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page describes the graphical notation for ontology diagrams generated by owl-cli. There is no standard diagram notation for OWL, but a number of tools provide their own notation. Popular options are the Protégé plugins OWLViz and OntoGraf, as well as the graphical notation of Topbraid Composer. Most notations have a strong focus on class and instance relationships, which is well-suited for visualizing this particular kind of ontology. However, other types of axioms, in particular more complex class expressions, are usually not represented. For this reason, during the writing of the PhD thesis, a more general graphical notation for ontologies was developed. The notation by owl-cli is influenced by the following other notations for OWL ontologies: The symbols and colors for classes, properties and data types as popularized by the Protégé ontology editor and also used by Topbraid Composer. The notation from the PhD thesis (as shown on pages 43 and 44), but with less focus on Description Logics notation and instead using the expressions syntax from Protégé. Arrows from UML (hollow arrow for inheritance, solid arrow for relations). Representation of OWL class restrictions and other elements in the specification of the OMG Ontology Definition Metamodel 1.1, cf. for example Figures 14.25, 14.26 and 14.27. The symbol for disjoint unions that is used in VOWL. The notation was designed with the following goals in mind: It must be possible to represent all OWL axioms in a meaningful way. The diagrams are used mainly for visualizing in documents, not necessarily for interactively editing an ontology. The diagram should be understandable for people familiar with the Protégé editor, because it is probably the most popular ontology editor. The semantics should be unambiguous from the visual representation: For example, using a UML-like class diagram for an OWL class that includes properties in its box like class attributes in UML is not self-explanatory: Are the properties restrictions on the class (existential? universal? both?), is the class the domain of the properties? Both have very different meanings than what a UML-like representation suggests. The following sections describe the graphical notation using examples. All diagrams on this page were generated with owl-cli. Each diagram links to the RDF/Turtle file it was generated from. Table 1. Mapping Syntax for OWL Element Types OWL Element Description Logics Notation Diagram Class( ) ObjectProperty( ) DataProperty( ) AnnotationProperty( ) no notation NamedIndividual( ) Datatype( ) no notation This section is aligned to the corresponding section in the OWL 2 Specification. Table 2. Mapping Syntax for Data Ranges OWL Expression Description Logics Notation Diagram DataIntersectionOf( ) DataUnionOf( ) DataComplementOf( ) DataOneOf( ) DatatypeRestriction( int minExclusive 4 maxInclusive 10 ) no notation The outline of this section is aligned to the corresponding section in the OWL 2 Specification. Table 3. Mapping Syntax for Propositional Connectives and Enumeration of Individuals OWL Expression Description Logics Notation Diagram ObjectIntersectionOf( ) ObjectUnionOf( ) ObjectComplementOf( ) ObjectOneOf( ) Table 4. Mapping Syntax for Object Property Restrictions OWL Expression Description Logics Notation Diagram ObjectSomeValuesFrom( ) ObjectAllValuesFrom( ) ObjectHasValue( ) ObjectInverseOf( ) ObjectHasSelf( ) Table 5. Mapping Syntax for Object Property Cardinality Restrictions OWL Expression Description Logics Notation Diagram ObjectMinCardinality( ) ObjectMinCardinality( ) ObjectMaxCardinality( ) ObjectMaxCardinality( ) ObjectExactCardinality( ) ObjectExactCardinality( ) Table 6. Mapping Syntax for Data Property Restrictions OWL Expression Description Logics Notation Diagram DataSomeValuesFrom( ) DataAllValuesFrom( ) DataHasValue( ) Table 7. Mapping Syntax for Data Property Cardinality Restrictions OWL Expression Description Logics Notation Diagram DataMinCardinality( ) DataMaxCardinality( ) DataExactCardinality( ) The outline of this section is aligned to the corresponding section in the OWL 2 Specification. Table 8. Mapping Syntax for Class Expression Axioms OWL Axiom Description Logics Notation Diagram SubClassOf( ) EquivalentClasses( ) DisjointClasses( ) DisjointUnion( ) Table 9. Mapping Syntax for Object Property Axioms OWL Axiom Description Logics Notation Diagram SubObjectPropertyOf( ) ObjectPropertyChain( ) EquivalentObjectProperties( ) DisjointObjectProperties( ) InverseObjectProperties( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) FunctionalObjectProperty( ) InverseFunctionalObjectProperty( ) ReflexiveObjectProperty( ) IrreflexiveObjectProperty( ) SymmetricObjectProperty( ) AsymmetricObjectProperty( ) TransitiveObjectProperty( ) Table 10. Mapping Syntax for Data Property Axioms OWL Axiom Description Logics Notation Diagram SubDataPropertyOf( ) EquivalentDataProperties( ) DisjointDataProperties( ) DataPropertyDomain( ) DataPropertyRange( ) FunctionalDataProperty( ) Table 11. Mapping Syntax for Datatype Definitions OWL Axiom Description Logics Notation Diagram DatatypeDefinition( ) no notation Table 12. Mapping Syntax for Keys OWL Axiom Description Logics Notation Diagram HasKeys( ) no notation Table 13. Mapping Syntax for Assertions OWL Axiom Description Logics Notation Diagram SameIndividuals( ) DifferentIndividuals( ) ClassAssertion( ) ObjectPropertyAssertion( ) NegativeObjectPropertyAssertion( ) DataPropertyAssertion( ) NegativeDataPropertyAssertion( ) Rules defined in the Semantic Web Rule Language (SWRL) can be embedded in an OWL ontology. Rules are rendered as described in Human Readable Syntax, and are linked with the ontology entities they refer to. The following table shows rendering examples for the different kinds of rule atoms. Table 14. Mapping Syntax for SWRL Rules Atom Type Diagram Class Class with Expression Object Property Data Property, Data Range Data Property, Builtin","title":"OWL Diagram Notation","component":"main","version":"snapshot","name":"diagram-notation","url":"/main/snapshot/diagram-notation.html","titles":[{"text":"Introduction","id":"introduction"},{"text":"Element Types","id":"element-types"},{"text":"Data Ranges","id":"data-ranges"},{"text":"Class Expressions","id":"class-expressions"},{"text":"Propositional Connectives and Enumeration of Individuals","id":"propositional-connectives-and-enumeration-of-individuals"},{"text":"Object Property Restrictions","id":"object-property-restrictions"},{"text":"Object Property Cardinality Restrictions","id":"object-property-cardinality-restrictions"},{"text":"Data Property Restrictions","id":"data-property-restrictions"},{"text":"Data Property Cardinality Restrictions","id":"data-property-cardinality-restrictions"},{"text":"Axioms","id":"axioms"},{"text":"Class Expression Axioms","id":"class-expression-axioms"},{"text":"Object Property Axioms","id":"object-property-axioms"},{"text":"Data Property Axioms","id":"data-property-axioms"},{"text":"Datatype Definitions","id":"datatype-definitions"},{"text":"Keys","id":"keys"},{"text":"Assertions","id":"assertions"},{"text":"SWRL Rules","id":"swrl-rules"}]},"/main/snapshot/index.html":{"text":"(Version snapshot) owl-cli is a command line tool for ontology engineering. It targets the Web Ontology Language (OWL 2) and RDF. You can generate a diagram for an OWL ontology with the diagram command read any RDF document in RDF/Turtle, RDF/XML, RDF N-Triples or N3 format and write it in configurable, pretty-printed RDF/Turtle or one of the other formats using the write command perform OWL DL reasoning on an input ontology using the infer command You can find the source code on Github. Things you will need to have installed to run owl-cli: Graphviz for the generation of diagrams. Install in Windows (using Chocolatey): choco install graphviz Install in MacOs (using Brew): brew install graphviz Install in Ubuntu/Debian Linux: apt install graphviz Download the pre-built binary for your platform: owl-x86_64-windows-snapshot.exe owl-x86_64-apple-darwin-snapshot owl-x86_64-linux-snapshot For other platforms or architectures, please use the executable .jar file: owl-cli-snapshot.jar. This requires Java (OpenJDK) 17 or newer. Rename the binary to owl.exe (Windows) or owl (MacOs/Linux), put it in your favorite directory and add this directory to the PATH environment variable: Windows: setx /M path \"%path%;C:\\your\\path\\here\\\" MacOs/Linux: echo 'export PATH=/your/path/here:$PATH' >> ~/.bashrc; source ~/.bashrc If using the executable .jar file, the following commands will make the jar available as owl command as well. This works in MacOs and Linux. curl -L -o ~/.local/share/owl-cli/owl-cli.jar --create-dirs https://github.com/atextor/owl-cli/releases/download/snapshot/owl-cli-snapshot.jar echo 'function owl() { java -jar ~/.local/share/owl-cli/owl-cli.jar $*; }' >> ~/.bashrc source ~/.bashrc After installation, you can use the owl command: See Usage for more information. For building the executable JAR file for owl-cli, you need Java 17. We recommend installation of the GraalVM-based JDK 17 using SDKMAN!. Run the following commands: # The following commands install SDKMAN!. If you have it installed already, you can skip it. curl -sL https://get.sdkman.io | bash echo sdkman_auto_answer=true > $HOME/.sdkman/etc/config echo sdkman_auto_selfupdate=true >> $HOME/.sdkman/etc/config source $HOME/.sdkman/bin/sdkman-init.sh # Use SDKMAN! to install JDK sdk install java 17.0.8-graal sdk use java 17.0.8-graal # Build the project git clone https://github.com/atextor/owl-cli.git cd owl-cli ./gradlew This will build cli/build/libs/owl-cli-snapshot.jar, which you then can install locally: mkdir -p ~/.local/share/owl-cli cp cli/build/libs/owl-cli-snapshot.jar !$/owl-cli.jar echo 'function owl() { java -jar ~/.local/share/owl-cli/owl-cli.jar $*; }' >> ~/.bashrc source ~/.bashrc After that, you can use the owl command: See Usage for more information. For building the owl-cli native binary, GraalVM is used. As Java 15+ source features are used, a JDK 17-based GraalVM version is required. For calling GraalVM’s native-image command, the gradle build relies on the install locations as used by SDKMAN!. The following instructions assume a BASH shell. On MacOs and Linux this is the default shell; on Windows you would have to use e.g. Git Bash or WSL2. Also on Windows, you will need to install Microsoft Visual C++. Please follow the GraalVM installation instructions. Run the following commands: # The following commands install SDKMAN!. If you have it installed already, # you can skip it. # Ubuntu only: SDKMAN! installation requires zip/unzip: sudo apt-get install zip unzip # Windows only: SDKMAN! installation requires zip/unzip: choco install zip choco install unzip # Install SDKMAN! curl -sL https://get.sdkman.io | bash echo sdkman_auto_answer=true > $HOME/.sdkman/etc/config echo sdkman_auto_selfupdate=true >> $HOME/.sdkman/etc/config source $HOME/.sdkman/bin/sdkman-init.sh # Use SDKMAN! to install JDK sdk install java 17.0.8-graal sdk use java 17.0.8-graal # Use GraalVMs update tool to install the native-image command gu install native-image # Ubuntu only: Install build dependencies sudo apt-get install -y build-essential libz-dev # Build the project git clone https://github.com/atextor/owl-cli.git cd owl-cli ./gradlew nativeImage This will build cli/build/bin/owl, which you can put anywhere on your PATH.","title":"owl-cli","component":"main","version":"snapshot","name":"index","url":"/main/snapshot/index.html","titles":[{"text":"Installation","id":"installation"},{"text":"Requirements","id":"requirements"},{"text":"Download and Install owl-cli","id":"download-and-install-owl-cli"},{"text":"Building from Source","id":"building-from-source"},{"text":"Building the executable JAR from source","id":"building-executable-jar"},{"text":"Building the native image (executable binary) from source","id":"building-native-image"}]},"/main/snapshot/release-notes.html":{"text":"Changes in write command: rdf:type used as an object in a triple is not rendered as a any more. Changes in write command: Triple-quotes strings that happen to end with a quote are escaped correctly. Changes in write command: Special characters in the URIs are serialized correctly (using Jena RIOT); if characters are invalid in a local name, the full URI is printed. The longest available prefixes are used. Change in write command: Dashes, underscores and full stops in the name part of local names are not escaped any more. Both variants are valid, but reading RDF/Turtle is easier without the escapes. Bugfix in write command: Dashes in the prefix part of local names are not escaped any more Adds the infer command to perform OWL DL reasoning on an input ontology. Bugfixes in write command: Local names (curies) with escaped special characters are correctly parsed now; local names and literals are correctly escaped when writing. Adds the write command to read RDF files in multiple formats and write them out. When choosing RDF/Turtle as output format, the output is pretty-printed and formatting can be controlled. This is the first released version. It supports the diagram command to automatically generate diagrams from OWL ontologies.","title":"Release Notes","component":"main","version":"snapshot","name":"release-notes","url":"/main/snapshot/release-notes.html","titles":[{"text":"Version 1.2.5","id":"version-1-2-5"},{"text":"Version 1.2.4","id":"version-1-2-4"},{"text":"Version 1.2.3","id":"version-1-2-3"},{"text":"Version 1.2.2","id":"version-1-2-2"},{"text":"Version 1.2.1","id":"version-1-2-1"},{"text":"Version 1.2.0","id":"version-1-2-0"},{"text":"Version 1.1.0","id":"version-1-1-0"},{"text":"Version 1.0.0","id":"version-1-0-0"}]},"/main/snapshot/usage.html":{"text":"Although the package is called owl-cli, the command you invoke is called owl. You can call the built-in overview of commands and arguments via --help: Usage: Usage: owl [-v] [--help] [--version] [COMMAND] Description: Command line tool for ontology engineering Options: --help Show short help -v, --verbose Specify multiple -v options to increase verbosity, e.g. use `-v`, `-vv` or `-vvv` for more details --version Show current version Commands: ... Other than the general help, you give one argument, the command, which will take its own arguments, for example: owl diagram --format png Commands that take ontology files as an input support all formats that are supported by OWL API, notably RDF/Turtle, RDF/XML, OWL/XML and OWL Functional Syntax. The diagram command takes an OWL ontology as input and generates an automatically layouted diagram for it in the SVG or PNG format. This is implemented by mapping the ontology’s axioms into a graph description in the Graphviz language, which is passed to its dot layouting engine. Attributes such as fonts can be customized using arguments. As no standardized graphical notation for OWL exists, the diagram notation used here is described in detail on a separate page: Diagram Notation. General usage: owl diagram [options] input [output], where input can be either an ontology file or - (which means: read from standard in) and output can be either an ontology file or - (which means: write to standard out). If output is not given, the output filename is the input filename with its file extension changed, e.g. myontology.ttl → myontology.svg. If input is - and output is not given, the output is set to standard out. Table 1. diagram Command Options Option Description Default Notes --direction Diagram layout direction left_to_right Possible values: [top_to_bottom, left_to_right] --dotbinary Path to dot binary dot By default, dot is searched for in your $PATH --fontname Default font Verdana --fontsize Default font size 12 --format Output file format svg Possible values: [png, svg] --nodefontname Font for nodes Verdana --nodefontsize Font size for nodes Verdana --nodemargin The margin to render inside of nodes 0.05,0.0 See the Graphviz documentation for more information --nodeshape Node shape box See the Graphviz documentation for more information --nodestyle Node style rounded See the Graphviz documentation for more information --fgcolor Color for boxes, fonts and edges white See the Graphviz documentation for more information --bgcolor Background color for the generated diagram white See the Graphviz documentation for more information Simple invocation with default arguments: # Will create myontology.svg owl diagram myontology.ttl Invocation where the output is specified as standard out and piped to convert to create a different format: owl diagram myontology.ttl - | convert - myontology.jpg Invocation where an ontology is downloaded, some terms are filtered and then piped to owl diagram: curl http://www.ontologydesignpatterns.org/cp/owl/partof.owl | \\ grep -v 'comment|cpannotation|versionInfo' | owl diagram - partof.svg The write command takes any RDF file in RDF/Turtle, RDF/XML, RDF N-Triples or N3 format as input and writes it out in any of those formats. When writing RDF/Turtle, the formatting of the resulting output can be configured extensively, as this makes use of the turtle-formatter library. General usage: owl write [options] input [output], where input can be either an RDF file, a URL (starting with http or https) or - (which means: read from standard in) and output can be either an RDF file or - (which means: write to standard out). If output is not given, the output filename is the input filename with its file extension changed, e.g. myontology.nt → myontology.ttl. If input is - or a URL and output is not given, the output is set to standard out. Table 2. write Command Options Option Description Default Notes -o, --output Output file format turtle Possible values: [turtle, rdfxml, ntriple, n3] -i, --input Input file format turtle Possible values: [turtle, rdfxml, ntriple, n3] -p, --prefix Prefix with corresponding URI to add as @prefix when serializing Turtle. This can be given multiple times, for multiple prefixes. You can specify a well-known prefix (currently: rdf, rdfs, xsd, owl, dcterms), e.g. -prdf or --prefix=rdf or any other prefix with its url: -pfoo=http://example.com/ or --prefix=foo=http://example.com/. To set the empty prefix, use -p==http://example.com/ or --prefix==http://example.com. --prefixAlign Alignment of @prefix statements off Possible values: [left, off, right] --encoding Output encoding utf_8 Possible values: [latin1, utf_16_be, utf_16_le, utf_8, utf_8_bom] --doubleFormat Defines how double numbers are formatted 0.####E0 See here for more information on the format --endOfLine End of line style lf Possible values: [cr, crlf, lf] --indent Indent style space Possible values: [tab, space]. Note that when choosing tab, alignPredicates and alignObjects are automatically treated as false. --firstPredicateInNewLine Write first predicate in new line of block Switched off by default --writeRdfType Write rdf:type instead of a Switched off by default --useCommaByDefault Use commas for multiple objects Switched off by default --noCommaForPredicate Use no commas for multiple objects for this predicate This can be given multiple times. --useLongLiterals Use long form for literals, e.g. \"5\"^^xsd:integer instead of 5 Switched off by default --alignObjects Align objects for same predicates Switched off by default --alignPredicates Align predicates for same subjects Switched off by default --continuationIndentSize Indentation size after forced line wraps 4 --doNotInsertFinalNewline Do not insert newline at end of file Switched off by default --indentSize Indentation size in spaces 2 --keepUnusedPrefixes Keeps prefixes that are not part of any statement Switched off by default --prefixOrder Sort order for prefixes (if they appear in a model) [rdf, rdfs, xsd, owl] Add this switch multiple times, once for each prefix, in the desired order --subjectOrder Sort order for subjects by type (if they appear in a model) [rdfs:Class, owl:Ontology, owl:Class, rdf:Property, owl:ObjectProperty, owl:DatatypeProperty, owl:AnnotationProperty, owl:NamedIndividual, owl:AllDifferent, owl:Axiom] Add this switch multiple times, once for each subject type, in the desired order --predicateOrder Sort order for predicates (if they appear on a subject) [rdf:type, rdfs:label, rdfs:comment, dcterms:description] Add this switch multiple times, once for each predicate, in the desired order --objectOrder Sort order for objects [owl:NamedIndividual, owl:ObjectProperty, owl:DatatypeProperty, owl:AnnotationProperty, owl:FunctionalProperty, owl:InverseFunctionalProperty, owl:TransitiveProperty, owl:SymmetricProperty, owl:AsymmetricProperty, owl:ReflexiveProperty, owl:IrreflexiveProperty] Add this switch multiple times, once for each object type, in the desired order --anonymousNodeIdPattern Name pattern for blank node IDs _:gen0 A 0 inside the pattern will be replace with the index of the respective blank node Simple invocation with default arguments: # Read myontology.ttl and print it in formatted Turtle format owl write myontology.ttl # Read myontology.owl in RDF/XML format and print it in formatted Turtle format, writing output.ttl owl write -i rdfxml myontology.owl output.ttl # Read myontology.n3 in N3 format and print it in formatted Turtle format to stdout owl write -i n3 myontology.n3 # Read myontology.nt in N-Triples format and print it in RDF/XML format to stdout owl write -i ntriple -o rdfxml myontology.nt Read an N-Triples file and write formatted Turtle, while also configuring which prefixes should be used: owl write -prdf -powl -pxsd -p'ex=http://example.com#' -i ntriple myontology.nt Read a Turtle file and print it out, while configuring the output’s formatting and prefix order: owl write --indentSize 4 --writeRdfType --prefixOrder owl --prefixOrder rdf myontology.turtle Read a remote ontology in RDF/XML format and print it in formatted Turtle format: owl write -i rdfxml 'http://www.ontologydesignpatterns.org/cp/owl/partof.owl' The infer command takes an OWL ontology as input and performs OWL 2 DL reasoning on it. Reasoning is done using the Openllet reasoner. General usage: owl infer input [output], where input can be either an ontology file, an URL or - (which means: read from standard in) and output can be either an ontology file or - (which means: write to standard out). If input is a file and output is not given, the input file is overwritten with the