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retaining complete fasta header seqids (not just 10 characters) calc_word.py #2

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hasibaasma opened this issue Dec 7, 2020 · 0 comments

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@hasibaasma
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Hi,

I am running alfpy's calc_word.py, using following parameters.

calc_word.py --fasta crms_DMEL.fasta --word_size 2 --distance canberra --vector freqs --outfmt phylip --out outEcto2.txt

However in my output matrix I get only 10 characters of my header, which are usually same for my sequences.. I can see its hard coded in alfpy/utils/distmatrix.py and I tried to change that to 20, but it still printed 10 of those.. I don't know if its hard coded somewhere else too.. is there a solution to it?
thanks!

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