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1 | | -# scheme |
2 | | -Scheme Library for Conformational Search |
3 | 1 |
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4 | | -This repository is a temporary solution to the issue of multiple versions of "RifDock" being available in the wild. This repository's master branch will be considered "Master Rifdock" from now until a new master appears. |
5 | 2 |
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6 | | -Ideally RifDock should be merged into Rosetta, but no one has stepped up to this herculean task yet. Most would be in favor of such a merge, so if you have a month to kill, perhaps you can add RifDock (and its unit tests) to Rosetta. |
7 | | - |
8 | | - |
9 | | -***Building*** |
10 | | - |
11 | | -RifDock links against Rosetta. While RifDock may be compatible with the bleeding edge version of Rosetta, the last known-good build can be found on the following branch: |
12 | | - |
13 | | -<b>Last known-good Rosetta branch</b>: bcov/stable1 |
14 | | - |
15 | | -This section needs work, but the gist is: |
16 | | - |
17 | | -Optain a copy of gcc with version >= 4.9 (I have no idea if this is the minimum version) |
18 | | - |
19 | | -Build a Rosetta cxx11_omp build with: |
20 | | -cd rosetta/main/source |
21 | | -CXX=/my/g++/version CC=/my/gcc/version ./ninja_build cxx11_omp -remake |
22 | | - |
23 | | -Clone this repository and perform: |
24 | | -cd scheme |
25 | | -mkdir build |
26 | | -cd build |
27 | | -CXX=/my/g++/version CC=/my/gcc/version CMAKE_ROSETTA_PATH=/Path/to/a/rosetta/main cmake .. -DCMAKE_BUILD_TYPE=Release |
28 | | -make -j3 rif_dock_test rifgen |
29 | | - |
30 | | -There is an optional CMAKE flag if you do did not link against the standard cxx11_omp build to specify which build you did use. That flag is as follows: |
31 | | -CMAKE_FINAL_ROSETTA_PATH=/Path/to/a/rosetta/main/source/cmake/build_my_custom_build_type |
32 | | - |
33 | | -Use this flag in addition to the CMAKE_ROSETTA_PATH flag. |
34 | | - |
35 | | -Unit tests may be built with: |
36 | | -make test_libscheme |
37 | | - |
38 | | -***Running*** |
39 | | - |
40 | | -The executables for RifDock are built at: |
41 | | -scheme/build/apps/rosetta/rifgen |
42 | | -scheme/build/apps/rosetta/rif_dock_test |
43 | | - |
44 | | -The unit test executable is at: |
45 | | -scheme/build/schemelib/test/test_libscheme |
46 | | - |
47 | | - |
48 | | -***Modifying*** |
49 | | - |
50 | | -RifDock is licenced under the <insert license here file>. We only ask that if you update RifDock to build against a new version of Rosetta, that you branch (or tag or something else) a snapshot and edit this wiki so that others can build against a known-good version of rosetta. |
| 3 | +The up-to-date RifDock repository that you want to use is here: |
| 4 | +https://github.com/rifdock/rifdock |
51 | 5 |
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| 6 | +Do not use this repository. |
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