inferenced result. If input is - and output is not given, the output is set to standard out. Perform reasoning on the input ontology and write results to stdout: owl infer ontology.ttl -","title":"Usage","component":"main","version":"snapshot","name":"usage","url":"/main/snapshot/usage.html","titles":[{"text":"diagram Command","id":"diagram-command"},{"text":"General Usage","id":"diagram-usage"},{"text":"Options","id":"diagram-options"},{"text":"Example Usage","id":"diagram-example-usage"},{"text":"write Command","id":"write-command"},{"text":"General Usage","id":"write-usage"},{"text":"Options","id":"write-options"},{"text":"Example Usage","id":"write-example-usage"},{"text":"infer Command","id":"infer-command"},{"text":"General Usage","id":"infer-usage"},{"text":"Example Usage","id":"infer-example-usage"}]},"/main/1.0.0/diagram-notation.html":{"text":"This page describes the graphical notation for ontology diagrams generated by owl-cli. There is no standard diagram notation for OWL, but a number of tools provide their own notation. Popular options are the Protégé plugins OWLViz and OntoGraf, as well as the graphical notation of Topbraid Composer. Most notations have a strong focus on class and instance relationships, which is well-suited for visualizing this particular kind of ontology. However, other types of axioms, in particular more complex class expressions, are usually not represented. For this reason, during the writing of the PhD thesis, a more general graphical notation for ontologies was developed. The notation by owl-cli is influenced by the following other notations for OWL ontologies: The symbols and colors for classes, properties and data types as popularized by the Protégé ontology editor and also used by Topbraid Composer. The notation from the PhD thesis (as shown on pages 43 and 44), but with less focus on Description Logics notation and instead using the expressions syntax from Protégé. Arrows from UML (hollow arrow for inheritance, solid arrow for relations). Representation of OWL class restrictions and other elements in the specification of the OMG Ontology Definition Metamodel 1.1, cf. for example Figures 14.25, 14.26 and 14.27. The symbol for disjoint unions that is used in VOWL. The notation was designed with the following goals in mind: It must be possible to represent all OWL axioms in a meaningful way. The diagrams are used mainly for visualizing in documents, not necessarily for interactively editing an ontology. The diagram should be understandable for people familiar with the Protégé editor, because it is probably the most popular ontology editor. The semantics should be unambiguous from the visual representation: For example, using a UML-like class diagram for an OWL class that includes properties in its box like class attributes in UML is not self-explanatory: Are the properties restrictions on the class (existential? universal? both?), is the class the domain of the properties? Both have very different meanings than what a UML-like representation suggests. The following sections describe the graphical notation using examples. All diagrams on this page were generated with owl-cli. Each diagram links to the RDF/Turtle file it was generated from. Table 1. Mapping Syntax for OWL Element Types OWL Element Description Logics Notation Diagram Class( ) ObjectProperty( ) DataProperty( ) AnnotationProperty( ) no notation NamedIndividual( ) Datatype( ) no notation This section is aligned to the corresponding section in the OWL 2 Specification. Table 2. Mapping Syntax for Data Ranges OWL Expression Description Logics Notation Diagram DataIntersectionOf( ) DataUnionOf( ) DataComplementOf( ) DataOneOf( ) DatatypeRestriction( int minExclusive 4 maxInclusive 10 ) no notation The outline of this section is aligned to the corresponding section in the OWL 2 Specification. Table 3. Mapping Syntax for Propositional Connectives and Enumeration of Individuals OWL Expression Description Logics Notation Diagram ObjectIntersectionOf( ) ObjectUnionOf( ) ObjectComplementOf( ) ObjectOneOf( ) Table 4. Mapping Syntax for Object Property Restrictions OWL Expression Description Logics Notation Diagram ObjectSomeValuesFrom( ) ObjectAllValuesFrom( ) ObjectHasValue( ) ObjectInverseOf( ) ObjectHasSelf( ) Table 5. Mapping Syntax for Object Property Cardinality Restrictions OWL Expression Description Logics Notation Diagram ObjectMinCardinality( ) ObjectMinCardinality( ) ObjectMaxCardinality( ) ObjectMaxCardinality( ) ObjectExactCardinality( ) ObjectExactCardinality( ) Table 6. Mapping Syntax for Data Property Restrictions OWL Expression Description Logics Notation Diagram DataSomeValuesFrom( ) DataAllValuesFrom( ) DataHasValue( ) Table 7. Mapping Syntax for Data Property Cardinality Restrictions OWL Expression Description Logics Notation Diagram DataMinCardinality( ) DataMaxCardinality( ) DataExactCardinality( ) The outline of this section is aligned to the corresponding section in the OWL 2 Specification. Table 8. Mapping Syntax for Class Expression Axioms OWL Axiom Description Logics Notation Diagram SubClassOf( ) EquivalentClasses( ) DisjointClasses( ) DisjointUnion( ) Table 9. Mapping Syntax for Object Property Axioms OWL Axiom Description Logics Notation Diagram SubObjectPropertyOf( ) ObjectPropertyChain( ) EquivalentObjectProperties( ) DisjointObjectProperties( ) InverseObjectProperties( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) FunctionalObjectProperty( ) InverseFunctionalObjectProperty( ) ReflexiveObjectProperty( ) IrreflexiveObjectProperty( ) SymmetricObjectProperty( ) AsymmetricObjectProperty( ) TransitiveObjectProperty( ) Table 10. Mapping Syntax for Data Property Axioms OWL Axiom Description Logics Notation Diagram SubDataPropertyOf( ) EquivalentDataProperties( ) DisjointDataProperties( ) DataPropertyDomain( ) DataPropertyRange( ) FunctionalDataProperty( ) Table 11. Mapping Syntax for Datatype Definitions OWL Axiom Description Logics Notation Diagram DatatypeDefinition( ) no notation Table 12. Mapping Syntax for Keys OWL Axiom Description Logics Notation Diagram HasKeys( ) no notation Table 13. Mapping Syntax for Assertions OWL Axiom Description Logics Notation Diagram SameIndividuals( ) DifferentIndividuals( ) ClassAssertion( ) ObjectPropertyAssertion( ) NegativeObjectPropertyAssertion( ) DataPropertyAssertion( ) NegativeDataPropertyAssertion( ) Rules defined in the Semantic Web Rule Language (SWRL) can be embedded in an OWL ontology. Rules are rendered as described in Human Readable Syntax, and are linked with the ontology entities they refer to. The following table shows rendering examples for the different kinds of rule atoms. Table 14. Mapping Syntax for SWRL Rules Atom Type Diagram Class Class with Expression Object Property Data Property, Data Range Data Property, Builtin","title":"OWL Diagram Notation","component":"main","version":"1.0.0","name":"diagram-notation","url":"/main/1.0.0/diagram-notation.html","titles":[{"text":"Introduction","id":"introduction"},{"text":"Element Types","id":"element-types"},{"text":"Data Ranges","id":"data-ranges"},{"text":"Class Expressions","id":"class-expressions"},{"text":"Propositional Connectives and Enumeration of Individuals","id":"propositional-connectives-and-enumeration-of-individuals"},{"text":"Object Property Restrictions","id":"object-property-restrictions"},{"text":"Object Property Cardinality Restrictions","id":"object-property-cardinality-restrictions"},{"text":"Data Property Restrictions","id":"data-property-restrictions"},{"text":"Data Property Cardinality Restrictions","id":"data-property-cardinality-restrictions"},{"text":"Axioms","id":"axioms"},{"text":"Class Expression Axioms","id":"class-expression-axioms"},{"text":"Object Property Axioms","id":"object-property-axioms"},{"text":"Data Property Axioms","id":"data-property-axioms"},{"text":"Datatype Definitions","id":"datatype-definitions"},{"text":"Keys","id":"keys"},{"text":"Assertions","id":"assertions"},{"text":"SWRL Rules","id":"swrl-rules"}]},"/main/1.0.0/index.html":{"text":"(Version 1.0.0) owl-cli is a command line tool for ontology engineering. It targets the Web Ontology Language (OWL 2) and RDF. The current main feature is the generation of automatically layed out diagrams for an OWL ontology. You can find the source code on Github. Things you will need to have installed to run owl-cli: Java (OpenJDK) 11 or newer Graphviz for the generation of diagrams. Note that this is a common package that can be installed via all popular package managers, for example apt-get, brew or rpm. Open your favorite terminal emulator and execute the following commands: curl -L -o ~/.local/share/owl-cli/owl-cli.jar --create-dirs https://github.com/atextor/owl-cli/releases/download/snapshot/owl-cli.jar echo 'function owl() { java -jar ~/.local/share/owl-cli/owl-cli.jar $*; }' >> ~/.bashrc source ~/.bashrc After installation, you can use the owl command: See Usage for more information. owl-cli uses Java 15 source features, but the build generates a Java 11-compatible JAR file. This means, for building the executable JAR file, you need Java 15. The gradle build forks jobs where it expects Java 15 to be installed in a certain place (see Building the native image (executable binary) from source for an explanation). We rely on the locations as used by SDKMAN!. Run the following commands: # The following commands install SDKMAN!. If you have it installed already, you can skip it. curl -sL https://get.sdkman.io | bash echo sdkman_auto_answer=true > $HOME/.sdkman/etc/config echo sdkman_auto_selfupdate=true >> $HOME/.sdkman/etc/config source $HOME/.sdkman/bin/sdkman-init.sh # Use SDKMAN! to install JDK sdk install java 15.0.1-open sdk use java 15.0.1-open # Build the project git clone https://github.com/atextor/owl-cli.git cd owl-cli ./gradlew This will build cli/build/libs/owl-cli-snapshot.jar, which you then can install locally: mkdir -p ~/.local/share/owl-cli cp cli/build/libs/owl-cli-snapshot.jar !$/owl-cli.jar echo 'function owl() { java -jar ~/.local/share/owl-cli/owl-cli.jar $*; }' >> ~/.bashrc source ~/.bashrc After that, you can use the owl command: See Usage for more information. The following steps have only been tested on Linux, as of now owl-cli uses Java 15 source features, but the build generates a Java 11-compatible JAR file, which is required for the generation of the native image using GraalVM, as GraalVM currently does not support Java 15 class files. This means, for building the native image, you need both Java 11 (i.e. GraalVM JDK) and Java 15. In particular, the gradle build must be executed using Java 11, while Java 15 is installed in a certain place where the build can find it. We rely on the locations as used by SDKMAN!. Run the following commands: # The following commands install SDKMAN!. If you have it installed already, you can skip it. curl -sL https://get.sdkman.io | bash echo sdkman_auto_answer=true > $HOME/.sdkman/etc/config echo sdkman_auto_selfupdate=true >> $HOME/.sdkman/etc/config source $HOME/.sdkman/bin/sdkman-init.sh # Use SDKMAN! to install JDKs sdk install java 15.0.1-open sdk install java 20.1.0.r11-grl sdk use java 20.1.0.r11-grl # Build the project git clone https://github.com/atextor/owl-cli.git cd owl-cli ./gradlew nativeImagePass2 This will build cli/build/bin/owl, which you can put anywhere on your PATH.","title":"owl-cli","component":"main","version":"1.0.0","name":"index","url":"/main/1.0.0/index.html","titles":[{"text":"Installation","id":"installation"},{"text":"Requirements","id":"requirements"},{"text":"Download and install","id":"download-and-install"},{"text":"Building from source","id":"building-from-source"},{"text":"Building the executable JAR from source","id":"building-executable-jar"},{"text":"Building the native image (executable binary) from source","id":"building-native-image"}]},"/main/1.0.0/release-notes.html":{"text":"This is the first released version. It supports the diagram command to automatically generate diagrams from OWL ontologies.","title":"Release Notes","component":"main","version":"1.0.0","name":"release-notes","url":"/main/1.0.0/release-notes.html","titles":[{"text":"Version 1.0.0","id":"version-1-0-0"}]},"/main/1.0.0/usage.html":{"text":"Although the package is called owl-cli, the command you invoke is called owl. You can call the built-in overview of commands and arguments via --help: Usage: Usage: owl [-v] [--help] [--version] [COMMAND] Description: Command line tool for ontology engineering Options: --help Show short help -v, --verbose Specify multiple -v options to increase verbosity, e.g. use `-v`, `-vv` or `-vvv` for more details --version Show current version Commands: ... Other than the general help, you give one argument, the command, which will take its own arguments, for example: owl diagram --format png Commands that take ontology files as an input support all formats that are supported by OWL API, notably RDF/Turtle, RDF/XML, OWL/XML and OWL Functional Syntax. The diagram command takes an OWL ontology as input and generates an automatically layouted diagram for it in the SVG or PNG format. This is implemented by mapping the ontology’s axioms into a graph description in the Graphviz language, which is passed to its dot layouting engine. Attributes such as fonts can be customized using arguments. As no standardized graphical notation for OWL exists, the diagram notation used here is described in detail on a separate page: Diagram Notation. General usage: owl diagram [options] input [output], where input can be either an ontology file or - (which means: read from standard in) and output can be either an ontology file or - (which means: write to standard out). If output is not given, the output filename is the input filename with its file extension changed, e.g. myontology.ttl → myontology.svg. If input is - and output is not given, the output is set to standard out. Table 1. diagram Command Options Option Description Default Notes --direction Diagram layout direction left_to_right Possible Values: [top_to_bottom, left_to_right] --dotbinary Path to dot binary dot By default, dot is searched for in your $PATH --fontname Default font Verdana --fontsize Default font size 12 --format Output file format svg Possible Values: [png, svg] --nodefontname Font for nodes Verdana --nodefontsize Font size for nodes Verdana --nodemargin The margin to render inside of nodes 0.05,0.0 See the Graphviz documentation for more information --nodeshape Node shape box See the Graphviz documentation for more information --nodestyle Node style rounded See the Graphviz documentation for more information Simple invocation with default arguments: # Will create myontology.svg owl diagram myontology.ttl Invocation where the output is specified as standard out and piped to convert to create a different format: owl diagram myontology.ttl - | convert - myontology.jpg Invocation where an ontology is downloaded, some terms are filtered and then piped to owl diagram: curl http://www.ontologydesignpatterns.org/cp/owl/partof.owl | \\ grep -v 'comment|cpannotation|versionInfo' | owl diagram - partof.svg","title":"Usage","component":"main","version":"1.0.0","name":"usage","url":"/main/1.0.0/usage.html","titles":[{"text":"diagram Command","id":"diagram-command"},{"text":"General Usage","id":"diagram-usage"},{"text":"Options","id":"diagram-options"},{"text":"Example Usage","id":"diagram-example-usage"}]},"/main/1.1.0/diagram-notation.html":{"text":"This page describes the graphical notation for ontology diagrams generated by owl-cli. There is no standard diagram notation for OWL, but a number of tools provide their own notation. Popular options are the Protégé plugins OWLViz and OntoGraf, as well as the graphical notation of Topbraid Composer. Most notations have a strong focus on class and instance relationships, which is well-suited for visualizing this particular kind of ontology. However, other types of axioms, in particular more complex class expressions, are usually not represented. For this reason, during the writing of the PhD thesis, a more general graphical notation for ontologies was developed. The notation by owl-cli is influenced by the following other notations for OWL ontologies: The symbols and colors for classes, properties and data types as popularized by the Protégé ontology editor and also used by Topbraid Composer. The notation from the PhD thesis (as shown on pages 43 and 44), but with less focus on Description Logics notation and instead using the expressions syntax from Protégé. Arrows from UML (hollow arrow for inheritance, solid arrow for relations). Representation of OWL class restrictions and other elements in the specification of the OMG Ontology Definition Metamodel 1.1, cf. for example Figures 14.25, 14.26 and 14.27. The symbol for disjoint unions that is used in VOWL. The notation was designed with the following goals in mind: It must be possible to represent all OWL axioms in a meaningful way. The diagrams are used mainly for visualizing in documents, not necessarily for interactively editing an ontology. The diagram should be understandable for people familiar with the Protégé editor, because it is probably the most popular ontology editor. The semantics should be unambiguous from the visual representation: For example, using a UML-like class diagram for an OWL class that includes properties in its box like class attributes in UML is not self-explanatory: Are the properties restrictions on the class (existential? universal? both?), is the class the domain of the properties? Both have very different meanings than what a UML-like representation suggests. The following sections describe the graphical notation using examples. All diagrams on this page were generated with owl-cli. Each diagram links to the RDF/Turtle file it was generated from. Table 1. Mapping Syntax for OWL Element Types OWL Element Description Logics Notation Diagram Class( ) ObjectProperty( ) DataProperty( ) AnnotationProperty( ) no notation NamedIndividual( ) Datatype( ) no notation This section is aligned to the corresponding section in the OWL 2 Specification. Table 2. Mapping Syntax for Data Ranges OWL Expression Description Logics Notation Diagram DataIntersectionOf( ) DataUnionOf( ) DataComplementOf( ) DataOneOf( ) DatatypeRestriction( int minExclusive 4 maxInclusive 10 ) no notation The outline of this section is aligned to the corresponding section in the OWL 2 Specification. Table 3. Mapping Syntax for Propositional Connectives and Enumeration of Individuals OWL Expression Description Logics Notation Diagram ObjectIntersectionOf( ) ObjectUnionOf( ) ObjectComplementOf( ) ObjectOneOf( ) Table 4. Mapping Syntax for Object Property Restrictions OWL Expression Description Logics Notation Diagram ObjectSomeValuesFrom( ) ObjectAllValuesFrom( ) ObjectHasValue( ) ObjectInverseOf( ) ObjectHasSelf( ) Table 5. Mapping Syntax for Object Property Cardinality Restrictions OWL Expression Description Logics Notation Diagram ObjectMinCardinality( ) ObjectMinCardinality( ) ObjectMaxCardinality( ) ObjectMaxCardinality( ) ObjectExactCardinality( ) ObjectExactCardinality( ) Table 6. Mapping Syntax for Data Property Restrictions OWL Expression Description Logics Notation Diagram DataSomeValuesFrom( ) DataAllValuesFrom( ) DataHasValue( ) Table 7. Mapping Syntax for Data Property Cardinality Restrictions OWL Expression Description Logics Notation Diagram DataMinCardinality( ) DataMaxCardinality( ) DataExactCardinality( ) The outline of this section is aligned to the corresponding section in the OWL 2 Specification. Table 8. Mapping Syntax for Class Expression Axioms OWL Axiom Description Logics Notation Diagram SubClassOf( ) EquivalentClasses( ) DisjointClasses( ) DisjointUnion( ) Table 9. Mapping Syntax for Object Property Axioms OWL Axiom Description Logics Notation Diagram SubObjectPropertyOf( ) ObjectPropertyChain( ) EquivalentObjectProperties( ) DisjointObjectProperties( ) InverseObjectProperties( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) FunctionalObjectProperty( ) InverseFunctionalObjectProperty( ) ReflexiveObjectProperty( ) IrreflexiveObjectProperty( ) SymmetricObjectProperty( ) AsymmetricObjectProperty( ) TransitiveObjectProperty( ) Table 10. Mapping Syntax for Data Property Axioms OWL Axiom Description Logics Notation Diagram SubDataPropertyOf( ) EquivalentDataProperties( ) DisjointDataProperties( ) DataPropertyDomain( ) DataPropertyRange( ) FunctionalDataProperty( ) Table 11. Mapping Syntax for Datatype Definitions OWL Axiom Description Logics Notation Diagram DatatypeDefinition( ) no notation Table 12. Mapping Syntax for Keys OWL Axiom Description Logics Notation Diagram HasKeys( ) no notation Table 13. Mapping Syntax for Assertions OWL Axiom Description Logics Notation Diagram SameIndividuals( ) DifferentIndividuals( ) ClassAssertion( ) ObjectPropertyAssertion( ) NegativeObjectPropertyAssertion( ) DataPropertyAssertion( ) NegativeDataPropertyAssertion( ) Rules defined in the Semantic Web Rule Language (SWRL) can be embedded in an OWL ontology. Rules are rendered as described in Human Readable Syntax, and are linked with the ontology entities they refer to. The following table shows rendering examples for the different kinds of rule atoms. Table 14. Mapping Syntax for SWRL Rules Atom Type Diagram Class Class with Expression Object Property Data Property, Data Range Data Property, Builtin","title":"OWL Diagram Notation","component":"main","version":"1.1.0","name":"diagram-notation","url":"/main/1.1.0/diagram-notation.html","titles":[{"text":"Introduction","id":"introduction"},{"text":"Element Types","id":"element-types"},{"text":"Data Ranges","id":"data-ranges"},{"text":"Class Expressions","id":"class-expressions"},{"text":"Propositional Connectives and Enumeration of Individuals","id":"propositional-connectives-and-enumeration-of-individuals"},{"text":"Object Property Restrictions","id":"object-property-restrictions"},{"text":"Object Property Cardinality Restrictions","id":"object-property-cardinality-restrictions"},{"text":"Data Property Restrictions","id":"data-property-restrictions"},{"text":"Data Property Cardinality Restrictions","id":"data-property-cardinality-restrictions"},{"text":"Axioms","id":"axioms"},{"text":"Class Expression Axioms","id":"class-expression-axioms"},{"text":"Object Property Axioms","id":"object-property-axioms"},{"text":"Data Property Axioms","id":"data-property-axioms"},{"text":"Datatype Definitions","id":"datatype-definitions"},{"text":"Keys","id":"keys"},{"text":"Assertions","id":"assertions"},{"text":"SWRL Rules","id":"swrl-rules"}]},"/main/1.1.0/index.html":{"text":"(Version 1.1.0) owl-cli is a command line tool for ontology engineering. It targets the Web Ontology Language (OWL 2) and RDF. You can generate a diagram for an OWL ontology with the diagram command read any RDF document in RDF/Turtle, RDF/XML, RDF N-Triples or N3 format and write it in configurable, pretty-printed RDF/Turtle or one of the other formats using the write command You can find the source code on Github. Things you will need to have installed to run owl-cli: Graphviz for the generation of diagrams. Install in Windows (using Chocolatey): choco install graphviz Install in MacOs (using Brew): brew install graphviz Install in Ubuntu/Debian Linux: apt install graphviz Download the pre-built binary for your platform: owl-x86_64-windows-1.1.0.exe owl-x86_64-apple-darwin-1.1.0 owl-x86_64-linux-1.1.0 For other platforms or architectures, please use the executable .jar file: owl-cli-1.1.0.jar. This requires Java (OpenJDK) 17 or newer. Rename the binary to owl.exe (Windows) or owl (MacOs/Linux), put it in your favorite directory and add this directory to the PATH environment variable: Windows: setx /M path \"%path%;C:\\your\\path\\here\\\" MacOs/Linux: echo 'export PATH=/your/path/here:$PATH' >> ~/.bashrc; source ~/.bashrc If using the executable .jar file, the following commands will make the jar available as owl command as well. This works in MacOs and Linux. curl -L -o ~/.local/share/owl-cli/owl-cli.jar --create-dirs https://github.com/atextor/owl-cli/releases/download/{release-version}/owl-cli-{release-version}.jar echo 'function owl() { java -jar ~/.local/share/owl-cli/owl-cli.jar $*; }' >> ~/.bashrc source ~/.bashrc After installation, you can use the owl command: See Usage for more information. For building the executable JAR file for owl-cli, you need Java 17. We recommend installation of the GraalVM-based JDK 17 using SDKMAN!. Run the following commands: # The following commands install SDKMAN!. If you have it installed already, you can skip it. curl -sL https://get.sdkman.io | bash echo sdkman_auto_answer=true > $HOME/.sdkman/etc/config echo sdkman_auto_selfupdate=true >> $HOME/.sdkman/etc/config source $HOME/.sdkman/bin/sdkman-init.sh # Use SDKMAN! to install JDK sdk install java 21.3.0.r17-grl sdk use java 21.3.0.r17-grl # Build the project git clone https://github.com/atextor/owl-cli.git cd owl-cli ./gradlew This will build cli/build/libs/owl-cli-snapshot.jar, which you then can install locally: mkdir -p ~/.local/share/owl-cli cp cli/build/libs/owl-cli-snapshot.jar !