 comments
Open

some substep of make porepare failing #4

turbomam opened this issue Oct 12, 2021 · 2 comments

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@turbomam
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mkdir -p build
python3 src/pick_genomes.py data/ANI build/reference_genomes.csv
mkdir -p data/reference_genomes
sshpass -p PASSWORD scp -T [email protected]:"" data/reference_genomes

scp: .: not a regular file
make: *** [Makefile:34: mirror_genomes] Error 1
@turbomam
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completes successfully

# 3. Select best match to unicycler_assembly
build/reference_genomes.csv: src/pick_genomes.py | build 
	python3 $< data/ANI $@

@turbomam
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build/reference_genomes.csv empty

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@turbomam