From eca3e602f4fd411db238ce441efefec3a5fbe983 Mon Sep 17 00:00:00 2001 From: unknown Date: Tue, 9 May 2023 10:19:17 +0200 Subject: [PATCH] temporary anoncode_and_accessionNumber.json file creation disabled --- scripts/deiden/src/deidTest_pyd.py | 26 +++++++++++++------------- 1 file changed, 13 insertions(+), 13 deletions(-) diff --git a/scripts/deiden/src/deidTest_pyd.py b/scripts/deiden/src/deidTest_pyd.py index 3b91315..9e915fa 100755 --- a/scripts/deiden/src/deidTest_pyd.py +++ b/scripts/deiden/src/deidTest_pyd.py @@ -127,16 +127,16 @@ def _find_or_create_anoncode(image, db, fields): return p, image -def save_new_images_data(images): - data = [] - for image in images: - data.append( { - "imageId": image.imageId, - "anoncode": image.patient.anoncode - }) - file_path = os.path.join(os.path.abspath(os.sep), 'tmp', 'anoncode_and_accessionNumber.json') - with open(file_path, 'w') as f: - json.dump(data, f) +# def save_new_images_data(images): +# data = [] +# for image in images: +# data.append( { +# "imageId": image.imageId, +# "anoncode": image.patient.anoncode +# }) +# file_path = os.path.join(os.path.abspath(os.sep), 'tmp', 'anoncode_and_accessionNumber.json') +# with open(file_path, 'w') as f: +# json.dump(data, f) def main(args): patients = LocalDB(verbose=False, sqlfile=args.db_location) @@ -177,15 +177,15 @@ def main(args): _saveHeaders(dicom_files, hdirpre) updated_ids = dict() - new_images = [] + # new_images = [] for image, fields in ids.items(): p, im = _find_or_create_anoncode(image, patients, fields) fields['entity_id'] = p.anoncode updated_ids[image] = fields - new_images.append(im) + # new_images.append(im) - save_new_images_data(new_images) + # save_new_images_data(new_images) cleaned_files = replace_identifiers(dicom_files=dicom_files, deid=recipe, ids=updated_ids,