$/owl-cli.jar echo 'function owl() { java -jar ~/.local/share/owl-cli/owl-cli.jar $*; }' >> ~/.bashrc source ~/.bashrc After that, you can use the owl command: See Usage for more information. For building the owl-cli native binary, GraalVM is used. As Java 15+ source features are used, a JDK 17-based GraalVM version is required. For calling GraalVM’s native-image command, the gradle build relies on the install locations as used by SDKMAN!. The following instructions assume a BASH shell. On MacOs and Linux this is the default shell; on Windows you would have to use e.g. Git Bash or WSL2. Also on Windows, you will need to install Microsoft Visual C++. Please follow the GraalVM installation instructions. Run the following commands: # The following commands install SDKMAN!. If you have it installed already, # you can skip it. # Ubuntu only: SDKMAN! installation requires zip/unzip: sudo apt-get install zip unzip # Windows only: SDKMAN! installation requires zip/unzip: choco install zip choco install unzip # Install SDKMAN! curl -sL https://get.sdkman.io | bash echo sdkman_auto_answer=true > $HOME/.sdkman/etc/config echo sdkman_auto_selfupdate=true >> $HOME/.sdkman/etc/config source $HOME/.sdkman/bin/sdkman-init.sh # Use SDKMAN! to install JDK sdk install java 21.3.0.r17-grl sdk use java 21.2.0.r17-grl # Use GraalVMs update tool to install the native-image command gu install native-image # Ubuntu only: Install build dependencies sudo apt-get install -y build-essential libz-dev # Build the project git clone https://github.com/atextor/owl-cli.git cd owl-cli ./gradlew nativeImage This will build cli/build/bin/owl, which you can put anywhere on your PATH.","title":"owl-cli","component":"main","version":"1.1.0","name":"index","url":"/main/1.1.0/index.html","titles":[{"text":"Installation","id":"installation"},{"text":"Requirements","id":"requirements"},{"text":"Download and Install owl-cli","id":"download-and-install-owl-cli"},{"text":"Building from Source","id":"building-from-source"},{"text":"Building the executable JAR from source","id":"building-executable-jar"},{"text":"Building the native image (executable binary) from source","id":"building-native-image"}]},"/main/1.1.0/release-notes.html":{"text":"Adds the write command to read RDF files in multiple formats and write them out. When choosing RDF/Turtle as output format, the output is pretty-printed and formatting can be controlled. This is the first released version. It supports the diagram command to automatically generate diagrams from OWL ontologies.","title":"Release Notes","component":"main","version":"1.1.0","name":"release-notes","url":"/main/1.1.0/release-notes.html","titles":[{"text":"Version 1.1.0","id":"version-1-1-0"},{"text":"Version 1.0.0","id":"version-1-0-0"}]},"/main/1.1.0/usage.html":{"text":"Although the package is called owl-cli, the command you invoke is called owl. You can call the built-in overview of commands and arguments via --help: Usage: Usage: owl [-v] [--help] [--version] [COMMAND] Description: Command line tool for ontology engineering Options: --help Show short help -v, --verbose Specify multiple -v options to increase verbosity, e.g. use `-v`, `-vv` or `-vvv` for more details --version Show current version Commands: ... Other than the general help, you give one argument, the command, which will take its own arguments, for example: owl diagram --format png Commands that take ontology files as an input support all formats that are supported by OWL API, notably RDF/Turtle, RDF/XML, OWL/XML and OWL Functional Syntax. The diagram command takes an OWL ontology as input and generates an automatically layouted diagram for it in the SVG or PNG format. This is implemented by mapping the ontology’s axioms into a graph description in the Graphviz language, which is passed to its dot layouting engine. Attributes such as fonts can be customized using arguments. As no standardized graphical notation for OWL exists, the diagram notation used here is described in detail on a separate page: Diagram Notation. General usage: owl diagram [options] input [output], where input can be either an ontology file or - (which means: read from standard in) and output can be either an ontology file or - (which means: write to standard out). If output is not given, the output filename is the input filename with its file extension changed, e.g. myontology.ttl → myontology.svg. If input is - and output is not given, the output is set to standard out. Table 1. diagram Command Options Option Description Default Notes --direction Diagram layout direction left_to_right Possible values: [top_to_bottom, left_to_right] --dotbinary Path to dot binary dot By default, dot is searched for in your $PATH --fontname Default font Verdana --fontsize Default font size 12 --format Output file format svg Possible values: [png, svg] --nodefontname Font for nodes Verdana --nodefontsize Font size for nodes Verdana --nodemargin The margin to render inside of nodes 0.05,0.0 See the Graphviz documentation for more information --nodeshape Node shape box See the Graphviz documentation for more information --nodestyle Node style rounded See the Graphviz documentation for more information --fgcolor Color for boxes, fonts and edges white See the Graphviz documentation for more information --bgcolor Background color for the generated diagram white See the Graphviz documentation for more information Simple invocation with default arguments: # Will create myontology.svg owl diagram myontology.ttl Invocation where the output is specified as standard out and piped to convert to create a different format: owl diagram myontology.ttl - | convert - myontology.jpg Invocation where an ontology is downloaded, some terms are filtered and then piped to owl diagram: curl http://www.ontologydesignpatterns.org/cp/owl/partof.owl | \\ grep -v 'comment|cpannotation|versionInfo' | owl diagram - partof.svg The write command takes any RDF file in RDF/Turtle, RDF/XML, RDF N-Triples or N3 format as input and writes it out in any of those formats. When writing RDF/Turtle, the formatting of the resulting output can be configured extensively, as this makes use of the turtle-formatter library. General usage: owl write [options] input [output], where input can be either an RDF file, a URL (starting with http or https) or - (which means: read from standard in) and output can be either an RDF file or - (which means: write to standard out). If output is not given, the output filename is the input filename with its file extension changed, e.g. myontology.nt → myontology.ttl. If input is - or a URL and output is not given, the output is set to standard out. Table 2. write Command Options Option Description Default Notes -o, --output Output file format turtle Possible values: [turtle, rdfxml, ntriple, n3] -i, --input Input file format turtle Possible values: [turtle, rdfxml, ntriple, n3] -p, --prefix Prefix with corresponding URI to add as @prefix when serializing Turtle. This can be given multiple times, for multiple prefixes. You can specify a well-known prefix (currently: rdf, rdfs, xsd, owl, dcterms), e.g. -prdf or --prefix=rdf or any other prefix with its url: -pfoo=http://example.com/ or --prefix=foo=http://example.com/. To set the empty prefix, use -p==http://example.com/ or --prefix==http://example.com. --prefixAlign Alignment of @prefix statements off Possible values: [left, off, right] --encoding Output encoding utf_8 Possible values: [latin1, utf_16_be, utf_16_le, utf_8, utf_8_bom] --doubleFormat Defines how double numbers are formatted 0.####E0 See here for more information on the format --endOfLine End of line style lf Possible values: [cr, crlf, lf] --indent Indent style space Possible values: [tab, space]. Note that when choosing tab, alignPredicates and alignObjects are automatically treated as false. --firstPredicateInNewLine Write first predicate in new line of block Switched off by default --writeRdfType Write rdf:type instead of a Switched off by default --useCommaByDefault Use commas for multiple objects Switched off by default --noCommaForPredicate Use no commas for multiple objects for this predicate This can be given multiple times. --useLongLiterals Use long form for literals, e.g. \"5\"^^xsd:integer instead of 5 Switched off by default --alignObjects Align objects for same predicates Switched off by default --alignPredicates Align predicates for same subjects Switched off by default --continuationIndentSize Indentation size after forced line wraps 4 --doNotInsertFinalNewline Do not insert newline at end of file Switched off by default --indentSize Indentation size in spaces 2 --keepUnusedPrefixes Keeps prefixes that are not part of any statement Switched off by default --prefixOrder Sort order for prefixes (if they appear in a model) [rdf, rdfs, xsd, owl] Add this switch multiple times, once for each prefix, in the desired order --subjectOrder Sort order for subjects by type (if they appear in a model) [rdfs:Class, owl:Ontology, owl:Class, rdf:Property, owl:ObjectProperty, owl:DatatypeProperty, owl:AnnotationProperty, owl:NamedIndividual, owl:AllDifferent, owl:Axiom] Add this switch multiple times, once for each subject type, in the desired order --predicateOrder Sort order for predicates (if they appear on a subject) [rdf:type, rdfs:label, rdfs:comment, dcterms:description] Add this switch multiple times, once for each predicate, in the desired order --objectOrder Sort order for objects [owl:NamedIndividual, owl:ObjectProperty, owl:DatatypeProperty, owl:AnnotationProperty, owl:FunctionalProperty, owl:InverseFunctionalProperty, owl:TransitiveProperty, owl:SymmetricProperty, owl:AsymmetricProperty, owl:ReflexiveProperty, owl:IrreflexiveProperty] Add this switch multiple times, once for each object type, in the desired order --anonymousNodeIdPattern Name pattern for blank node IDs _:gen0 A 0 inside the pattern will be replace with the index of the respective blank node Simple invocation with default arguments: # Read myontology.ttl and print it in formatted Turtle format owl write myontology.ttl # Read myontology.owl in RDF/XML format and print it in formatted Turtle format, writing output.ttl owl write -i rdfxml myontology.owl output.ttl # Read myontology.n3 in N3 format and print it in formatted Turtle format to stdout owl write -i n3 myontology.n3 # Read myontology.nt in N-Triples format and print it in RDF/XML format to stdout owl write -i ntriple -o rdfxml myontology.nt Read an N-Triples file and write formatted Turtle, while also configuring which prefixes should be used: owl write -prdf -powl -pxsd -p'ex=http://example.com#' -i ntriple myontology.nt Read a Turtle file and print it out, while configuring the output’s formatting and prefix order: owl write --indentSize 4 --writeRdfType --prefixOrder owl --prefixOrder rdf myontology.turtle Read a remote ontology in RDF/XML format and print it in formatted Turtle format: owl write -i rdfxml 'http://www.ontologydesignpatterns.org/cp/owl/partof.owl'","title":"Usage","component":"main","version":"1.1.0","name":"usage","url":"/main/1.1.0/usage.html","titles":[{"text":"diagram Command","id":"diagram-command"},{"text":"General Usage","id":"diagram-usage"},{"text":"Options","id":"diagram-options"},{"text":"Example Usage","id":"diagram-example-usage"},{"text":"write Command","id":"write-command"},{"text":"General Usage","id":"write-usage"},{"text":"Options","id":"write-options"},{"text":"Example Usage","id":"write-example-usage"}]},"/main/1.2.0/diagram-notation.html":{"text":"This page describes the graphical notation for ontology diagrams generated by owl-cli. There is no standard diagram notation for OWL, but a number of tools provide their own notation. Popular options are the Protégé plugins OWLViz and OntoGraf, as well as the graphical notation of Topbraid Composer. Most notations have a strong focus on class and instance relationships, which is well-suited for visualizing this particular kind of ontology. However, other types of axioms, in particular more complex class expressions, are usually not represented. For this reason, during the writing of the PhD thesis, a more general graphical notation for ontologies was developed. The notation by owl-cli is influenced by the following other notations for OWL ontologies: The symbols and colors for classes, properties and data types as popularized by the Protégé ontology editor and also used by Topbraid Composer. The notation from the PhD thesis (as shown on pages 43 and 44), but with less focus on Description Logics notation and instead using the expressions syntax from Protégé. Arrows from UML (hollow arrow for inheritance, solid arrow for relations). Representation of OWL class restrictions and other elements in the specification of the OMG Ontology Definition Metamodel 1.1, cf. for example Figures 14.25, 14.26 and 14.27. The symbol for disjoint unions that is used in VOWL. The notation was designed with the following goals in mind: It must be possible to represent all OWL axioms in a meaningful way. The diagrams are used mainly for visualizing in documents, not necessarily for interactively editing an ontology. The diagram should be understandable for people familiar with the Protégé editor, because it is probably the most popular ontology editor. The semantics should be unambiguous from the visual representation: For example, using a UML-like class diagram for an OWL class that includes properties in its box like class attributes in UML is not self-explanatory: Are the properties restrictions on the class (existential? universal? both?), is the class the domain of the properties? Both have very different meanings than what a UML-like representation suggests. The following sections describe the graphical notation using examples. All diagrams on this page were generated with owl-cli. Each diagram links to the RDF/Turtle file it was generated from. Table 1. Mapping Syntax for OWL Element Types OWL Element Description Logics Notation Diagram Class( ) ObjectProperty( ) DataProperty( ) AnnotationProperty( ) no notation NamedIndividual( ) Datatype( ) no notation This section is aligned to the corresponding section in the OWL 2 Specification. Table 2. Mapping Syntax for Data Ranges OWL Expression Description Logics Notation Diagram DataIntersectionOf( ) DataUnionOf( ) DataComplementOf( ) DataOneOf( ) DatatypeRestriction( int minExclusive 4 maxInclusive 10 ) no notation The outline of this section is aligned to the corresponding section in the OWL 2 Specification. Table 3. Mapping Syntax for Propositional Connectives and Enumeration of Individuals OWL Expression Description Logics Notation Diagram ObjectIntersectionOf( ) ObjectUnionOf( ) ObjectComplementOf( ) ObjectOneOf( ) Table 4. Mapping Syntax for Object Property Restrictions OWL Expression Description Logics Notation Diagram ObjectSomeValuesFrom( ) ObjectAllValuesFrom( ) ObjectHasValue( ) ObjectInverseOf( ) ObjectHasSelf( ) Table 5. Mapping Syntax for Object Property Cardinality Restrictions OWL Expression Description Logics Notation Diagram ObjectMinCardinality( ) ObjectMinCardinality( ) ObjectMaxCardinality( ) ObjectMaxCardinality( ) ObjectExactCardinality( ) ObjectExactCardinality( ) Table 6. Mapping Syntax for Data Property Restrictions OWL Expression Description Logics Notation Diagram DataSomeValuesFrom( ) DataAllValuesFrom( ) DataHasValue( ) Table 7. Mapping Syntax for Data Property Cardinality Restrictions OWL Expression Description Logics Notation Diagram DataMinCardinality( ) DataMaxCardinality( ) DataExactCardinality( ) The outline of this section is aligned to the corresponding section in the OWL 2 Specification. Table 8. Mapping Syntax for Class Expression Axioms OWL Axiom Description Logics Notation Diagram SubClassOf( ) EquivalentClasses( ) DisjointClasses( ) DisjointUnion( ) Table 9. Mapping Syntax for Object Property Axioms OWL Axiom Description Logics Notation Diagram SubObjectPropertyOf( ) ObjectPropertyChain( ) EquivalentObjectProperties( ) DisjointObjectProperties( ) InverseObjectProperties( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) FunctionalObjectProperty( ) InverseFunctionalObjectProperty( ) ReflexiveObjectProperty( ) IrreflexiveObjectProperty( ) SymmetricObjectProperty( ) AsymmetricObjectProperty( ) TransitiveObjectProperty( ) Table 10. Mapping Syntax for Data Property Axioms OWL Axiom Description Logics Notation Diagram SubDataPropertyOf( ) EquivalentDataProperties( ) DisjointDataProperties( ) DataPropertyDomain( ) DataPropertyRange( ) FunctionalDataProperty( ) Table 11. Mapping Syntax for Datatype Definitions OWL Axiom Description Logics Notation Diagram DatatypeDefinition( ) no notation Table 12. Mapping Syntax for Keys OWL Axiom Description Logics Notation Diagram HasKeys( ) no notation Table 13. Mapping Syntax for Assertions OWL Axiom Description Logics Notation Diagram SameIndividuals( ) DifferentIndividuals( ) ClassAssertion( ) ObjectPropertyAssertion( ) NegativeObjectPropertyAssertion( ) DataPropertyAssertion( ) NegativeDataPropertyAssertion( ) Rules defined in the Semantic Web Rule Language (SWRL) can be embedded in an OWL ontology. Rules are rendered as described in Human Readable Syntax, and are linked with the ontology entities they refer to. The following table shows rendering examples for the different kinds of rule atoms. Table 14. Mapping Syntax for SWRL Rules Atom Type Diagram Class Class with Expression Object Property Data Property, Data Range Data Property, Builtin","title":"OWL Diagram Notation","component":"main","version":"1.2.0","name":"diagram-notation","url":"/main/1.2.0/diagram-notation.html","titles":[{"text":"Introduction","id":"introduction"},{"text":"Element Types","id":"element-types"},{"text":"Data Ranges","id":"data-ranges"},{"text":"Class Expressions","id":"class-expressions"},{"text":"Propositional Connectives and Enumeration of Individuals","id":"propositional-connectives-and-enumeration-of-individuals"},{"text":"Object Property Restrictions","id":"object-property-restrictions"},{"text":"Object Property Cardinality Restrictions","id":"object-property-cardinality-restrictions"},{"text":"Data Property Restrictions","id":"data-property-restrictions"},{"text":"Data Property Cardinality Restrictions","id":"data-property-cardinality-restrictions"},{"text":"Axioms","id":"axioms"},{"text":"Class Expression Axioms","id":"class-expression-axioms"},{"text":"Object Property Axioms","id":"object-property-axioms"},{"text":"Data Property Axioms","id":"data-property-axioms"},{"text":"Datatype Definitions","id":"datatype-definitions"},{"text":"Keys","id":"keys"},{"text":"Assertions","id":"assertions"},{"text":"SWRL Rules","id":"swrl-rules"}]},"/main/1.2.0/index.html":{"text":"(Version 1.2.0) owl-cli is a command line tool for ontology engineering. It targets the Web Ontology Language (OWL 2) and RDF. You can generate a diagram for an OWL ontology with the diagram command read any RDF document in RDF/Turtle, RDF/XML, RDF N-Triples or N3 format and write it in configurable, pretty-printed RDF/Turtle or one of the other formats using the write command perform OWL DL reasoning on an input ontology using the infer command You can find the source code on Github. Things you will need to have installed to run owl-cli: Graphviz for the generation of diagrams. Install in Windows (using Chocolatey): choco install graphviz Install in MacOs (using Brew): brew install graphviz Install in Ubuntu/Debian Linux: apt install graphviz Download the pre-built binary for your platform: owl-x86_64-windows-1.2.0.exe owl-x86_64-apple-darwin-1.2.0 owl-x86_64-linux-1.2.0 For other platforms or architectures, please use the executable .jar file: owl-cli-1.2.0.jar. This requires Java (OpenJDK) 17 or newer. Rename the binary to owl.exe (Windows) or owl (MacOs/Linux), put it in your favorite directory and add this directory to the PATH environment variable: Windows: setx /M path \"%path%;C:\\your\\path\\here\\\" MacOs/Linux: echo 'export PATH=/your/path/here:$PATH' >> ~/.bashrc; source ~/.bashrc If using the executable .jar file, the following commands will make the jar available as owl command as well. This works in MacOs and Linux. curl -L -o ~/.local/share/owl-cli/owl-cli.jar --create-dirs https://github.com/atextor/owl-cli/releases/download/v1.2.0/owl-cli-1.2.0.jar echo 'function owl() { java -jar ~/.local/share/owl-cli/owl-cli.jar $*; }' >> ~/.bashrc source ~/.bashrc After installation, you can use the owl command: See Usage for more information. For building the executable JAR file for owl-cli, you need Java 17. We recommend installation of the GraalVM-based JDK 17 using SDKMAN!. Run the following commands: # The following commands install SDKMAN!. If you have it installed already, you can skip it. curl -sL https://get.sdkman.io | bash echo sdkman_auto_answer=true > $HOME/.sdkman/etc/config echo sdkman_auto_selfupdate=true >> $HOME/.sdkman/etc/config source $HOME/.sdkman/bin/sdkman-init.sh # Use SDKMAN! to install JDK sdk install java 21.3.0.r17-grl sdk use java 21.3.0.r17-grl # Build the project git clone https://github.com/atextor/owl-cli.git cd owl-cli ./gradlew This will build cli/build/libs/owl-cli-snapshot.jar, which you then can install locally: mkdir -p ~/.local/share/owl-cli cp cli/build/libs/owl-cli-snapshot.jar !