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Covariates for skygrid in BEAuti

beauti

enhancement

Status: Open.

#1169 In beast-dev/beast-mcmc;

· plemey opened on Mar 6, 2024

Can not fully use GPU?

bug

Status: Open.

#1079 In beast-dev/beast-mcmc;

· LauraVP1994 opened on Jan 23, 2020

Parsing error for BEAUTi-generated xml file for directional random walk model

beauti

bug

Status: Open.

#1083 In beast-dev/beast-mcmc;

· mlewinsohn opened on May 5, 2020

Importing partition information in BEAUti 1.10.x

beauti

bug

Status: Open.

#1066 In beast-dev/beast-mcmc;

· GuyBaele opened on Jul 23, 2019

Running beast with MC3 fails

BEAST

bug

Status: Open.

#1019 In beast-dev/beast-mcmc;

· EnzoAndree opened on Aug 29, 2018

Refactor SumParameter, DifferenceParameter and ProductParameter classes

enhancement

help wanted

Status: Open.

#789 In beast-dev/beast-mcmc;

· msuchard opened on Jan 14, 2016

Update/fix example files

help wanted

Status: Open.

#1177 In beast-dev/beast-mcmc;

· rambaut opened on Apr 27, 2024

HPM operators in BEAUti

beauti

enhancement

Status: Open.

#930 In beast-dev/beast-mcmc;

· GuyBaele opened on Aug 13, 2017

logcombiner sometimes selects wrong states?

bug

Status: Open.

#857 In beast-dev/beast-mcmc;

· bramvrancken opened on Jan 6, 2017

Migrate Ancestral States and Markov Jumps to TreeDataLikelihood

BEAST

enhancement

help wanted

Status: Open.

#1059 In beast-dev/beast-mcmc;

· rambaut opened on May 17, 2019

Pick better starting values in BEAUti where scaled by tree size (i.e. pop-size)

beauti

enhancement

Status: Open.

#823 In beast-dev/beast-mcmc;

· msuchard opened on Jul 21, 2016

Need way of specifying tip local clocks in BEAUti

beauti

enhancement

Status: Open.

#1012 In beast-dev/beast-mcmc;

· rambaut opened on Aug 13, 2018

Debug dump doesn't work with skygrid+covariates+BSSVS

Status: Open.

#992 In beast-dev/beast-mcmc;

· GuyBaele opened on May 29, 2018

Need scaled logit for generalized stepping-stone sampling?

enhancement

Status: Open.

#953 In beast-dev/beast-mcmc;

· GuyBaele opened on Aug 31, 2017

Check for 0s or (0/1s) in BEAUti GLM import

beauti

enhancement

Status: Open.

#952 In beast-dev/beast-mcmc;

· msuchard opened on Aug 31, 2017

Add half a year to sampling date when performing tip date sampling

enhancement

Status: Open.

#919 In beast-dev/beast-mcmc;

· GuyBaele opened on Aug 2, 2017

Add covariates for skygrid in BEAUti

beauti

enhancement

Status: Open.

#918 In beast-dev/beast-mcmc;

· rambaut opened on Aug 2, 2017

Add fixed effects on rates or hierarchical parameters.

beauti

enhancement

Status: Open.

#917 In beast-dev/beast-mcmc;

· rambaut opened on Aug 2, 2017

Test priors on alpha parameter of discrete gamma heterogeneity using simulation

BEAST

enhancement

Status: Open.

#908 In beast-dev/beast-mcmc;

· rambaut opened on Jul 20, 2017

Switch GLMSubstitutionModel to use the new GLM package.

BEAST

enhancement

Status: Open.

#903 In beast-dev/beast-mcmc;

· rambaut opened on Jul 4, 2017

Flatlining of geo.rates parameter

BEAST

bug

Status: Open.

#887 In beast-dev/beast-mcmc;

· maxbiostat opened on May 17, 2017

Allow user to add set of TMRCAs for ancestral state reconstruction

beauti

enhancement

Status: Open.

#859 In beast-dev/beast-mcmc;

· rambaut opened on Jan 18, 2017

Explicitly allow setting of reconstructing states at tips

beauti

enhancement

Status: Open.

#858 In beast-dev/beast-mcmc;

· rambaut opened on Jan 7, 2017

LogCombiner should add comments about original state for each tree

BEAST

enhancement

Status: Open.

#856 In beast-dev/beast-mcmc;

· rambaut opened on Dec 12, 2016

TreeAnnotator should record source file information in header comments

BEAST

enhancement

Status: Open.

#848 In beast-dev/beast-mcmc;

· rambaut opened on Dec 1, 2016