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Update pyproject.toml for PyTorch versions #107

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merged 5 commits into from
Jun 19, 2024
Merged

Update pyproject.toml for PyTorch versions #107

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60adad3
Update pyproject.toml for PyTorch versions
Neeratyoy Jun 18, 2024
4f41366
Update pyproject.toml
Neeratyoy Jun 18, 2024
6f539e8
Update pyproject.toml
karibbov Jun 18, 2024
e8a1868
Cast Path to str
karibbov Jun 18, 2024
ade69db
Fix AttributeError: 'int' object has no attribute 'nodes'
karibbov Jun 18, 2024
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15 changes: 10 additions & 5 deletions neps/optimizers/bayesian_optimization/kernels/utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -33,11 +33,16 @@ def extract_configs(configs: list[SearchSpace]) -> Tuple[list, list]:
"""
config_hps = [conf.get_normalized_hp_categories() for conf in configs]
graphs = [hps["graphs"] for hps in config_hps]

_nested_graphs = np.array(graphs, dtype=object)
if _nested_graphs.ndim == 3:
graphs = _nested_graphs[:, :, 0].reshape(-1).tolist()

# Don't call np.array on structured objects
# https://github.com/numpy/numpy/issues/24546#issuecomment-1693913119
# _nested_graphs = np.array(graphs, dtype=object)
# if _nested_graphs.ndim == 3
# graphs = _nested_graphs[:, :, 0].reshape(-1).tolist()
# Long hand way of doing the above
if (len(graphs) > 0 and isinstance(graphs[0], list)
and len(graphs[0]) > 0 and isinstance(graphs[0][0], list)):
res = [_list for list_of_list in graphs for _list in list_of_list]
graphs = res
return graphs, config_hps


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5 changes: 3 additions & 2 deletions pyproject.toml
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Expand Up @@ -55,7 +55,8 @@ pandas = "^2"
networkx = "^2.6.3"
nltk = "^3.6.4"
scipy = "^1"
torch = ">=1.7.0,<=2.1, !=2.0.1, !=2.1.0" # fix from: https://stackoverflow.com/a/76647180
# torch = ">=1.7.0,<=2.1, !=2.0.1, !=2.1.0" # fix from: https://stackoverflow.com/a/76647180
torch = ">1.7.0,!=2.0.1, !=2.1.0"
matplotlib = "^3"
more-itertools = "*"
portalocker = "^2"
Expand All @@ -70,7 +71,7 @@ pre-commit = "^3"
mypy = "^1"
pytest = "^7"
types-PyYAML = "^6"
torchvision = "<0.16.0" # Used in examples
torchvision = ">=0.8.0" # Used in examples
mkdocs-material = "*"
mkdocs-autorefs = "*"
mkdocs-gen-files = "*"
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4 changes: 2 additions & 2 deletions tests/test_examples.py
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Expand Up @@ -51,9 +51,9 @@ def no_logs_gte_error(caplog):
def test_core_examples(example):
if example.name == "analyse.py":
# Run hyperparameters example to have something to analyse
runpy.run_path(core_examples_scripts[0], run_name="__main__")
runpy.run_path(str(core_examples_scripts[0]), run_name="__main__")

runpy.run_path(example, run_name="__main__")
runpy.run_path(str(example), run_name="__main__")


@pytest.mark.ci_examples
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