$/owl-cli.jar echo 'function owl() { java -jar ~/.local/share/owl-cli/owl-cli.jar $*; }' >> ~/.bashrc source ~/.bashrc After that, you can use the owl command: See Usage for more information. For building the owl-cli native binary, GraalVM is used. As Java 15+ source features are used, a JDK 17-based GraalVM version is required. For calling GraalVM’s native-image command, the gradle build relies on the install locations as used by SDKMAN!. The following instructions assume a BASH shell. On MacOs and Linux this is the default shell; on Windows you would have to use e.g. Git Bash or WSL2. Also on Windows, you will need to install Microsoft Visual C++. Please follow the GraalVM installation instructions. Run the following commands: # The following commands install SDKMAN!. If you have it installed already, # you can skip it. # Ubuntu only: SDKMAN! installation requires zip/unzip: sudo apt-get install zip unzip # Windows only: SDKMAN! installation requires zip/unzip: choco install zip choco install unzip # Install SDKMAN! curl -sL https://get.sdkman.io | bash echo sdkman_auto_answer=true > $HOME/.sdkman/etc/config echo sdkman_auto_selfupdate=true >> $HOME/.sdkman/etc/config source $HOME/.sdkman/bin/sdkman-init.sh # Use SDKMAN! to install JDK sdk install java 21.3.0.r17-grl sdk use java 21.2.0.r17-grl # Use GraalVMs update tool to install the native-image command gu install native-image # Ubuntu only: Install build dependencies sudo apt-get install -y build-essential libz-dev # Build the project git clone https://github.com/atextor/owl-cli.git cd owl-cli ./gradlew nativeImage This will build cli/build/bin/owl, which you can put anywhere on your PATH.","title":"owl-cli","component":"main","version":"1.2.0","name":"index","url":"/main/1.2.0/index.html","titles":[{"text":"Installation","id":"installation"},{"text":"Requirements","id":"requirements"},{"text":"Download and Install owl-cli","id":"download-and-install-owl-cli"},{"text":"Building from Source","id":"building-from-source"},{"text":"Building the executable JAR from source","id":"building-executable-jar"},{"text":"Building the native image (executable binary) from source","id":"building-native-image"}]},"/main/1.2.0/release-notes.html":{"text":"Adds the infer command to perform OWL DL reasoning on an input ontology. Bugfixes in write command: Local names (curies) with escaped special characters are correctly parsed now; local names and literals are correctly escaped when writing. Adds the write command to read RDF files in multiple formats and write them out. When choosing RDF/Turtle as output format, the output is pretty-printed and formatting can be controlled. This is the first released version. It supports the diagram command to automatically generate diagrams from OWL ontologies.","title":"Release Notes","component":"main","version":"1.2.0","name":"release-notes","url":"/main/1.2.0/release-notes.html","titles":[{"text":"Version 1.2.0","id":"version-1-2-0"},{"text":"Version 1.1.0","id":"version-1-1-0"},{"text":"Version 1.0.0","id":"version-1-0-0"}]},"/main/1.2.0/usage.html":{"text":"Although the package is called owl-cli, the command you invoke is called owl. You can call the built-in overview of commands and arguments via --help: Usage: Usage: owl [-v] [--help] [--version] [COMMAND] Description: Command line tool for ontology engineering Options: --help Show short help -v, --verbose Specify multiple -v options to increase verbosity, e.g. use `-v`, `-vv` or `-vvv` for more details --version Show current version Commands: ... Other than the general help, you give one argument, the command, which will take its own arguments, for example: owl diagram --format png Commands that take ontology files as an input support all formats that are supported by OWL API, notably RDF/Turtle, RDF/XML, OWL/XML and OWL Functional Syntax. The diagram command takes an OWL ontology as input and generates an automatically layouted diagram for it in the SVG or PNG format. This is implemented by mapping the ontology’s axioms into a graph description in the Graphviz language, which is passed to its dot layouting engine. Attributes such as fonts can be customized using arguments. As no standardized graphical notation for OWL exists, the diagram notation used here is described in detail on a separate page: Diagram Notation. General usage: owl diagram [options] input [output], where input can be either an ontology file or - (which means: read from standard in) and output can be either an ontology file or - (which means: write to standard out). If output is not given, the output filename is the input filename with its file extension changed, e.g. myontology.ttl → myontology.svg. If input is - and output is not given, the output is set to standard out. Table 1. diagram Command Options Option Description Default Notes --direction Diagram layout direction left_to_right Possible values: [top_to_bottom, left_to_right] --dotbinary Path to dot binary dot By default, dot is searched for in your $PATH --fontname Default font Verdana --fontsize Default font size 12 --format Output file format svg Possible values: [png, svg] --nodefontname Font for nodes Verdana --nodefontsize Font size for nodes Verdana --nodemargin The margin to render inside of nodes 0.05,0.0 See the Graphviz documentation for more information --nodeshape Node shape box See the Graphviz documentation for more information --nodestyle Node style rounded See the Graphviz documentation for more information --fgcolor Color for boxes, fonts and edges white See the Graphviz documentation for more information --bgcolor Background color for the generated diagram white See the Graphviz documentation for more information Simple invocation with default arguments: # Will create myontology.svg owl diagram myontology.ttl Invocation where the output is specified as standard out and piped to convert to create a different format: owl diagram myontology.ttl - | convert - myontology.jpg Invocation where an ontology is downloaded, some terms are filtered and then piped to owl diagram: curl http://www.ontologydesignpatterns.org/cp/owl/partof.owl | \\ grep -v 'comment|cpannotation|versionInfo' | owl diagram - partof.svg The write command takes any RDF file in RDF/Turtle, RDF/XML, RDF N-Triples or N3 format as input and writes it out in any of those formats. When writing RDF/Turtle, the formatting of the resulting output can be configured extensively, as this makes use of the turtle-formatter library. General usage: owl write [options] input [output], where input can be either an RDF file, a URL (starting with http or https) or - (which means: read from standard in) and output can be either an RDF file or - (which means: write to standard out). If output is not given, the output filename is the input filename with its file extension changed, e.g. myontology.nt → myontology.ttl. If input is - or a URL and output is not given, the output is set to standard out. Table 2. write Command Options Option Description Default Notes -o, --output Output file format turtle Possible values: [turtle, rdfxml, ntriple, n3] -i, --input Input file format turtle Possible values: [turtle, rdfxml, ntriple, n3] -p, --prefix Prefix with corresponding URI to add as @prefix when serializing Turtle. This can be given multiple times, for multiple prefixes. You can specify a well-known prefix (currently: rdf, rdfs, xsd, owl, dcterms), e.g. -prdf or --prefix=rdf or any other prefix with its url: -pfoo=http://example.com/ or --prefix=foo=http://example.com/. To set the empty prefix, use -p==http://example.com/ or --prefix==http://example.com. --prefixAlign Alignment of @prefix statements off Possible values: [left, off, right] --encoding Output encoding utf_8 Possible values: [latin1, utf_16_be, utf_16_le, utf_8, utf_8_bom] --doubleFormat Defines how double numbers are formatted 0.####E0 See here for more information on the format --endOfLine End of line style lf Possible values: [cr, crlf, lf] --indent Indent style space Possible values: [tab, space]. Note that when choosing tab, alignPredicates and alignObjects are automatically treated as false. --firstPredicateInNewLine Write first predicate in new line of block Switched off by default --writeRdfType Write rdf:type instead of a Switched off by default --useCommaByDefault Use commas for multiple objects Switched off by default --noCommaForPredicate Use no commas for multiple objects for this predicate This can be given multiple times. --useLongLiterals Use long form for literals, e.g. \"5\"^^xsd:integer instead of 5 Switched off by default --alignObjects Align objects for same predicates Switched off by default --alignPredicates Align predicates for same subjects Switched off by default --continuationIndentSize Indentation size after forced line wraps 4 --doNotInsertFinalNewline Do not insert newline at end of file Switched off by default --indentSize Indentation size in spaces 2 --keepUnusedPrefixes Keeps prefixes that are not part of any statement Switched off by default --prefixOrder Sort order for prefixes (if they appear in a model) [rdf, rdfs, xsd, owl] Add this switch multiple times, once for each prefix, in the desired order --subjectOrder Sort order for subjects by type (if they appear in a model) [rdfs:Class, owl:Ontology, owl:Class, rdf:Property, owl:ObjectProperty, owl:DatatypeProperty, owl:AnnotationProperty, owl:NamedIndividual, owl:AllDifferent, owl:Axiom] Add this switch multiple times, once for each subject type, in the desired order --predicateOrder Sort order for predicates (if they appear on a subject) [rdf:type, rdfs:label, rdfs:comment, dcterms:description] Add this switch multiple times, once for each predicate, in the desired order --objectOrder Sort order for objects [owl:NamedIndividual, owl:ObjectProperty, owl:DatatypeProperty, owl:AnnotationProperty, owl:FunctionalProperty, owl:InverseFunctionalProperty, owl:TransitiveProperty, owl:SymmetricProperty, owl:AsymmetricProperty, owl:ReflexiveProperty, owl:IrreflexiveProperty] Add this switch multiple times, once for each object type, in the desired order --anonymousNodeIdPattern Name pattern for blank node IDs _:gen0 A 0 inside the pattern will be replace with the index of the respective blank node Simple invocation with default arguments: # Read myontology.ttl and print it in formatted Turtle format owl write myontology.ttl # Read myontology.owl in RDF/XML format and print it in formatted Turtle format, writing output.ttl owl write -i rdfxml myontology.owl output.ttl # Read myontology.n3 in N3 format and print it in formatted Turtle format to stdout owl write -i n3 myontology.n3 # Read myontology.nt in N-Triples format and print it in RDF/XML format to stdout owl write -i ntriple -o rdfxml myontology.nt Read an N-Triples file and write formatted Turtle, while also configuring which prefixes should be used: owl write -prdf -powl -pxsd -p'ex=http://example.com#' -i ntriple myontology.nt Read a Turtle file and print it out, while configuring the output’s formatting and prefix order: owl write --indentSize 4 --writeRdfType --prefixOrder owl --prefixOrder rdf myontology.turtle Read a remote ontology in RDF/XML format and print it in formatted Turtle format: owl write -i rdfxml 'http://www.ontologydesignpatterns.org/cp/owl/partof.owl' The infer command takes an OWL ontology as input and performs OWL 2 DL reasoning on it. Reasoning is done using the Openllet reasoner. General usage: owl infer input [output], where input can be either an ontology file, an URL or - (which means: read from standard in) and output can be either an ontology file or - (which means: write to standard out). If input is a file and output is not given, the input file is overwritten with the inferenced result. If input is - and output is not given, the output is set to standard out. Perform reasoning on the input ontology and write results to stdout: owl infer ontology.ttl -","title":"Usage","component":"main","version":"1.2.0","name":"usage","url":"/main/1.2.0/usage.html","titles":[{"text":"diagram Command","id":"diagram-command"},{"text":"General Usage","id":"diagram-usage"},{"text":"Options","id":"diagram-options"},{"text":"Example Usage","id":"diagram-example-usage"},{"text":"write Command","id":"write-command"},{"text":"General Usage","id":"write-usage"},{"text":"Options","id":"write-options"},{"text":"Example Usage","id":"write-example-usage"},{"text":"infer Command","id":"infer-command"},{"text":"General Usage","id":"infer-usage"},{"text":"Example Usage","id":"infer-example-usage"}]},"/main/1.2.1/diagram-notation.html":{"text":"This page describes the graphical notation for ontology diagrams generated by owl-cli. There is no standard diagram notation for OWL, but a number of tools provide their own notation. Popular options are the Protégé plugins OWLViz and OntoGraf, as well as the graphical notation of Topbraid Composer. Most notations have a strong focus on class and instance relationships, which is well-suited for visualizing this particular kind of ontology. However, other types of axioms, in particular more complex class expressions, are usually not represented. For this reason, during the writing of the PhD thesis, a more general graphical notation for ontologies was developed. The notation by owl-cli is influenced by the following other notations for OWL ontologies: The symbols and colors for classes, properties and data types as popularized by the Protégé ontology editor and also used by Topbraid Composer. The notation from the PhD thesis (as shown on pages 43 and 44), but with less focus on Description Logics notation and instead using the expressions syntax from Protégé. Arrows from UML (hollow arrow for inheritance, solid arrow for relations). Representation of OWL class restrictions and other elements in the specification of the OMG Ontology Definition Metamodel 1.1, cf. for example Figures 14.25, 14.26 and 14.27. The symbol for disjoint unions that is used in VOWL. The notation was designed with the following goals in mind: It must be possible to represent all OWL axioms in a meaningful way. The diagrams are used mainly for visualizing in documents, not necessarily for interactively editing an ontology. The diagram should be understandable for people familiar with the Protégé editor, because it is probably the most popular ontology editor. The semantics should be unambiguous from the visual representation: For example, using a UML-like class diagram for an OWL class that includes properties in its box like class attributes in UML is not self-explanatory: Are the properties restrictions on the class (existential? universal? both?), is the class the domain of the properties? Both have very different meanings than what a UML-like representation suggests. The following sections describe the graphical notation using examples. All diagrams on this page were generated with owl-cli. Each diagram links to the RDF/Turtle file it was generated from. Table 1. Mapping Syntax for OWL Element Types OWL Element Description Logics Notation Diagram Class( ) ObjectProperty( ) DataProperty( ) AnnotationProperty( ) no notation NamedIndividual( ) Datatype( ) no notation This section is aligned to the corresponding section in the OWL 2 Specification. Table 2. Mapping Syntax for Data Ranges OWL Expression Description Logics Notation Diagram DataIntersectionOf( ) DataUnionOf( ) DataComplementOf( ) DataOneOf( ) DatatypeRestriction( int minExclusive 4 maxInclusive 10 ) no notation The outline of this section is aligned to the corresponding section in the OWL 2 Specification. Table 3. Mapping Syntax for Propositional Connectives and Enumeration of Individuals OWL Expression Description Logics Notation Diagram ObjectIntersectionOf( ) ObjectUnionOf( ) ObjectComplementOf( ) ObjectOneOf( ) Table 4. Mapping Syntax for Object Property Restrictions OWL Expression Description Logics Notation Diagram ObjectSomeValuesFrom( ) ObjectAllValuesFrom( ) ObjectHasValue( ) ObjectInverseOf( ) ObjectHasSelf( ) Table 5. Mapping Syntax for Object Property Cardinality Restrictions OWL Expression Description Logics Notation Diagram ObjectMinCardinality( ) ObjectMinCardinality( ) ObjectMaxCardinality( ) ObjectMaxCardinality( ) ObjectExactCardinality( ) ObjectExactCardinality( ) Table 6. Mapping Syntax for Data Property Restrictions OWL Expression Description Logics Notation Diagram DataSomeValuesFrom( ) DataAllValuesFrom( ) DataHasValue( ) Table 7. Mapping Syntax for Data Property Cardinality Restrictions OWL Expression Description Logics Notation Diagram DataMinCardinality( ) DataMaxCardinality( ) DataExactCardinality( ) The outline of this section is aligned to the corresponding section in the OWL 2 Specification. Table 8. Mapping Syntax for Class Expression Axioms OWL Axiom Description Logics Notation Diagram SubClassOf( ) EquivalentClasses( ) DisjointClasses( ) DisjointUnion( ) Table 9. Mapping Syntax for Object Property Axioms OWL Axiom Description Logics Notation Diagram SubObjectPropertyOf( ) ObjectPropertyChain( ) EquivalentObjectProperties( ) DisjointObjectProperties( ) InverseObjectProperties( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) FunctionalObjectProperty( ) InverseFunctionalObjectProperty( ) ReflexiveObjectProperty( ) IrreflexiveObjectProperty( ) SymmetricObjectProperty( ) AsymmetricObjectProperty( ) TransitiveObjectProperty( ) Table 10. Mapping Syntax for Data Property Axioms OWL Axiom Description Logics Notation Diagram SubDataPropertyOf( ) EquivalentDataProperties( ) DisjointDataProperties( ) DataPropertyDomain( ) DataPropertyRange( ) FunctionalDataProperty( ) Table 11. Mapping Syntax for Datatype Definitions OWL Axiom Description Logics Notation Diagram DatatypeDefinition( ) no notation Table 12. Mapping Syntax for Keys OWL Axiom Description Logics Notation Diagram HasKeys( ) no notation Table 13. Mapping Syntax for Assertions OWL Axiom Description Logics Notation Diagram SameIndividuals( ) DifferentIndividuals( ) ClassAssertion( ) ObjectPropertyAssertion( ) NegativeObjectPropertyAssertion( ) DataPropertyAssertion( ) NegativeDataPropertyAssertion( ) Rules defined in the Semantic Web Rule Language (SWRL) can be embedded in an OWL ontology. Rules are rendered as described in Human Readable Syntax, and are linked with the ontology entities they refer to. The following table shows rendering examples for the different kinds of rule atoms. Table 14. Mapping Syntax for SWRL Rules Atom Type Diagram Class Class with Expression Object Property Data Property, Data Range Data Property, Builtin","title":"OWL Diagram Notation","component":"main","version":"1.2.1","name":"diagram-notation","url":"/main/1.2.1/diagram-notation.html","titles":[{"text":"Introduction","id":"introduction"},{"text":"Element Types","id":"element-types"},{"text":"Data Ranges","id":"data-ranges"},{"text":"Class Expressions","id":"class-expressions"},{"text":"Propositional Connectives and Enumeration of Individuals","id":"propositional-connectives-and-enumeration-of-individuals"},{"text":"Object Property Restrictions","id":"object-property-restrictions"},{"text":"Object Property Cardinality Restrictions","id":"object-property-cardinality-restrictions"},{"text":"Data Property Restrictions","id":"data-property-restrictions"},{"text":"Data Property Cardinality Restrictions","id":"data-property-cardinality-restrictions"},{"text":"Axioms","id":"axioms"},{"text":"Class Expression Axioms","id":"class-expression-axioms"},{"text":"Object Property Axioms","id":"object-property-axioms"},{"text":"Data Property Axioms","id":"data-property-axioms"},{"text":"Datatype Definitions","id":"datatype-definitions"},{"text":"Keys","id":"keys"},{"text":"Assertions","id":"assertions"},{"text":"SWRL Rules","id":"swrl-rules"}]},"/main/1.2.1/index.html":{"text":"(Version 1.2.1) owl-cli is a command line tool for ontology engineering. It targets the Web Ontology Language (OWL 2) and RDF. You can generate a diagram for an OWL ontology with the diagram command read any RDF document in RDF/Turtle, RDF/XML, RDF N-Triples or N3 format and write it in configurable, pretty-printed RDF/Turtle or one of the other formats using the write command perform OWL DL reasoning on an input ontology using the infer command You can find the source code on Github. Things you will need to have installed to run owl-cli: Graphviz for the generation of diagrams. Install in Windows (using Chocolatey): choco install graphviz Install in MacOs (using Brew): brew install graphviz Install in Ubuntu/Debian Linux: apt install graphviz Download the pre-built binary for your platform: owl-x86_64-windows-1.2.1.exe owl-x86_64-apple-darwin-1.2.1 owl-x86_64-linux-1.2.1 For other platforms or architectures, please use the executable .jar file: owl-cli-1.2.1.jar. This requires Java (OpenJDK) 17 or newer. Rename the binary to owl.exe (Windows) or owl (MacOs/Linux), put it in your favorite directory and add this directory to the PATH environment variable: Windows: setx /M path \"%path%;C:\\your\\path\\here\\\" MacOs/Linux: echo 'export PATH=/your/path/here:$PATH' >> ~/.bashrc; source ~/.bashrc If using the executable .jar file, the following commands will make the jar available as owl command as well. This works in MacOs and Linux. curl -L -o ~/.local/share/owl-cli/owl-cli.jar --create-dirs https://github.com/atextor/owl-cli/releases/download/v1.2.1/owl-cli-1.2.1.jar echo 'function owl() { java -jar ~/.local/share/owl-cli/owl-cli.jar $*; }' >> ~/.bashrc source ~/.bashrc After installation, you can use the owl command: See Usage for more information. For building the executable JAR file for owl-cli, you need Java 17. We recommend installation of the GraalVM-based JDK 17 using SDKMAN!. Run the following commands: # The following commands install SDKMAN!. If you have it installed already, you can skip it. curl -sL https://get.sdkman.io | bash echo sdkman_auto_answer=true > $HOME/.sdkman/etc/config echo sdkman_auto_selfupdate=true >> $HOME/.sdkman/etc/config source $HOME/.sdkman/bin/sdkman-init.sh # Use SDKMAN! to install JDK sdk install java 21.3.0.r17-grl sdk use java 21.3.0.r17-grl # Build the project git clone https://github.com/atextor/owl-cli.git cd owl-cli ./gradlew This will build cli/build/libs/owl-cli-snapshot.jar, which you then can install locally: mkdir -p ~/.local/share/owl-cli cp cli/build/libs/owl-cli-snapshot.jar !$/owl-cli.jar echo 'function owl() { java -jar ~/.local/share/owl-cli/owl-cli.jar $*; }' >> ~/.bashrc source ~/.bashrc After that, you can use the owl command: See Usage for more information. For building the owl-cli native binary, GraalVM is used. As Java 15+ source features are used, a JDK 17-based GraalVM version is required. For calling GraalVM’s native-image command, the gradle build relies on the install locations as used by SDKMAN!. The following instructions assume a BASH shell. On MacOs and Linux this is the default shell; on Windows you would have to use e.g. Git Bash or WSL2. Also on Windows, you will need to install Microsoft Visual C++. Please follow the GraalVM installation instructions. Run the following commands: # The following commands install SDKMAN!. If you have it installed already, # you can skip it. # Ubuntu only: SDKMAN! installation requires zip/unzip: sudo apt-get install zip unzip # Windows only: SDKMAN! installation requires zip/unzip: choco install zip choco install unzip # Install SDKMAN! curl -sL https://get.sdkman.io | bash echo sdkman_auto_answer=true > $HOME/.sdkman/etc/config echo sdkman_auto_selfupdate=true >> $HOME/.sdkman/etc/config source $HOME/.sdkman/bin/sdkman-init.sh # Use SDKMAN! to install JDK sdk install java 21.3.0.r17-grl sdk use java 21.2.0.r17-grl # Use GraalVMs update tool to install the native-image command gu install native-image # Ubuntu only: Install build dependencies sudo apt-get install -y build-essential libz-dev # Build the project git clone https://github.com/atextor/owl-cli.git cd owl-cli ./gradlew nativeImage This will build cli/build/bin/owl, which you can put anywhere on your PATH.","title":"owl-cli","component":"main","version":"1.2.1","name":"index","url":"/main/1.2.1/index.html","titles":[{"text":"Installation","id":"installation"},{"text":"Requirements","id":"requirements"},{"text":"Download and Install owl-cli","id":"download-and-install-owl-cli"},{"text":"Building from Source","id":"building-from-source"},{"text":"Building the executable JAR from source","id":"building-executable-jar"},{"text":"Building the native image (executable binary) from source","id":"building-native-image"}]},"/main/1.2.1/release-notes.html":{"text":"Bugfix in write command: Dahes in the prefix part of local names are not escaped any more Adds the infer command to perform OWL DL reasoning on an input ontology. Bugfixes in write command: Local names (curies) with escaped special characters are correctly parsed now; local names and literals are correctly escaped when writing. Adds the write command to read RDF files in multiple formats and write them out. When choosing RDF/Turtle as output format, the output is pretty-printed and formatting can be controlled. This is the first released version. It supports the diagram command to automatically generate diagrams from OWL ontologies.","title":"Release Notes","component":"main","version":"1.2.1","name":"release-notes","url":"/main/1.2.1/release-notes.html","titles":[{"text":"Version 1.2.1","id":"version-1-2-1"},{"text":"Version 1.2.0","id":"version-1-2-0"},{"text":"Version 1.1.0","id":"version-1-1-0"},{"text":"Version 1.0.0","id":"version-1-0-0"}]},"/main/1.2.1/usage.html":{"text":"Although the package is called owl-cli, the command you invoke is called owl. You can call the built-in overview of commands and arguments via --help: Usage: Usage: owl [-v] [--help] [--version] [COMMAND] Description: Command line tool for ontology engineering Options: --help Show short help -v, --verbose Specify multiple -v options to increase verbosity, e.g. use `-v`, `-vv` or `-vvv` for more details --version Show current version Commands: ... Other than the general help, you give one argument, the command, which will take its own arguments, for example: owl diagram --format png Commands that take ontology files as an input support all formats that are supported by OWL API, notably RDF/Turtle, RDF/XML, OWL/XML and OWL Functional Syntax. The diagram command takes an OWL ontology as input and generates an automatically layouted diagram for it in the SVG or PNG format. This is implemented by mapping the ontology’s axioms into a graph description in the Graphviz language, which is passed to its dot layouting engine. Attributes such as fonts can be customized using arguments. As no standardized graphical notation for OWL exists, the diagram notation used here is described in detail on a separate page: Diagram Notation. General usage: owl diagram [options] input [output], where input can be either an ontology file or - (which means: read from standard in) and output can be either an ontology file or - (which means: write to standard out). If output is not given, the output filename is the input filename with its file extension changed, e.g. myontology.ttl → myontology.svg. If input is - and output is not given, the output is set to standard out. Table 1. diagram Command Options Option Description Default Notes --direction Diagram layout direction left_to_right Possible values: [top_to_bottom, left_to_right] --dotbinary Path to dot binary dot By default, dot is searched for in your $PATH --fontname Default font Verdana --fontsize Default font size 12 --format Output file format svg Possible values: [png, svg] --nodefontname Font for nodes Verdana --nodefontsize Font size for nodes Verdana --nodemargin The margin to render inside of nodes 0.05,0.0 See the Graphviz documentation for more information --nodeshape Node shape box See the Graphviz documentation for more information --nodestyle Node style rounded See the Graphviz documentation for more information --fgcolor Color for boxes, fonts and edges white See the Graphviz documentation for more information --bgcolor Background color for the generated diagram white See the Graphviz documentation for more information Simple invocation with default arguments: # Will create myontology.svg owl diagram myontology.ttl Invocation where the output is specified as standard out and piped to convert to create a different format: owl diagram myontology.ttl - | convert - myontology.jpg Invocation where an ontology is downloaded, some terms are filtered and then piped to owl diagram: curl http://www.ontologydesignpatterns.org/cp/owl/partof.owl | \\ grep -v 'comment|cpannotation|versionInfo' | owl diagram - partof.svg The write command takes any RDF file in RDF/Turtle, RDF/XML, RDF N-Triples or N3 format as input and writes it out in any of those formats. When writing RDF/Turtle, the formatting of the resulting output can be configured extensively, as this makes use of the turtle-formatter library. General usage: owl write [options] input [output], where input can be either an RDF file, a URL (starting with http or https) or - (which means: read from standard in) and output can be either an RDF file or - (which means: write to standard out). If output is not given, the output filename is the input filename with its file extension changed, e.g. myontology.nt → myontology.ttl. If input is - or a URL and output is not given, the output is set to standard out. Table 2. write Command Options Option Description Default Notes -o, --output Output file format turtle Possible values: [turtle, rdfxml, ntriple, n3] -i, --input Input file format turtle Possible values: [turtle, rdfxml, ntriple, n3] -p, --prefix Prefix with corresponding URI to add as @prefix when serializing Turtle. This can be given multiple times, for multiple prefixes. You can specify a well-known prefix (currently: rdf, rdfs, xsd, owl, dcterms), e.g. -prdf or --prefix=rdf or any other prefix with its url: -pfoo=http://example.com/ or --prefix=foo=http://example.com/. To set the empty prefix, use -p==http://example.com/ or --prefix==http://example.com. --prefixAlign Alignment of @prefix statements off Possible values: [left, off, right] --encoding Output encoding utf_8 Possible values: [latin1, utf_16_be, utf_16_le, utf_8, utf_8_bom] --doubleFormat Defines how double numbers are formatted 0.####E0 See here for more information on the format --endOfLine End of line style lf Possible values: [cr, crlf, lf] --indent Indent style space Possible values: [tab, space]. Note that when choosing tab, alignPredicates and alignObjects are automatically treated as false. --firstPredicateInNewLine Write first predicate in new line of block Switched off by default --writeRdfType Write rdf:type instead of a Switched off by default --useCommaByDefault Use commas for multiple objects Switched off by default --noCommaForPredicate Use no commas for multiple objects for this predicate This can be given multiple times. --useLongLiterals Use long form for literals, e.g. \"5\"^^xsd:integer instead of 5 Switched off by default --alignObjects Align objects for same predicates Switched off by default --alignPredicates Align predicates for same subjects Switched off by default --continuationIndentSize Indentation size after forced line wraps 4 --doNotInsertFinalNewline Do not insert newline at end of file Switched off by default --indentSize Indentation size in spaces 2 --keepUnusedPrefixes Keeps prefixes that are not part of any statement Switched off by default --prefixOrder Sort order for prefixes (if they appear in a model) [rdf, rdfs, xsd, owl] Add this switch multiple times, once for each prefix, in the desired order --subjectOrder Sort order for subjects by type (if they appear in a model) [rdfs:Class, owl:Ontology, owl:Class, rdf:Property, owl:ObjectProperty, owl:DatatypeProperty, owl:AnnotationProperty, owl:NamedIndividual, owl:AllDifferent, owl:Axiom] Add this switch multiple times, once for each subject type, in the desired order --predicateOrder Sort order for predicates (if they appear on a subject) [rdf:type, rdfs:label, rdfs:comment, dcterms:description] Add this switch multiple times, once for each predicate, in the desired order --objectOrder Sort order for objects [owl:NamedIndividual, owl:ObjectProperty, owl:DatatypeProperty, owl:AnnotationProperty, owl:FunctionalProperty, owl:InverseFunctionalProperty, owl:TransitiveProperty, owl:SymmetricProperty, owl:AsymmetricProperty, owl:ReflexiveProperty, owl:IrreflexiveProperty] Add this switch multiple times, once for each object type, in the desired order --anonymousNodeIdPattern Name pattern for blank node IDs _:gen0 A 0 inside the pattern will be replace with the index of the respective blank node Simple invocation with default arguments: # Read myontology.ttl and print it in formatted Turtle format owl write myontology.ttl # Read myontology.owl in RDF/XML format and print it in formatted Turtle format, writing output.ttl owl write -i rdfxml myontology.owl output.ttl # Read myontology.n3 in N3 format and print it in formatted Turtle format to stdout owl write -i n3 myontology.n3 # Read myontology.nt in N-Triples format and print it in RDF/XML format to stdout owl write -i ntriple -o rdfxml myontology.nt Read an N-Triples file and write formatted Turtle, while also configuring which prefixes should be used: owl write -prdf -powl -pxsd -p'ex=http://example.com#' -i ntriple myontology.nt Read a Turtle file and print it out, while configuring the output’s formatting and prefix order: owl write --indentSize 4 --writeRdfType --prefixOrder owl --prefixOrder rdf myontology.turtle Read a remote ontology in RDF/XML format and print it in formatted Turtle format: owl write -i rdfxml 'http://www.ontologydesignpatterns.org/cp/owl/partof.owl' The infer command takes an OWL ontology as input and performs OWL 2 DL reasoning on it. Reasoning is done using the Openllet reasoner. General usage: owl infer input [output], where input can be either an ontology file, an URL or - (which means: read from standard in) and output can be either an ontology file or - (which means: write to standard out). If input is a file and output is not given, the input file is overwritten with the inferenced result. If input is - and output is not given, the output is set to standard out. Perform reasoning on the input ontology and write results to stdout: owl infer ontology.ttl -","title":"Usage","component":"main","version":"1.2.1","name":"usage","url":"/main/1.2.1/usage.html","titles":[{"text":"diagram Command","id":"diagram-command"},{"text":"General Usage","id":"diagram-usage"},{"text":"Options","id":"diagram-options"},{"text":"Example Usage","id":"diagram-example-usage"},{"text":"write Command","id":"write-command"},{"text":"General Usage","id":"write-usage"},{"text":"Options","id":"write-options"},{"text":"Example Usage","id":"write-example-usage"},{"text":"infer Command","id":"infer-command"},{"text":"General Usage","id":"infer-usage"},{"text":"Example Usage","id":"infer-example-usage"}]},"/main/1.2.2/diagram-notation.html":{"text":"This page describes the graphical notation for ontology diagrams generated by owl-cli. There is no standard diagram notation for OWL, but a number of tools provide their own notation. Popular options are the Protégé plugins OWLViz and OntoGraf, as well as the graphical notation of Topbraid Composer. Most notations have a strong focus on class and instance relationships, which is well-suited for visualizing this particular kind of ontology. However, other types of axioms, in particular more complex class expressions, are usually not represented. For this reason, during the writing of the PhD thesis, a more general graphical notation for ontologies was developed. The notation by owl-cli is influenced by the following other notations for OWL ontologies: The symbols and colors for classes, properties and data types as popularized by the Protégé ontology editor and also used by Topbraid Composer. The notation from the PhD thesis (as shown on pages 43 and 44), but with less focus on Description Logics notation and instead using the expressions syntax from Protégé. Arrows from UML (hollow arrow for inheritance, solid arrow for relations). Representation of OWL class restrictions and other elements in the specification of the OMG Ontology Definition Metamodel 1.1, cf. for example Figures 14.25, 14.26 and 14.27. The symbol for disjoint unions that is used in VOWL. The notation was designed with the following goals in mind: It must be possible to represent all OWL axioms in a meaningful way. The diagrams are used mainly for visualizing in documents, not necessarily for interactively editing an ontology. The diagram should be understandable for people familiar with the Protégé editor, because it is probably the most popular ontology editor. The semantics should be unambiguous from the visual representation: For example, using a UML-like class diagram for an OWL class that includes properties in its box like class attributes in UML is not self-explanatory: Are the properties restrictions on the class (existential? universal? both?), is the class the domain of the properties? Both have very different meanings than what a UML-like representation suggests. The following sections describe the graphical notation using examples. All diagrams on this page were generated with owl-cli. Each diagram links to the RDF/Turtle file it was generated from. Table 1. Mapping Syntax for OWL Element Types OWL Element Description Logics Notation Diagram Class( ) ObjectProperty( ) DataProperty( ) AnnotationProperty( ) no notation NamedIndividual( ) Datatype( ) no notation This section is aligned to the corresponding section in the OWL 2 Specification. Table 2. Mapping Syntax for Data Ranges OWL Expression Description Logics Notation Diagram DataIntersectionOf( ) DataUnionOf( ) DataComplementOf( ) DataOneOf( ) DatatypeRestriction( int minExclusive 4 maxInclusive 10 ) no notation The outline of this section is aligned to the corresponding section in the OWL 2 Specification. Table 3. Mapping Syntax for Propositional Connectives and Enumeration of Individuals OWL Expression Description Logics Notation Diagram ObjectIntersectionOf( ) ObjectUnionOf( ) ObjectComplementOf( ) ObjectOneOf( ) Table 4. Mapping Syntax for Object Property Restrictions OWL Expression Description Logics Notation Diagram ObjectSomeValuesFrom( ) ObjectAllValuesFrom( ) ObjectHasValue( ) ObjectInverseOf( ) ObjectHasSelf( ) Table 5. Mapping Syntax for Object Property Cardinality Restrictions OWL Expression Description Logics Notation Diagram ObjectMinCardinality( ) ObjectMinCardinality( ) ObjectMaxCardinality( ) ObjectMaxCardinality( ) ObjectExactCardinality( ) ObjectExactCardinality( ) Table 6. Mapping Syntax for Data Property Restrictions OWL Expression Description Logics Notation Diagram DataSomeValuesFrom( ) DataAllValuesFrom( ) DataHasValue( ) Table 7. Mapping Syntax for Data Property Cardinality Restrictions OWL Expression Description Logics Notation Diagram DataMinCardinality( ) DataMaxCardinality( ) DataExactCardinality( ) The outline of this section is aligned to the corresponding section in the OWL 2 Specification. Table 8. Mapping Syntax for Class Expression Axioms OWL Axiom Description Logics Notation Diagram SubClassOf( ) EquivalentClasses( ) DisjointClasses( ) DisjointUnion( ) Table 9. Mapping Syntax for Object Property Axioms OWL Axiom Description Logics Notation Diagram SubObjectPropertyOf( ) ObjectPropertyChain( ) EquivalentObjectProperties( ) DisjointObjectProperties( ) InverseObjectProperties( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) FunctionalObjectProperty( ) InverseFunctionalObjectProperty( ) ReflexiveObjectProperty( ) IrreflexiveObjectProperty( ) SymmetricObjectProperty( ) AsymmetricObjectProperty( ) TransitiveObjectProperty( ) Table 10. Mapping Syntax for Data Property Axioms OWL Axiom Description Logics Notation Diagram SubDataPropertyOf( ) EquivalentDataProperties( ) DisjointDataProperties( ) DataPropertyDomain( ) DataPropertyRange( ) FunctionalDataProperty( ) Table 11. Mapping Syntax for Datatype Definitions OWL Axiom Description Logics Notation Diagram DatatypeDefinition( ) no notation Table 12. Mapping Syntax for Keys OWL Axiom Description Logics Notation Diagram HasKeys( ) no notation Table 13. Mapping Syntax for Assertions OWL Axiom Description Logics Notation Diagram SameIndividuals( ) DifferentIndividuals( ) ClassAssertion( ) ObjectPropertyAssertion( ) NegativeObjectPropertyAssertion( ) DataPropertyAssertion( ) NegativeDataPropertyAssertion( ) Rules defined in the Semantic Web Rule Language (SWRL) can be embedded in an OWL ontology. Rules are rendered as described in Human Readable Syntax, and are linked with the ontology entities they refer to. The following table shows rendering examples for the different kinds of rule atoms. Table 14. Mapping Syntax for SWRL Rules Atom Type Diagram Class Class with Expression Object Property Data Property, Data Range Data Property, Builtin","title":"OWL Diagram Notation","component":"main","version":"1.2.2","name":"diagram-notation","url":"/main/1.2.2/diagram-notation.html","titles":[{"text":"Introduction","id":"introduction"},{"text":"Element Types","id":"element-types"},{"text":"Data Ranges","id":"data-ranges"},{"text":"Class Expressions","id":"class-expressions"},{"text":"Propositional Connectives and Enumeration of Individuals","id":"propositional-connectives-and-enumeration-of-individuals"},{"text":"Object Property Restrictions","id":"object-property-restrictions"},{"text":"Object Property Cardinality Restrictions","id":"object-property-cardinality-restrictions"},{"text":"Data Property Restrictions","id":"data-property-restrictions"},{"text":"Data Property Cardinality Restrictions","id":"data-property-cardinality-restrictions"},{"text":"Axioms","id":"axioms"},{"text":"Class Expression Axioms","id":"class-expression-axioms"},{"text":"Object Property Axioms","id":"object-property-axioms"},{"text":"Data Property Axioms","id":"data-property-axioms"},{"text":"Datatype Definitions","id":"datatype-definitions"},{"text":"Keys","id":"keys"},{"text":"Assertions","id":"assertions"},{"text":"SWRL Rules","id":"swrl-rules"}]},"/main/1.2.2/index.html":{"text":"(Version 1.2.2) owl-cli is a command line tool for ontology engineering. It targets the Web Ontology Language (OWL 2) and RDF. You can generate a diagram for an OWL ontology with the diagram command read any RDF document in RDF/Turtle, RDF/XML, RDF N-Triples or N3 format and write it in configurable, pretty-printed RDF/Turtle or one of the other formats using the write command perform OWL DL reasoning on an input ontology using the infer command You can find the source code on Github. Things you will need to have installed to run owl-cli: Graphviz for the generation of diagrams. Install in Windows (using Chocolatey): choco install graphviz Install in MacOs (using Brew): brew install graphviz Install in Ubuntu/Debian Linux: apt install graphviz Download the pre-built binary for your platform: owl-x86_64-windows-1.2.2.exe owl-x86_64-apple-darwin-1.2.2 owl-x86_64-linux-1.2.2 For other platforms or architectures, please use the executable .jar file: owl-cli-1.2.2.jar. This requires Java (OpenJDK) 17 or newer. Rename the binary to owl.exe (Windows) or owl (MacOs/Linux), put it in your favorite directory and add this directory to the PATH environment variable: Windows: setx /M path \"%path%;C:\\your\\path\\here\\\" MacOs/Linux: echo 'export PATH=/your/path/here:$PATH' >> ~/.bashrc; source ~/.bashrc If using the executable .jar file, the following commands will make the jar available as owl command as well. This works in MacOs and Linux. curl -L -o ~/.local/share/owl-cli/owl-cli.jar --create-dirs https://github.com/atextor/owl-cli/releases/download/v1.2.2/owl-cli-1.2.2.jar echo 'function owl() { java -jar ~/.local/share/owl-cli/owl-cli.jar $*; }' >> ~/.bashrc source ~/.bashrc After installation, you can use the owl command: See Usage for more information. For building the executable JAR file for owl-cli, you need Java 17. We recommend installation of the GraalVM-based JDK 17 using SDKMAN!. Run the following commands: # The following commands install SDKMAN!. If you have it installed already, you can skip it. curl -sL https://get.sdkman.io | bash echo sdkman_auto_answer=true > $HOME/.sdkman/etc/config echo sdkman_auto_selfupdate=true >> $HOME/.sdkman/etc/config source $HOME/.sdkman/bin/sdkman-init.sh # Use SDKMAN! to install JDK sdk install java 21.3.0.r17-grl sdk use java 21.3.0.r17-grl # Build the project git clone https://github.com/atextor/owl-cli.git cd owl-cli ./gradlew This will build cli/build/libs/owl-cli-snapshot.jar, which you then can install locally: mkdir -p ~/.local/share/owl-cli cp cli/build/libs/owl-cli-snapshot.jar !$/owl-cli.jar echo 'function owl() { java -jar ~/.local/share/owl-cli/owl-cli.jar $*; }' >> ~/.bashrc source ~/.bashrc After that, you can use the owl command: See Usage for more information. For building the owl-cli native binary, GraalVM is used. As Java 15+ source features are used, a JDK 17-based GraalVM version is required. For calling GraalVM’s native-image command, the gradle build relies on the install locations as used by SDKMAN!. The following instructions assume a BASH shell. On MacOs and Linux this is the default shell; on Windows you would have to use e.g. Git Bash or WSL2. Also on Windows, you will need to install Microsoft Visual C++. Please follow the GraalVM installation instructions. Run the following commands: # The following commands install SDKMAN!. If you have it installed already, # you can skip it. # Ubuntu only: SDKMAN! installation requires zip/unzip: sudo apt-get install zip unzip # Windows only: SDKMAN! installation requires zip/unzip: choco install zip choco install unzip # Install SDKMAN! curl -sL https://get.sdkman.io | bash echo sdkman_auto_answer=true > $HOME/.sdkman/etc/config echo sdkman_auto_selfupdate=true >> $HOME/.sdkman/etc/config source $HOME/.sdkman/bin/sdkman-init.sh # Use SDKMAN! to install JDK sdk install java 21.3.0.r17-grl sdk use java 21.2.0.r17-grl # Use GraalVMs update tool to install the native-image command gu install native-image # Ubuntu only: Install build dependencies sudo apt-get install -y build-essential libz-dev # Build the project git clone https://github.com/atextor/owl-cli.git cd owl-cli ./gradlew nativeImage This will build cli/build/bin/owl, which you can put anywhere on your PATH.","title":"owl-cli","component":"main","version":"1.2.2","name":"index","url":"/main/1.2.2/index.html","titles":[{"text":"Installation","id":"installation"},{"text":"Requirements","id":"requirements"},{"text":"Download and Install owl-cli","id":"download-and-install-owl-cli"},{"text":"Building from Source","id":"building-from-source"},{"text":"Building the executable JAR from source","id":"building-executable-jar"},{"text":"Building the native image (executable binary) from source","id":"building-native-image"}]},"/main/1.2.2/release-notes.html":{"text":"Change in write command: Dashes, underscores and full stops in the name part of local names are not escaped any more. Both variants are valid, but reading RDF/Turtle is easier without the escapes. Bugfix in write command: Dashes in the prefix part of local names are not escaped any more Adds the infer command to perform OWL DL reasoning on an input ontology. Bugfixes in write command: Local names (curies) with escaped special characters are correctly parsed now; local names and literals are correctly escaped when writing. Adds the write command to read RDF files in multiple formats and write them out. When choosing RDF/Turtle as output format, the output is pretty-printed and formatting can be controlled. This is the first released version. It supports the diagram command to automatically generate diagrams from OWL ontologies.","title":"Release Notes","component":"main","version":"1.2.2","name":"release-notes","url":"/main/1.2.2/release-notes.html","titles":[{"text":"Version 1.2.2","id":"version-1-2-2"},{"text":"Version 1.2.1","id":"version-1-2-1"},{"text":"Version 1.2.0","id":"version-1-2-0"},{"text":"Version 1.1.0","id":"version-1-1-0"},{"text":"Version 1.0.0","id":"version-1-0-0"}]},"/main/1.2.2/usage.html":{"text":"Although the package is called owl-cli, the command you invoke is called owl. You can call the built-in overview of commands and arguments via --help: Usage: Usage: owl [-v] [--help] [--version] [COMMAND] Description: Command line tool for ontology engineering Options: --help Show short help -v, --verbose Specify multiple -v options to increase verbosity, e.g. use `-v`, `-vv` or `-vvv` for more details --version Show current version Commands: ... Other than the general help, you give one argument, the command, which will take its own arguments, for example: owl diagram --format png Commands that take ontology files as an input support all formats that are supported by OWL API, notably RDF/Turtle, RDF/XML, OWL/XML and OWL Functional Syntax. The diagram command takes an OWL ontology as input and generates an automatically layouted diagram for it in the SVG or PNG format. This is implemented by mapping the ontology’s axioms into a graph description in the Graphviz language, which is passed to its dot layouting engine. Attributes such as fonts can be customized using arguments. As no standardized graphical notation for OWL exists, the diagram notation used here is described in detail on a separate page: Diagram Notation. General usage: owl diagram [options] input [output], where input can be either an ontology file or - (which means: read from standard in) and output can be either an ontology file or - (which means: write to standard out). If output is not given, the output filename is the input filename with its file extension changed, e.g. myontology.ttl → myontology.svg. If input is - and output is not given, the output is set to standard out. Table 1. diagram Command Options Option Description Default Notes --direction Diagram layout direction left_to_right Possible values: [top_to_bottom, left_to_right] --dotbinary Path to dot binary dot By default, dot is searched for in your $PATH --fontname Default font Verdana --fontsize Default font size 12 --format Output file format svg Possible values: [png, svg] --nodefontname Font for nodes Verdana --nodefontsize Font size for nodes Verdana --nodemargin The margin to render inside of nodes 0.05,0.0 See the Graphviz documentation for more information --nodeshape Node shape box See the Graphviz documentation for more information --nodestyle Node style rounded See the Graphviz documentation for more information --fgcolor Color for boxes, fonts and edges white See the Graphviz documentation for more information --bgcolor Background color for the generated diagram white See the Graphviz documentation for more information Simple invocation with default arguments: # Will create myontology.svg owl diagram myontology.ttl Invocation where the output is specified as standard out and piped to convert to create a different format: owl diagram myontology.ttl - | convert - myontology.jpg Invocation where an ontology is downloaded, some terms are filtered and then piped to owl diagram: curl http://www.ontologydesignpatterns.org/cp/owl/partof.owl | \\ grep -v 'comment|cpannotation|versionInfo' | owl diagram - partof.svg The write command takes any RDF file in RDF/Turtle, RDF/XML, RDF N-Triples or N3 format as input and writes it out in any of those formats. When writing RDF/Turtle, the formatting of the resulting output can be configured extensively, as this makes use of the turtle-formatter library. General usage: owl write [options] input [output], where input can be either an RDF file, a URL (starting with http or https) or - (which means: read from standard in) and output can be either an RDF file or - (which means: write to standard out). If output is not given, the output filename is the input filename with its file extension changed, e.g. myontology.nt → myontology.ttl. If input is - or a URL and output is not given, the output is set to standard out. Table 2. write Command Options Option Description Default Notes -o, --output Output file format turtle Possible values: [turtle, rdfxml, ntriple, n3] -i, --input Input file format turtle Possible values: [turtle, rdfxml, ntriple, n3] -p, --prefix Prefix with corresponding URI to add as @prefix when serializing Turtle. This can be given multiple times, for multiple prefixes. You can specify a well-known prefix (currently: rdf, rdfs, xsd, owl, dcterms), e.g. -prdf or --prefix=rdf or any other prefix with its url: -pfoo=http://example.com/ or --prefix=foo=http://example.com/. To set the empty prefix, use -p==http://example.com/ or --prefix==http://example.com. --prefixAlign Alignment of @prefix statements off Possible values: [left, off, right] --encoding Output encoding utf_8 Possible values: [latin1, utf_16_be, utf_16_le, utf_8, utf_8_bom] --doubleFormat Defines how double numbers are formatted 0.####E0 See here for more information on the format --endOfLine End of line style lf Possible values: [cr, crlf, lf] --indent Indent style space Possible values: [tab, space]. Note that when choosing tab, alignPredicates and alignObjects are automatically treated as false. --firstPredicateInNewLine Write first predicate in new line of block Switched off by default --writeRdfType Write rdf:type instead of a Switched off by default --useCommaByDefault Use commas for multiple objects Switched off by default --noCommaForPredicate Use no commas for multiple objects for this predicate This can be given multiple times. --useLongLiterals Use long form for literals, e.g. \"5\"^^xsd:integer instead of 5 Switched off by default --alignObjects Align objects for same predicates Switched off by default --alignPredicates Align predicates for same subjects Switched off by default --continuationIndentSize Indentation size after forced line wraps 4 --doNotInsertFinalNewline Do not insert newline at end of file Switched off by default --indentSize Indentation size in spaces 2 --keepUnusedPrefixes Keeps prefixes that are not part of any statement Switched off by default --prefixOrder Sort order for prefixes (if they appear in a model) [rdf, rdfs, xsd, owl] Add this switch multiple times, once for each prefix, in the desired order --subjectOrder Sort order for subjects by type (if they appear in a model) [rdfs:Class, owl:Ontology, owl:Class, rdf:Property, owl:ObjectProperty, owl:DatatypeProperty, owl:AnnotationProperty, owl:NamedIndividual, owl:AllDifferent, owl:Axiom] Add this switch multiple times, once for each subject type, in the desired order --predicateOrder Sort order for predicates (if they appear on a subject) [rdf:type, rdfs:label, rdfs:comment, dcterms:description] Add this switch multiple times, once for each predicate, in the desired order --objectOrder Sort order for objects [owl:NamedIndividual, owl:ObjectProperty, owl:DatatypeProperty, owl:AnnotationProperty, owl:FunctionalProperty, owl:InverseFunctionalProperty, owl:TransitiveProperty, owl:SymmetricProperty, owl:AsymmetricProperty, owl:ReflexiveProperty, owl:IrreflexiveProperty] Add this switch multiple times, once for each object type, in the desired order --anonymousNodeIdPattern Name pattern for blank node IDs _:gen0 A 0 inside the pattern will be replace with the index of the respective blank node Simple invocation with default arguments: # Read myontology.ttl and print it in formatted Turtle format owl write myontology.ttl # Read myontology.owl in RDF/XML format and print it in formatted Turtle format, writing output.ttl owl write -i rdfxml myontology.owl output.ttl # Read myontology.n3 in N3 format and print it in formatted Turtle format to stdout owl write -i n3 myontology.n3 # Read myontology.nt in N-Triples format and print it in RDF/XML format to stdout owl write -i ntriple -o rdfxml myontology.nt Read an N-Triples file and write formatted Turtle, while also configuring which prefixes should be used: owl write -prdf -powl -pxsd -p'ex=http://example.com#' -i ntriple myontology.nt Read a Turtle file and print it out, while configuring the output’s formatting and prefix order: owl write --indentSize 4 --writeRdfType --prefixOrder owl --prefixOrder rdf myontology.turtle Read a remote ontology in RDF/XML format and print it in formatted Turtle format: owl write -i rdfxml 'http://www.ontologydesignpatterns.org/cp/owl/partof.owl' The infer command takes an OWL ontology as input and performs OWL 2 DL reasoning on it. Reasoning is done using the Openllet reasoner. General usage: owl infer input [output], where input can be either an ontology file, an URL or - (which means: read from standard in) and output can be either an ontology file or - (which means: write to standard out). If input is a file and output is not given, the input file is overwritten with the inferenced result. If input is - and output is not given, the output is set to standard out. Perform reasoning on the input ontology and write results to stdout: owl infer ontology.ttl -","title":"Usage","component":"main","version":"1.2.2","name":"usage","url":"/main/1.2.2/usage.html","titles":[{"text":"diagram Command","id":"diagram-command"},{"text":"General Usage","id":"diagram-usage"},{"text":"Options","id":"diagram-options"},{"text":"Example Usage","id":"diagram-example-usage"},{"text":"write Command","id":"write-command"},{"text":"General Usage","id":"write-usage"},{"text":"Options","id":"write-options"},{"text":"Example Usage","id":"write-example-usage"},{"text":"infer Command","id":"infer-command"},{"text":"General Usage","id":"infer-usage"},{"text":"Example Usage","id":"infer-example-usage"}]},"/main/1.2.3/diagram-notation.html":{"text":"This page describes the graphical notation for ontology diagrams generated by owl-cli. There is no standard diagram notation for OWL, but a number of tools provide their own notation. Popular options are the Protégé plugins OWLViz and OntoGraf, as well as the graphical notation of Topbraid Composer. Most notations have a strong focus on class and instance relationships, which is well-suited for visualizing this particular kind of ontology. However, other types of axioms, in particular more complex class expressions, are usually not represented. For this reason, during the writing of the PhD thesis, a more general graphical notation for ontologies was developed. The notation by owl-cli is influenced by the following other notations for OWL ontologies: The symbols and colors for classes, properties and data types as popularized by the Protégé ontology editor and also used by Topbraid Composer. The notation from the PhD thesis (as shown on pages 43 and 44), but with less focus on Description Logics notation and instead using the expressions syntax from Protégé. Arrows from UML (hollow arrow for inheritance, solid arrow for relations). Representation of OWL class restrictions and other elements in the specification of the OMG Ontology Definition Metamodel 1.1, cf. for example Figures 14.25, 14.26 and 14.27. The symbol for disjoint unions that is used in VOWL. The notation was designed with the following goals in mind: It must be possible to represent all OWL axioms in a meaningful way. The diagrams are used mainly for visualizing in documents, not necessarily for interactively editing an ontology. The diagram should be understandable for people familiar with the Protégé editor, because it is probably the most popular ontology editor. The semantics should be unambiguous from the visual representation: For example, using a UML-like class diagram for an OWL class that includes properties in its box like class attributes in UML is not self-explanatory: Are the properties restrictions on the class (existential? universal? both?), is the class the domain of the properties? Both have very different meanings than what a UML-like representation suggests. The following sections describe the graphical notation using examples. All diagrams on this page were generated with owl-cli. Each diagram links to the RDF/Turtle file it was generated from. Table 1. Mapping Syntax for OWL Element Types OWL Element Description Logics Notation Diagram Class( ) ObjectProperty( ) DataProperty( ) AnnotationProperty( ) no notation NamedIndividual( ) Datatype( ) no notation This section is aligned to the corresponding section in the OWL 2 Specification. Table 2. Mapping Syntax for Data Ranges OWL Expression Description Logics Notation Diagram DataIntersectionOf( ) DataUnionOf( ) DataComplementOf( ) DataOneOf( ) DatatypeRestriction( int minExclusive 4 maxInclusive 10 ) no notation The outline of this section is aligned to the corresponding section in the OWL 2 Specification. Table 3. Mapping Syntax for Propositional Connectives and Enumeration of Individuals OWL Expression Description Logics Notation Diagram ObjectIntersectionOf( ) ObjectUnionOf( ) ObjectComplementOf( ) ObjectOneOf( ) Table 4. Mapping Syntax for Object Property Restrictions OWL Expression Description Logics Notation Diagram ObjectSomeValuesFrom( ) ObjectAllValuesFrom( ) ObjectHasValue( ) ObjectInverseOf( ) ObjectHasSelf( ) Table 5. Mapping Syntax for Object Property Cardinality Restrictions OWL Expression Description Logics Notation Diagram ObjectMinCardinality( ) ObjectMinCardinality( ) ObjectMaxCardinality( ) ObjectMaxCardinality( ) ObjectExactCardinality( ) ObjectExactCardinality( ) Table 6. Mapping Syntax for Data Property Restrictions OWL Expression Description Logics Notation Diagram DataSomeValuesFrom( ) DataAllValuesFrom( ) DataHasValue( ) Table 7. Mapping Syntax for Data Property Cardinality Restrictions OWL Expression Description Logics Notation Diagram DataMinCardinality( ) DataMaxCardinality( ) DataExactCardinality( ) The outline of this section is aligned to the corresponding section in the OWL 2 Specification. Table 8. Mapping Syntax for Class Expression Axioms OWL Axiom Description Logics Notation Diagram SubClassOf( ) EquivalentClasses( ) DisjointClasses( ) DisjointUnion( ) Table 9. Mapping Syntax for Object Property Axioms OWL Axiom Description Logics Notation Diagram SubObjectPropertyOf( ) ObjectPropertyChain( ) EquivalentObjectProperties( ) DisjointObjectProperties( ) InverseObjectProperties( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) FunctionalObjectProperty( ) InverseFunctionalObjectProperty( ) ReflexiveObjectProperty( ) IrreflexiveObjectProperty( ) SymmetricObjectProperty( ) AsymmetricObjectProperty( ) TransitiveObjectProperty( ) Table 10. Mapping Syntax for Data Property Axioms OWL Axiom Description Logics Notation Diagram SubDataPropertyOf( ) EquivalentDataProperties( ) DisjointDataProperties( ) DataPropertyDomain( ) DataPropertyRange( ) FunctionalDataProperty( ) Table 11. Mapping Syntax for Datatype Definitions OWL Axiom Description Logics Notation Diagram DatatypeDefinition( ) no notation Table 12. Mapping Syntax for Keys OWL Axiom Description Logics Notation Diagram HasKeys( ) no notation Table 13. Mapping Syntax for Assertions OWL Axiom Description Logics Notation Diagram SameIndividuals( ) DifferentIndividuals( ) ClassAssertion( ) ObjectPropertyAssertion( ) NegativeObjectPropertyAssertion( ) DataPropertyAssertion( ) NegativeDataPropertyAssertion( ) Rules defined in the Semantic Web Rule Language (SWRL) can be embedded in an OWL ontology. Rules are rendered as described in Human Readable Syntax, and are linked with the ontology entities they refer to. The following table shows rendering examples for the different kinds of rule atoms. Table 14. Mapping Syntax for SWRL Rules Atom Type Diagram Class Class with Expression Object Property Data Property, Data Range Data Property, Builtin","title":"OWL Diagram Notation","component":"main","version":"1.2.3","name":"diagram-notation","url":"/main/1.2.3/diagram-notation.html","titles":[{"text":"Introduction","id":"introduction"},{"text":"Element Types","id":"element-types"},{"text":"Data Ranges","id":"data-ranges"},{"text":"Class Expressions","id":"class-expressions"},{"text":"Propositional Connectives and Enumeration of Individuals","id":"propositional-connectives-and-enumeration-of-individuals"},{"text":"Object Property Restrictions","id":"object-property-restrictions"},{"text":"Object Property Cardinality Restrictions","id":"object-property-cardinality-restrictions"},{"text":"Data Property Restrictions","id":"data-property-restrictions"},{"text":"Data Property Cardinality Restrictions","id":"data-property-cardinality-restrictions"},{"text":"Axioms","id":"axioms"},{"text":"Class Expression Axioms","id":"class-expression-axioms"},{"text":"Object Property Axioms","id":"object-property-axioms"},{"text":"Data Property Axioms","id":"data-property-axioms"},{"text":"Datatype Definitions","id":"datatype-definitions"},{"text":"Keys","id":"keys"},{"text":"Assertions","id":"assertions"},{"text":"SWRL Rules","id":"swrl-rules"}]},"/main/1.2.3/index.html":{"text":"(Version 1.2.3) owl-cli is a command line tool for ontology engineering. It targets the Web Ontology Language (OWL 2) and RDF. You can generate a diagram for an OWL ontology with the diagram command read any RDF document in RDF/Turtle, RDF/XML, RDF N-Triples or N3 format and write it in configurable, pretty-printed RDF/Turtle or one of the other formats using the write command perform OWL DL reasoning on an input ontology using the infer command You can find the source code on Github. Things you will need to have installed to run owl-cli: Graphviz for the generation of diagrams. Install in Windows (using Chocolatey): choco install graphviz Install in MacOs (using Brew): brew install graphviz Install in Ubuntu/Debian Linux: apt install graphviz Download the pre-built binary for your platform: owl-x86_64-windows-1.2.3.exe owl-x86_64-apple-darwin-1.2.3 owl-x86_64-linux-1.2.3 For other platforms or architectures, please use the executable .jar file: owl-cli-1.2.3.jar. This requires Java (OpenJDK) 17 or newer. Rename the binary to owl.exe (Windows) or owl (MacOs/Linux), put it in your favorite directory and add this directory to the PATH environment variable: Windows: setx /M path \"%path%;C:\\your\\path\\here\\\" MacOs/Linux: echo 'export PATH=/your/path/here:$PATH' >> ~/.bashrc; source ~/.bashrc If using the executable .jar file, the following commands will make the jar available as owl command as well. This works in MacOs and Linux. curl -L -o ~/.local/share/owl-cli/owl-cli.jar --create-dirs https://github.com/atextor/owl-cli/releases/download/v1.2.3/owl-cli-1.2.3.jar echo 'function owl() { java -jar ~/.local/share/owl-cli/owl-cli.jar $*; }' >> ~/.bashrc source ~/.bashrc After installation, you can use the owl command: See Usage for more information. For building the executable JAR file for owl-cli, you need Java 17. We recommend installation of the GraalVM-based JDK 17 using SDKMAN!. Run the following commands: # The following commands install SDKMAN!. If you have it installed already, you can skip it. curl -sL https://get.sdkman.io | bash echo sdkman_auto_answer=true > $HOME/.sdkman/etc/config echo sdkman_auto_selfupdate=true >> $HOME/.sdkman/etc/config source $HOME/.sdkman/bin/sdkman-init.sh # Use SDKMAN! to install JDK sdk install java 22.3.1.r17-grl sdk use java 22.3.1.r17-grl # Build the project git clone https://github.com/atextor/owl-cli.git cd owl-cli ./gradlew This will build cli/build/libs/owl-cli-snapshot.jar, which you then can install locally: mkdir -p ~/.local/share/owl-cli cp cli/build/libs/owl-cli-snapshot.jar !