diff --git a/unravel/docs/_build/doctrees/environment.pickle b/unravel/docs/_build/doctrees/environment.pickle
index 776cba5f..272d7b39 100644
Binary files a/unravel/docs/_build/doctrees/environment.pickle and b/unravel/docs/_build/doctrees/environment.pickle differ
diff --git a/unravel/docs/_build/doctrees/index.doctree b/unravel/docs/_build/doctrees/index.doctree
index 7b098570..4f463dbf 100644
Binary files a/unravel/docs/_build/doctrees/index.doctree and b/unravel/docs/_build/doctrees/index.doctree differ
diff --git a/unravel/docs/_build/html/_sources/index.rst.txt b/unravel/docs/_build/html/_sources/index.rst.txt
index ca1c51bc..c8deabd4 100644
--- a/unravel/docs/_build/html/_sources/index.rst.txt
+++ b/unravel/docs/_build/html/_sources/index.rst.txt
@@ -5,7 +5,7 @@
    
 .. raw:: html
 
-    <a href="https://github.com/b-heifets/UNRAVEL/tree/dev" target="_blank">
+    <a href="https://github.com/b-heifets/UNRAVEL/tree/main" target="_blank">
         <img id="unravel-logo" src="_static/UNRAVEL_logo.png" alt="UNRAVEL Logo" class="custom-logo" style="background-color: transparent;">
     </a>
 
@@ -48,7 +48,7 @@ UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet
     * Quantification of cell/label densities across the brain
     * Voxel-wise analysis of fluorescent signals and cluster correction
     * Validation of hot/cold spots via cell/label density quantification at cellular resolution
-* `UNRAVEL GitHub repository <https://github.com/b-heifets/UNRAVEL/tree/dev>`_
+* `UNRAVEL GitHub repository <https://github.com/b-heifets/UNRAVEL/tree/main>`_
 * `Initial UNRAVEL publication <https://www.nature.com/articles/s41386-023-01613-4>`_
 * UNRAVEL was developed by `the Heifets lab <https://heifetslab.stanford.edu/>`_ and `TensorAnalytics <https://sites.google.com/view/tensoranalytics/home?authuser=0>`_
 * Additional support/guidance was provided by:
diff --git a/unravel/docs/_build/html/index.html b/unravel/docs/_build/html/index.html
index bae1f139..21afa39f 100644
--- a/unravel/docs/_build/html/index.html
+++ b/unravel/docs/_build/html/index.html
@@ -323,7 +323,7 @@
 <div id="searchbox"></div>
                 <article class="bd-article">
                   
-  <a href="https://github.com/b-heifets/UNRAVEL/tree/dev" target="_blank">
+  <a href="https://github.com/b-heifets/UNRAVEL/tree/main" target="_blank">
     <img id="unravel-logo" src="_static/UNRAVEL_logo.png" alt="UNRAVEL Logo" class="custom-logo" style="background-color: transparent;">
 </a><style>
     video {
@@ -362,7 +362,7 @@ <h1>UN-biased high-Resolution Analysis and Validation of Ensembles using Light s
 </dd>
 </dl>
 </li>
-<li><p><a class="reference external" href="https://github.com/b-heifets/UNRAVEL/tree/dev">UNRAVEL GitHub repository</a></p></li>
+<li><p><a class="reference external" href="https://github.com/b-heifets/UNRAVEL/tree/main">UNRAVEL GitHub repository</a></p></li>
 <li><p><a class="reference external" href="https://www.nature.com/articles/s41386-023-01613-4">Initial UNRAVEL publication</a></p></li>
 <li><p>UNRAVEL was developed by <a class="reference external" href="https://heifetslab.stanford.edu/">the Heifets lab</a> and <a class="reference external" href="https://sites.google.com/view/tensoranalytics/home?authuser=0">TensorAnalytics</a></p></li>
 <li><dl class="simple">
diff --git a/unravel/docs/index.rst b/unravel/docs/index.rst
index ca1c51bc..c8deabd4 100644
--- a/unravel/docs/index.rst
+++ b/unravel/docs/index.rst
@@ -5,7 +5,7 @@
    
 .. raw:: html
 
-    <a href="https://github.com/b-heifets/UNRAVEL/tree/dev" target="_blank">
+    <a href="https://github.com/b-heifets/UNRAVEL/tree/main" target="_blank">
         <img id="unravel-logo" src="_static/UNRAVEL_logo.png" alt="UNRAVEL Logo" class="custom-logo" style="background-color: transparent;">
     </a>
 
@@ -48,7 +48,7 @@ UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet
     * Quantification of cell/label densities across the brain
     * Voxel-wise analysis of fluorescent signals and cluster correction
     * Validation of hot/cold spots via cell/label density quantification at cellular resolution
-* `UNRAVEL GitHub repository <https://github.com/b-heifets/UNRAVEL/tree/dev>`_
+* `UNRAVEL GitHub repository <https://github.com/b-heifets/UNRAVEL/tree/main>`_
 * `Initial UNRAVEL publication <https://www.nature.com/articles/s41386-023-01613-4>`_
 * UNRAVEL was developed by `the Heifets lab <https://heifetslab.stanford.edu/>`_ and `TensorAnalytics <https://sites.google.com/view/tensoranalytics/home?authuser=0>`_
 * Additional support/guidance was provided by: