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Wrong bcbio-nextgen versioned pinned in requirements file for v1.2.2 and later #3705

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asee-imagia opened this issue Mar 31, 2023 · 1 comment

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@asee-imagia
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Hi!

We've been modifying the install script that you provide in order to ensure reproducibility. For example, we are pining the uri of files that are fetched to a specific version of the repo instead of the master branch (eg: 1.2.9). We we're running into problems, and realized that the version pinned in the requirements.txt file is wrong for versions 1.2.2

bcbio-nextgen==1.2.1
to 1.2.9
bcbio-nextgen==1.2.8
Would it be possible to look into fixing this, at least for v1.2.9?

Thank you!

@naumenko-sa
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I thought it is 1.2.9 in the requirements for 1.2.9?:
https://github.com/bcbio/bcbio-nextgen/blob/master/requirements.txt

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