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I want to run LFMM2 on my data. The lfmm_ridge function works fine, but when I use the lfmm_lasso function, I keep getting the error:
Error in tcrossprod(crossprod(x, U), V) : non-conformable arguments
I think it has something to do with
the fact that I use K = 1, because when I change to K = 2, everything works fine; and
the R version I'm using (which is the newest one: R version 3.6.0 (2019-04-26) -- "Planting of a Tree"). I was running it before with an older version (R 3.4.4, "Someone to Lean On"), which worked fine.
Please find below a zip-folder containing a file envFile.env (with the explanatory variables) and a file genoFile.lfmm (with the response variables) as well as the R script I use to run the ridge and lasso regression. I hope you can reproduce the error, otherwise please let me know.
Hi,
I want to run LFMM2 on my data. The
lfmm_ridge
function works fine, but when I use thelfmm_lasso
function, I keep getting the error:Error in tcrossprod(crossprod(x, U), V) : non-conformable arguments
I think it has something to do with
Please find below a zip-folder containing a file envFile.env (with the explanatory variables) and a file genoFile.lfmm (with the response variables) as well as the R script I use to run the ridge and lasso regression. I hope you can reproduce the error, otherwise please let me know.
I would be very grateful for a quick response!
Cheers,
Madleina
reportBug.zip
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