$/owl-cli.jar echo 'function owl() { java -jar ~/.local/share/owl-cli/owl-cli.jar $*; }' >> ~/.bashrc source ~/.bashrc After that, you can use the owl command: See Usage for more information. For building the owl-cli native binary, GraalVM is used. As Java 15+ source features are used, a JDK 17-based GraalVM version is required. For calling GraalVM’s native-image command, the gradle build relies on the install locations as used by SDKMAN!. The following instructions assume a BASH shell. On MacOs and Linux this is the default shell; on Windows you would have to use e.g. Git Bash or WSL2. Also on Windows, you will need to install Microsoft Visual C++. Please follow the GraalVM installation instructions. Run the following commands: # The following commands install SDKMAN!. If you have it installed already, # you can skip it. # Ubuntu only: SDKMAN! installation requires zip/unzip: sudo apt-get install zip unzip # Windows only: SDKMAN! installation requires zip/unzip: choco install zip choco install unzip # Install SDKMAN! curl -sL https://get.sdkman.io | bash echo sdkman_auto_answer=true > $HOME/.sdkman/etc/config echo sdkman_auto_selfupdate=true >> $HOME/.sdkman/etc/config source $HOME/.sdkman/bin/sdkman-init.sh # Use SDKMAN! to install JDK sdk install java 22.3.1.r17-grl sdk use java 22.3.1.r17-grl # Use GraalVMs update tool to install the native-image command gu install native-image # Ubuntu only: Install build dependencies sudo apt-get install -y build-essential libz-dev # Build the project git clone https://github.com/atextor/owl-cli.git cd owl-cli ./gradlew nativeImage This will build cli/build/bin/owl, which you can put anywhere on your PATH.","title":"owl-cli","component":"main","version":"1.2.3","name":"index","url":"/main/1.2.3/index.html","titles":[{"text":"Installation","id":"installation"},{"text":"Requirements","id":"requirements"},{"text":"Download and Install owl-cli","id":"download-and-install-owl-cli"},{"text":"Building from Source","id":"building-from-source"},{"text":"Building the executable JAR from source","id":"building-executable-jar"},{"text":"Building the native image (executable binary) from source","id":"building-native-image"}]},"/main/1.2.3/release-notes.html":{"text":"Changes in write command: Special characters in the URIs are serialized correctly (using Jena RIOT); if characters are invalid in a local name, the full URI is printed. The longest available prefixes are used. Change in write command: Dashes, underscores and full stops in the name part of local names are not escaped any more. Both variants are valid, but reading RDF/Turtle is easier without the escapes. Bugfix in write command: Dashes in the prefix part of local names are not escaped any more Adds the infer command to perform OWL DL reasoning on an input ontology. Bugfixes in write command: Local names (curies) with escaped special characters are correctly parsed now; local names and literals are correctly escaped when writing. Adds the write command to read RDF files in multiple formats and write them out. When choosing RDF/Turtle as output format, the output is pretty-printed and formatting can be controlled. This is the first released version. It supports the diagram command to automatically generate diagrams from OWL ontologies.","title":"Release Notes","component":"main","version":"1.2.3","name":"release-notes","url":"/main/1.2.3/release-notes.html","titles":[{"text":"Version 1.2.3","id":"version-1-2-3"},{"text":"Version 1.2.2","id":"version-1-2-2"},{"text":"Version 1.2.1","id":"version-1-2-1"},{"text":"Version 1.2.0","id":"version-1-2-0"},{"text":"Version 1.1.0","id":"version-1-1-0"},{"text":"Version 1.0.0","id":"version-1-0-0"}]},"/main/1.2.3/usage.html":{"text":"Although the package is called owl-cli, the command you invoke is called owl. You can call the built-in overview of commands and arguments via --help: Usage: Usage: owl [-v] [--help] [--version] [COMMAND] Description: Command line tool for ontology engineering Options: --help Show short help -v, --verbose Specify multiple -v options to increase verbosity, e.g. use `-v`, `-vv` or `-vvv` for more details --version Show current version Commands: ... Other than the general help, you give one argument, the command, which will take its own arguments, for example: owl diagram --format png Commands that take ontology files as an input support all formats that are supported by OWL API, notably RDF/Turtle, RDF/XML, OWL/XML and OWL Functional Syntax. The diagram command takes an OWL ontology as input and generates an automatically layouted diagram for it in the SVG or PNG format. This is implemented by mapping the ontology’s axioms into a graph description in the Graphviz language, which is passed to its dot layouting engine. Attributes such as fonts can be customized using arguments. As no standardized graphical notation for OWL exists, the diagram notation used here is described in detail on a separate page: Diagram Notation. General usage: owl diagram [options] input [output], where input can be either an ontology file or - (which means: read from standard in) and output can be either an ontology file or - (which means: write to standard out). If output is not given, the output filename is the input filename with its file extension changed, e.g. myontology.ttl → myontology.svg. If input is - and output is not given, the output is set to standard out. Table 1. diagram Command Options Option Description Default Notes --direction Diagram layout direction left_to_right Possible values: [top_to_bottom, left_to_right] --dotbinary Path to dot binary dot By default, dot is searched for in your $PATH --fontname Default font Verdana --fontsize Default font size 12 --format Output file format svg Possible values: [png, svg] --nodefontname Font for nodes Verdana --nodefontsize Font size for nodes Verdana --nodemargin The margin to render inside of nodes 0.05,0.0 See the Graphviz documentation for more information --nodeshape Node shape box See the Graphviz documentation for more information --nodestyle Node style rounded See the Graphviz documentation for more information --fgcolor Color for boxes, fonts and edges white See the Graphviz documentation for more information --bgcolor Background color for the generated diagram white See the Graphviz documentation for more information Simple invocation with default arguments: # Will create myontology.svg owl diagram myontology.ttl Invocation where the output is specified as standard out and piped to convert to create a different format: owl diagram myontology.ttl - | convert - myontology.jpg Invocation where an ontology is downloaded, some terms are filtered and then piped to owl diagram: curl http://www.ontologydesignpatterns.org/cp/owl/partof.owl | \\ grep -v 'comment|cpannotation|versionInfo' | owl diagram - partof.svg The write command takes any RDF file in RDF/Turtle, RDF/XML, RDF N-Triples or N3 format as input and writes it out in any of those formats. When writing RDF/Turtle, the formatting of the resulting output can be configured extensively, as this makes use of the turtle-formatter library. General usage: owl write [options] input [output], where input can be either an RDF file, a URL (starting with http or https) or - (which means: read from standard in) and output can be either an RDF file or - (which means: write to standard out). If output is not given, the output filename is the input filename with its file extension changed, e.g. myontology.nt → myontology.ttl. If input is - or a URL and output is not given, the output is set to standard out. Table 2. write Command Options Option Description Default Notes -o, --output Output file format turtle Possible values: [turtle, rdfxml, ntriple, n3] -i, --input Input file format turtle Possible values: [turtle, rdfxml, ntriple, n3] -p, --prefix Prefix with corresponding URI to add as @prefix when serializing Turtle. This can be given multiple times, for multiple prefixes. You can specify a well-known prefix (currently: rdf, rdfs, xsd, owl, dcterms), e.g. -prdf or --prefix=rdf or any other prefix with its url: -pfoo=http://example.com/ or --prefix=foo=http://example.com/. To set the empty prefix, use -p==http://example.com/ or --prefix==http://example.com. --prefixAlign Alignment of @prefix statements off Possible values: [left, off, right] --encoding Output encoding utf_8 Possible values: [latin1, utf_16_be, utf_16_le, utf_8, utf_8_bom] --doubleFormat Defines how double numbers are formatted 0.####E0 See here for more information on the format --endOfLine End of line style lf Possible values: [cr, crlf, lf] --indent Indent style space Possible values: [tab, space]. Note that when choosing tab, alignPredicates and alignObjects are automatically treated as false. --firstPredicateInNewLine Write first predicate in new line of block Switched off by default --writeRdfType Write rdf:type instead of a Switched off by default --useCommaByDefault Use commas for multiple objects Switched off by default --noCommaForPredicate Use no commas for multiple objects for this predicate This can be given multiple times. --useLongLiterals Use long form for literals, e.g. \"5\"^^xsd:integer instead of 5 Switched off by default --alignObjects Align objects for same predicates Switched off by default --alignPredicates Align predicates for same subjects Switched off by default --continuationIndentSize Indentation size after forced line wraps 4 --doNotInsertFinalNewline Do not insert newline at end of file Switched off by default --indentSize Indentation size in spaces 2 --keepUnusedPrefixes Keeps prefixes that are not part of any statement Switched off by default --prefixOrder Sort order for prefixes (if they appear in a model) [rdf, rdfs, xsd, owl] Add this switch multiple times, once for each prefix, in the desired order --subjectOrder Sort order for subjects by type (if they appear in a model) [rdfs:Class, owl:Ontology, owl:Class, rdf:Property, owl:ObjectProperty, owl:DatatypeProperty, owl:AnnotationProperty, owl:NamedIndividual, owl:AllDifferent, owl:Axiom] Add this switch multiple times, once for each subject type, in the desired order --predicateOrder Sort order for predicates (if they appear on a subject) [rdf:type, rdfs:label, rdfs:comment, dcterms:description] Add this switch multiple times, once for each predicate, in the desired order --objectOrder Sort order for objects [owl:NamedIndividual, owl:ObjectProperty, owl:DatatypeProperty, owl:AnnotationProperty, owl:FunctionalProperty, owl:InverseFunctionalProperty, owl:TransitiveProperty, owl:SymmetricProperty, owl:AsymmetricProperty, owl:ReflexiveProperty, owl:IrreflexiveProperty] Add this switch multiple times, once for each object type, in the desired order --anonymousNodeIdPattern Name pattern for blank node IDs _:gen0 A 0 inside the pattern will be replace with the index of the respective blank node Simple invocation with default arguments: # Read myontology.ttl and print it in formatted Turtle format owl write myontology.ttl # Read myontology.owl in RDF/XML format and print it in formatted Turtle format, writing output.ttl owl write -i rdfxml myontology.owl output.ttl # Read myontology.n3 in N3 format and print it in formatted Turtle format to stdout owl write -i n3 myontology.n3 # Read myontology.nt in N-Triples format and print it in RDF/XML format to stdout owl write -i ntriple -o rdfxml myontology.nt Read an N-Triples file and write formatted Turtle, while also configuring which prefixes should be used: owl write -prdf -powl -pxsd -p'ex=http://example.com#' -i ntriple myontology.nt Read a Turtle file and print it out, while configuring the output’s formatting and prefix order: owl write --indentSize 4 --writeRdfType --prefixOrder owl --prefixOrder rdf myontology.turtle Read a remote ontology in RDF/XML format and print it in formatted Turtle format: owl write -i rdfxml 'http://www.ontologydesignpatterns.org/cp/owl/partof.owl' The infer command takes an OWL ontology as input and performs OWL 2 DL reasoning on it. Reasoning is done using the Openllet reasoner. General usage: owl infer input [output], where input can be either an ontology file, an URL or - (which means: read from standard in) and output can be either an ontology file or - (which means: write to standard out). If input is a file and output is not given, the input file is overwritten with the inferenced result. If input is - and output is not given, the output is set to standard out. Perform reasoning on the input ontology and write results to stdout: owl infer ontology.ttl -","title":"Usage","component":"main","version":"1.2.3","name":"usage","url":"/main/1.2.3/usage.html","titles":[{"text":"diagram Command","id":"diagram-command"},{"text":"General Usage","id":"diagram-usage"},{"text":"Options","id":"diagram-options"},{"text":"Example Usage","id":"diagram-example-usage"},{"text":"write Command","id":"write-command"},{"text":"General Usage","id":"write-usage"},{"text":"Options","id":"write-options"},{"text":"Example Usage","id":"write-example-usage"},{"text":"infer Command","id":"infer-command"},{"text":"General Usage","id":"infer-usage"},{"text":"Example Usage","id":"infer-example-usage"}]},"/main/1.2.4/diagram-notation.html":{"text":"This page describes the graphical notation for ontology diagrams generated by owl-cli. There is no standard diagram notation for OWL, but a number of tools provide their own notation. Popular options are the Protégé plugins OWLViz and OntoGraf, as well as the graphical notation of Topbraid Composer. Most notations have a strong focus on class and instance relationships, which is well-suited for visualizing this particular kind of ontology. However, other types of axioms, in particular more complex class expressions, are usually not represented. For this reason, during the writing of the PhD thesis, a more general graphical notation for ontologies was developed. The notation by owl-cli is influenced by the following other notations for OWL ontologies: The symbols and colors for classes, properties and data types as popularized by the Protégé ontology editor and also used by Topbraid Composer. The notation from the PhD thesis (as shown on pages 43 and 44), but with less focus on Description Logics notation and instead using the expressions syntax from Protégé. Arrows from UML (hollow arrow for inheritance, solid arrow for relations). Representation of OWL class restrictions and other elements in the specification of the OMG Ontology Definition Metamodel 1.1, cf. for example Figures 14.25, 14.26 and 14.27. The symbol for disjoint unions that is used in VOWL. The notation was designed with the following goals in mind: It must be possible to represent all OWL axioms in a meaningful way. The diagrams are used mainly for visualizing in documents, not necessarily for interactively editing an ontology. The diagram should be understandable for people familiar with the Protégé editor, because it is probably the most popular ontology editor. The semantics should be unambiguous from the visual representation: For example, using a UML-like class diagram for an OWL class that includes properties in its box like class attributes in UML is not self-explanatory: Are the properties restrictions on the class (existential? universal? both?), is the class the domain of the properties? Both have very different meanings than what a UML-like representation suggests. The following sections describe the graphical notation using examples. All diagrams on this page were generated with owl-cli. Each diagram links to the RDF/Turtle file it was generated from. Table 1. Mapping Syntax for OWL Element Types OWL Element Description Logics Notation Diagram Class( ) ObjectProperty( ) DataProperty( ) AnnotationProperty( ) no notation NamedIndividual( ) Datatype( ) no notation This section is aligned to the corresponding section in the OWL 2 Specification. Table 2. Mapping Syntax for Data Ranges OWL Expression Description Logics Notation Diagram DataIntersectionOf( ) DataUnionOf( ) DataComplementOf( ) DataOneOf( ) DatatypeRestriction( int minExclusive 4 maxInclusive 10 ) no notation The outline of this section is aligned to the corresponding section in the OWL 2 Specification. Table 3. Mapping Syntax for Propositional Connectives and Enumeration of Individuals OWL Expression Description Logics Notation Diagram ObjectIntersectionOf( ) ObjectUnionOf( ) ObjectComplementOf( ) ObjectOneOf( ) Table 4. Mapping Syntax for Object Property Restrictions OWL Expression Description Logics Notation Diagram ObjectSomeValuesFrom( ) ObjectAllValuesFrom( ) ObjectHasValue( ) ObjectInverseOf( ) ObjectHasSelf( ) Table 5. Mapping Syntax for Object Property Cardinality Restrictions OWL Expression Description Logics Notation Diagram ObjectMinCardinality( ) ObjectMinCardinality( ) ObjectMaxCardinality( ) ObjectMaxCardinality( ) ObjectExactCardinality( ) ObjectExactCardinality( ) Table 6. Mapping Syntax for Data Property Restrictions OWL Expression Description Logics Notation Diagram DataSomeValuesFrom( ) DataAllValuesFrom( ) DataHasValue( ) Table 7. Mapping Syntax for Data Property Cardinality Restrictions OWL Expression Description Logics Notation Diagram DataMinCardinality( ) DataMaxCardinality( ) DataExactCardinality( ) The outline of this section is aligned to the corresponding section in the OWL 2 Specification. Table 8. Mapping Syntax for Class Expression Axioms OWL Axiom Description Logics Notation Diagram SubClassOf( ) EquivalentClasses( ) DisjointClasses( ) DisjointUnion( ) Table 9. Mapping Syntax for Object Property Axioms OWL Axiom Description Logics Notation Diagram SubObjectPropertyOf( ) ObjectPropertyChain( ) EquivalentObjectProperties( ) DisjointObjectProperties( ) InverseObjectProperties( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) FunctionalObjectProperty( ) InverseFunctionalObjectProperty( ) ReflexiveObjectProperty( ) IrreflexiveObjectProperty( ) SymmetricObjectProperty( ) AsymmetricObjectProperty( ) TransitiveObjectProperty( ) Table 10. Mapping Syntax for Data Property Axioms OWL Axiom Description Logics Notation Diagram SubDataPropertyOf( ) EquivalentDataProperties( ) DisjointDataProperties( ) DataPropertyDomain( ) DataPropertyRange( ) FunctionalDataProperty( ) Table 11. Mapping Syntax for Datatype Definitions OWL Axiom Description Logics Notation Diagram DatatypeDefinition( ) no notation Table 12. Mapping Syntax for Keys OWL Axiom Description Logics Notation Diagram HasKeys( ) no notation Table 13. Mapping Syntax for Assertions OWL Axiom Description Logics Notation Diagram SameIndividuals( ) DifferentIndividuals( ) ClassAssertion( ) ObjectPropertyAssertion( ) NegativeObjectPropertyAssertion( ) DataPropertyAssertion( ) NegativeDataPropertyAssertion( ) Rules defined in the Semantic Web Rule Language (SWRL) can be embedded in an OWL ontology. Rules are rendered as described in Human Readable Syntax, and are linked with the ontology entities they refer to. The following table shows rendering examples for the different kinds of rule atoms. Table 14. Mapping Syntax for SWRL Rules Atom Type Diagram Class Class with Expression Object Property Data Property, Data Range Data Property, Builtin","title":"OWL Diagram Notation","component":"main","version":"1.2.4","name":"diagram-notation","url":"/main/1.2.4/diagram-notation.html","titles":[{"text":"Introduction","id":"introduction"},{"text":"Element Types","id":"element-types"},{"text":"Data Ranges","id":"data-ranges"},{"text":"Class Expressions","id":"class-expressions"},{"text":"Propositional Connectives and Enumeration of Individuals","id":"propositional-connectives-and-enumeration-of-individuals"},{"text":"Object Property Restrictions","id":"object-property-restrictions"},{"text":"Object Property Cardinality Restrictions","id":"object-property-cardinality-restrictions"},{"text":"Data Property Restrictions","id":"data-property-restrictions"},{"text":"Data Property Cardinality Restrictions","id":"data-property-cardinality-restrictions"},{"text":"Axioms","id":"axioms"},{"text":"Class Expression Axioms","id":"class-expression-axioms"},{"text":"Object Property Axioms","id":"object-property-axioms"},{"text":"Data Property Axioms","id":"data-property-axioms"},{"text":"Datatype Definitions","id":"datatype-definitions"},{"text":"Keys","id":"keys"},{"text":"Assertions","id":"assertions"},{"text":"SWRL Rules","id":"swrl-rules"}]},"/main/1.2.4/index.html":{"text":"(Version 1.2.4) owl-cli is a command line tool for ontology engineering. It targets the Web Ontology Language (OWL 2) and RDF. You can generate a diagram for an OWL ontology with the diagram command read any RDF document in RDF/Turtle, RDF/XML, RDF N-Triples or N3 format and write it in configurable, pretty-printed RDF/Turtle or one of the other formats using the write command perform OWL DL reasoning on an input ontology using the infer command You can find the source code on Github. Things you will need to have installed to run owl-cli: Graphviz for the generation of diagrams. Install in Windows (using Chocolatey): choco install graphviz Install in MacOs (using Brew): brew install graphviz Install in Ubuntu/Debian Linux: apt install graphviz Download the pre-built binary for your platform: owl-x86_64-windows-1.2.4.exe owl-x86_64-apple-darwin-1.2.4 owl-x86_64-linux-1.2.4 For other platforms or architectures, please use the executable .jar file: owl-cli-1.2.4.jar. This requires Java (OpenJDK) 17 or newer. Rename the binary to owl.exe (Windows) or owl (MacOs/Linux), put it in your favorite directory and add this directory to the PATH environment variable: Windows: setx /M path \"%path%;C:\\your\\path\\here\\\" MacOs/Linux: echo 'export PATH=/your/path/here:$PATH' >> ~/.bashrc; source ~/.bashrc If using the executable .jar file, the following commands will make the jar available as owl command as well. This works in MacOs and Linux. curl -L -o ~/.local/share/owl-cli/owl-cli.jar --create-dirs https://github.com/atextor/owl-cli/releases/download/v1.2.4/owl-cli-1.2.4.jar echo 'function owl() { java -jar ~/.local/share/owl-cli/owl-cli.jar $*; }' >> ~/.bashrc source ~/.bashrc After installation, you can use the owl command: See Usage for more information. For building the executable JAR file for owl-cli, you need Java 17. We recommend installation of the GraalVM-based JDK 17 using SDKMAN!. Run the following commands: # The following commands install SDKMAN!. If you have it installed already, you can skip it. curl -sL https://get.sdkman.io | bash echo sdkman_auto_answer=true > $HOME/.sdkman/etc/config echo sdkman_auto_selfupdate=true >> $HOME/.sdkman/etc/config source $HOME/.sdkman/bin/sdkman-init.sh # Use SDKMAN! to install JDK sdk install java 17.0.8-graal sdk use java 17.0.8-graal # Build the project git clone https://github.com/atextor/owl-cli.git cd owl-cli ./gradlew This will build cli/build/libs/owl-cli-snapshot.jar, which you then can install locally: mkdir -p ~/.local/share/owl-cli cp cli/build/libs/owl-cli-snapshot.jar !$/owl-cli.jar echo 'function owl() { java -jar ~/.local/share/owl-cli/owl-cli.jar $*; }' >> ~/.bashrc source ~/.bashrc After that, you can use the owl command: See Usage for more information. For building the owl-cli native binary, GraalVM is used. As Java 15+ source features are used, a JDK 17-based GraalVM version is required. For calling GraalVM’s native-image command, the gradle build relies on the install locations as used by SDKMAN!. The following instructions assume a BASH shell. On MacOs and Linux this is the default shell; on Windows you would have to use e.g. Git Bash or WSL2. Also on Windows, you will need to install Microsoft Visual C++. Please follow the GraalVM installation instructions. Run the following commands: # The following commands install SDKMAN!. If you have it installed already, # you can skip it. # Ubuntu only: SDKMAN! installation requires zip/unzip: sudo apt-get install zip unzip # Windows only: SDKMAN! installation requires zip/unzip: choco install zip choco install unzip # Install SDKMAN! curl -sL https://get.sdkman.io | bash echo sdkman_auto_answer=true > $HOME/.sdkman/etc/config echo sdkman_auto_selfupdate=true >> $HOME/.sdkman/etc/config source $HOME/.sdkman/bin/sdkman-init.sh # Use SDKMAN! to install JDK sdk install java 17.0.8-graal sdk use java 17.0.8-graal # Use GraalVMs update tool to install the native-image command gu install native-image # Ubuntu only: Install build dependencies sudo apt-get install -y build-essential libz-dev # Build the project git clone https://github.com/atextor/owl-cli.git cd owl-cli ./gradlew nativeImage This will build cli/build/bin/owl, which you can put anywhere on your PATH.","title":"owl-cli","component":"main","version":"1.2.4","name":"index","url":"/main/1.2.4/index.html","titles":[{"text":"Installation","id":"installation"},{"text":"Requirements","id":"requirements"},{"text":"Download and Install owl-cli","id":"download-and-install-owl-cli"},{"text":"Building from Source","id":"building-from-source"},{"text":"Building the executable JAR from source","id":"building-executable-jar"},{"text":"Building the native image (executable binary) from source","id":"building-native-image"}]},"/main/1.2.4/release-notes.html":{"text":"Changes in write command: Triple-quotes strings that happen to end with a quote are escaped correctly. Changes in write command: Special characters in the URIs are serialized correctly (using Jena RIOT); if characters are invalid in a local name, the full URI is printed. The longest available prefixes are used. Change in write command: Dashes, underscores and full stops in the name part of local names are not escaped any more. Both variants are valid, but reading RDF/Turtle is easier without the escapes. Bugfix in write command: Dashes in the prefix part of local names are not escaped any more Adds the infer command to perform OWL DL reasoning on an input ontology. Bugfixes in write command: Local names (curies) with escaped special characters are correctly parsed now; local names and literals are correctly escaped when writing. Adds the write command to read RDF files in multiple formats and write them out. When choosing RDF/Turtle as output format, the output is pretty-printed and formatting can be controlled. This is the first released version. It supports the diagram command to automatically generate diagrams from OWL ontologies.","title":"Release Notes","component":"main","version":"1.2.4","name":"release-notes","url":"/main/1.2.4/release-notes.html","titles":[{"text":"Version 1.2.4","id":"version-1-2-4"},{"text":"Version 1.2.3","id":"version-1-2-3"},{"text":"Version 1.2.2","id":"version-1-2-2"},{"text":"Version 1.2.1","id":"version-1-2-1"},{"text":"Version 1.2.0","id":"version-1-2-0"},{"text":"Version 1.1.0","id":"version-1-1-0"},{"text":"Version 1.0.0","id":"version-1-0-0"}]},"/main/1.2.4/usage.html":{"text":"Although the package is called owl-cli, the command you invoke is called owl. You can call the built-in overview of commands and arguments via --help: Usage: Usage: owl [-v] [--help] [--version] [COMMAND] Description: Command line tool for ontology engineering Options: --help Show short help -v, --verbose Specify multiple -v options to increase verbosity, e.g. use `-v`, `-vv` or `-vvv` for more details --version Show current version Commands: ... Other than the general help, you give one argument, the command, which will take its own arguments, for example: owl diagram --format png Commands that take ontology files as an input support all formats that are supported by OWL API, notably RDF/Turtle, RDF/XML, OWL/XML and OWL Functional Syntax. The diagram command takes an OWL ontology as input and generates an automatically layouted diagram for it in the SVG or PNG format. This is implemented by mapping the ontology’s axioms into a graph description in the Graphviz language, which is passed to its dot layouting engine. Attributes such as fonts can be customized using arguments. As no standardized graphical notation for OWL exists, the diagram notation used here is described in detail on a separate page: Diagram Notation. General usage: owl diagram [options] input [output], where input can be either an ontology file or - (which means: read from standard in) and output can be either an ontology file or - (which means: write to standard out). If output is not given, the output filename is the input filename with its file extension changed, e.g. myontology.ttl → myontology.svg. If input is - and output is not given, the output is set to standard out. Table 1. diagram Command Options Option Description Default Notes --direction Diagram layout direction left_to_right Possible values: [top_to_bottom, left_to_right] --dotbinary Path to dot binary dot By default, dot is searched for in your $PATH --fontname Default font Verdana --fontsize Default font size 12 --format Output file format svg Possible values: [png, svg] --nodefontname Font for nodes Verdana --nodefontsize Font size for nodes Verdana --nodemargin The margin to render inside of nodes 0.05,0.0 See the Graphviz documentation for more information --nodeshape Node shape box See the Graphviz documentation for more information --nodestyle Node style rounded See the Graphviz documentation for more information --fgcolor Color for boxes, fonts and edges white See the Graphviz documentation for more information --bgcolor Background color for the generated diagram white See the Graphviz documentation for more information Simple invocation with default arguments: # Will create myontology.svg owl diagram myontology.ttl Invocation where the output is specified as standard out and piped to convert to create a different format: owl diagram myontology.ttl - | convert - myontology.jpg Invocation where an ontology is downloaded, some terms are filtered and then piped to owl diagram: curl http://www.ontologydesignpatterns.org/cp/owl/partof.owl | \\ grep -v 'comment|cpannotation|versionInfo' | owl diagram - partof.svg The write command takes any RDF file in RDF/Turtle, RDF/XML, RDF N-Triples or N3 format as input and writes it out in any of those formats. When writing RDF/Turtle, the formatting of the resulting output can be configured extensively, as this makes use of the turtle-formatter library. General usage: owl write [options] input [output], where input can be either an RDF file, a URL (starting with http or https) or - (which means: read from standard in) and output can be either an RDF file or - (which means: write to standard out). If output is not given, the output filename is the input filename with its file extension changed, e.g. myontology.nt → myontology.ttl. If input is - or a URL and output is not given, the output is set to standard out. Table 2. write Command Options Option Description Default Notes -o, --output Output file format turtle Possible values: [turtle, rdfxml, ntriple, n3] -i, --input Input file format turtle Possible values: [turtle, rdfxml, ntriple, n3] -p, --prefix Prefix with corresponding URI to add as @prefix when serializing Turtle. This can be given multiple times, for multiple prefixes. You can specify a well-known prefix (currently: rdf, rdfs, xsd, owl, dcterms), e.g. -prdf or --prefix=rdf or any other prefix with its url: -pfoo=http://example.com/ or --prefix=foo=http://example.com/. To set the empty prefix, use -p==http://example.com/ or --prefix==http://example.com. --prefixAlign Alignment of @prefix statements off Possible values: [left, off, right] --encoding Output encoding utf_8 Possible values: [latin1, utf_16_be, utf_16_le, utf_8, utf_8_bom] --doubleFormat Defines how double numbers are formatted 0.####E0 See here for more information on the format --endOfLine End of line style lf Possible values: [cr, crlf, lf] --indent Indent style space Possible values: [tab, space]. Note that when choosing tab, alignPredicates and alignObjects are automatically treated as false. --firstPredicateInNewLine Write first predicate in new line of block Switched off by default --writeRdfType Write rdf:type instead of a Switched off by default --useCommaByDefault Use commas for multiple objects Switched off by default --noCommaForPredicate Use no commas for multiple objects for this predicate This can be given multiple times. --useLongLiterals Use long form for literals, e.g. \"5\"^^xsd:integer instead of 5 Switched off by default --alignObjects Align objects for same predicates Switched off by default --alignPredicates Align predicates for same subjects Switched off by default --continuationIndentSize Indentation size after forced line wraps 4 --doNotInsertFinalNewline Do not insert newline at end of file Switched off by default --indentSize Indentation size in spaces 2 --keepUnusedPrefixes Keeps prefixes that are not part of any statement Switched off by default --prefixOrder Sort order for prefixes (if they appear in a model) [rdf, rdfs, xsd, owl] Add this switch multiple times, once for each prefix, in the desired order --subjectOrder Sort order for subjects by type (if they appear in a model) [rdfs:Class, owl:Ontology, owl:Class, rdf:Property, owl:ObjectProperty, owl:DatatypeProperty, owl:AnnotationProperty, owl:NamedIndividual, owl:AllDifferent, owl:Axiom] Add this switch multiple times, once for each subject type, in the desired order --predicateOrder Sort order for predicates (if they appear on a subject) [rdf:type, rdfs:label, rdfs:comment, dcterms:description] Add this switch multiple times, once for each predicate, in the desired order --objectOrder Sort order for objects [owl:NamedIndividual, owl:ObjectProperty, owl:DatatypeProperty, owl:AnnotationProperty, owl:FunctionalProperty, owl:InverseFunctionalProperty, owl:TransitiveProperty, owl:SymmetricProperty, owl:AsymmetricProperty, owl:ReflexiveProperty, owl:IrreflexiveProperty] Add this switch multiple times, once for each object type, in the desired order --anonymousNodeIdPattern Name pattern for blank node IDs _:gen0 A 0 inside the pattern will be replace with the index of the respective blank node Simple invocation with default arguments: # Read myontology.ttl and print it in formatted Turtle format owl write myontology.ttl # Read myontology.owl in RDF/XML format and print it in formatted Turtle format, writing output.ttl owl write -i rdfxml myontology.owl output.ttl # Read myontology.n3 in N3 format and print it in formatted Turtle format to stdout owl write -i n3 myontology.n3 # Read myontology.nt in N-Triples format and print it in RDF/XML format to stdout owl write -i ntriple -o rdfxml myontology.nt Read an N-Triples file and write formatted Turtle, while also configuring which prefixes should be used: owl write -prdf -powl -pxsd -p'ex=http://example.com#' -i ntriple myontology.nt Read a Turtle file and print it out, while configuring the output’s formatting and prefix order: owl write --indentSize 4 --writeRdfType --prefixOrder owl --prefixOrder rdf myontology.turtle Read a remote ontology in RDF/XML format and print it in formatted Turtle format: owl write -i rdfxml 'http://www.ontologydesignpatterns.org/cp/owl/partof.owl' The infer command takes an OWL ontology as input and performs OWL 2 DL reasoning on it. Reasoning is done using the Openllet reasoner. General usage: owl infer input [output], where input can be either an ontology file, an URL or - (which means: read from standard in) and output can be either an ontology file or - (which means: write to standard out). If input is a file and output is not given, the input file is overwritten with the inferenced result. If input is - and output is not given, the output is set to standard out. Perform reasoning on the input ontology and write results to stdout: owl infer ontology.ttl -","title":"Usage","component":"main","version":"1.2.4","name":"usage","url":"/main/1.2.4/usage.html","titles":[{"text":"diagram Command","id":"diagram-command"},{"text":"General Usage","id":"diagram-usage"},{"text":"Options","id":"diagram-options"},{"text":"Example Usage","id":"diagram-example-usage"},{"text":"write Command","id":"write-command"},{"text":"General Usage","id":"write-usage"},{"text":"Options","id":"write-options"},{"text":"Example Usage","id":"write-example-usage"},{"text":"infer Command","id":"infer-command"},{"text":"General Usage","id":"infer-usage"},{"text":"Example Usage","id":"infer-example-usage"}]},"/main/1.2.5/diagram-notation.html":{"text":"This page describes the graphical notation for ontology diagrams generated by owl-cli. There is no standard diagram notation for OWL, but a number of tools provide their own notation. Popular options are the Protégé plugins OWLViz and OntoGraf, as well as the graphical notation of Topbraid Composer. Most notations have a strong focus on class and instance relationships, which is well-suited for visualizing this particular kind of ontology. However, other types of axioms, in particular more complex class expressions, are usually not represented. For this reason, during the writing of the PhD thesis, a more general graphical notation for ontologies was developed. The notation by owl-cli is influenced by the following other notations for OWL ontologies: The symbols and colors for classes, properties and data types as popularized by the Protégé ontology editor and also used by Topbraid Composer. The notation from the PhD thesis (as shown on pages 43 and 44), but with less focus on Description Logics notation and instead using the expressions syntax from Protégé. Arrows from UML (hollow arrow for inheritance, solid arrow for relations). Representation of OWL class restrictions and other elements in the specification of the OMG Ontology Definition Metamodel 1.1, cf. for example Figures 14.25, 14.26 and 14.27. The symbol for disjoint unions that is used in VOWL. The notation was designed with the following goals in mind: It must be possible to represent all OWL axioms in a meaningful way. The diagrams are used mainly for visualizing in documents, not necessarily for interactively editing an ontology. The diagram should be understandable for people familiar with the Protégé editor, because it is probably the most popular ontology editor. The semantics should be unambiguous from the visual representation: For example, using a UML-like class diagram for an OWL class that includes properties in its box like class attributes in UML is not self-explanatory: Are the properties restrictions on the class (existential? universal? both?), is the class the domain of the properties? Both have very different meanings than what a UML-like representation suggests. The following sections describe the graphical notation using examples. All diagrams on this page were generated with owl-cli. Each diagram links to the RDF/Turtle file it was generated from. Table 1. Mapping Syntax for OWL Element Types OWL Element Description Logics Notation Diagram Class( ) ObjectProperty( ) DataProperty( ) AnnotationProperty( ) no notation NamedIndividual( ) Datatype( ) no notation This section is aligned to the corresponding section in the OWL 2 Specification. Table 2. Mapping Syntax for Data Ranges OWL Expression Description Logics Notation Diagram DataIntersectionOf( ) DataUnionOf( ) DataComplementOf( ) DataOneOf( ) DatatypeRestriction( int minExclusive 4 maxInclusive 10 ) no notation The outline of this section is aligned to the corresponding section in the OWL 2 Specification. Table 3. Mapping Syntax for Propositional Connectives and Enumeration of Individuals OWL Expression Description Logics Notation Diagram ObjectIntersectionOf( ) ObjectUnionOf( ) ObjectComplementOf( ) ObjectOneOf( ) Table 4. Mapping Syntax for Object Property Restrictions OWL Expression Description Logics Notation Diagram ObjectSomeValuesFrom( ) ObjectAllValuesFrom( ) ObjectHasValue( ) ObjectInverseOf( ) ObjectHasSelf( ) Table 5. Mapping Syntax for Object Property Cardinality Restrictions OWL Expression Description Logics Notation Diagram ObjectMinCardinality( ) ObjectMinCardinality( ) ObjectMaxCardinality( ) ObjectMaxCardinality( ) ObjectExactCardinality( ) ObjectExactCardinality( ) Table 6. Mapping Syntax for Data Property Restrictions OWL Expression Description Logics Notation Diagram DataSomeValuesFrom( ) DataAllValuesFrom( ) DataHasValue( ) Table 7. Mapping Syntax for Data Property Cardinality Restrictions OWL Expression Description Logics Notation Diagram DataMinCardinality( ) DataMaxCardinality( ) DataExactCardinality( ) The outline of this section is aligned to the corresponding section in the OWL 2 Specification. Table 8. Mapping Syntax for Class Expression Axioms OWL Axiom Description Logics Notation Diagram SubClassOf( ) EquivalentClasses( ) DisjointClasses( ) DisjointUnion( ) Table 9. Mapping Syntax for Object Property Axioms OWL Axiom Description Logics Notation Diagram SubObjectPropertyOf( ) ObjectPropertyChain( ) EquivalentObjectProperties( ) DisjointObjectProperties( ) InverseObjectProperties( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) FunctionalObjectProperty( ) InverseFunctionalObjectProperty( ) ReflexiveObjectProperty( ) IrreflexiveObjectProperty( ) SymmetricObjectProperty( ) AsymmetricObjectProperty( ) TransitiveObjectProperty( ) Table 10. Mapping Syntax for Data Property Axioms OWL Axiom Description Logics Notation Diagram SubDataPropertyOf( ) EquivalentDataProperties( ) DisjointDataProperties( ) DataPropertyDomain( ) DataPropertyRange( ) FunctionalDataProperty( ) Table 11. Mapping Syntax for Datatype Definitions OWL Axiom Description Logics Notation Diagram DatatypeDefinition( ) no notation Table 12. Mapping Syntax for Keys OWL Axiom Description Logics Notation Diagram HasKeys( ) no notation Table 13. Mapping Syntax for Assertions OWL Axiom Description Logics Notation Diagram SameIndividuals( ) DifferentIndividuals( ) ClassAssertion( ) ObjectPropertyAssertion( ) NegativeObjectPropertyAssertion( ) DataPropertyAssertion( ) NegativeDataPropertyAssertion( ) Rules defined in the Semantic Web Rule Language (SWRL) can be embedded in an OWL ontology. Rules are rendered as described in Human Readable Syntax, and are linked with the ontology entities they refer to. The following table shows rendering examples for the different kinds of rule atoms. Table 14. Mapping Syntax for SWRL Rules Atom Type Diagram Class Class with Expression Object Property Data Property, Data Range Data Property, Builtin","title":"OWL Diagram Notation","component":"main","version":"1.2.5","name":"diagram-notation","url":"/main/1.2.5/diagram-notation.html","titles":[{"text":"Introduction","id":"introduction"},{"text":"Element Types","id":"element-types"},{"text":"Data Ranges","id":"data-ranges"},{"text":"Class Expressions","id":"class-expressions"},{"text":"Propositional Connectives and Enumeration of Individuals","id":"propositional-connectives-and-enumeration-of-individuals"},{"text":"Object Property Restrictions","id":"object-property-restrictions"},{"text":"Object Property Cardinality Restrictions","id":"object-property-cardinality-restrictions"},{"text":"Data Property Restrictions","id":"data-property-restrictions"},{"text":"Data Property Cardinality Restrictions","id":"data-property-cardinality-restrictions"},{"text":"Axioms","id":"axioms"},{"text":"Class Expression Axioms","id":"class-expression-axioms"},{"text":"Object Property Axioms","id":"object-property-axioms"},{"text":"Data Property Axioms","id":"data-property-axioms"},{"text":"Datatype Definitions","id":"datatype-definitions"},{"text":"Keys","id":"keys"},{"text":"Assertions","id":"assertions"},{"text":"SWRL Rules","id":"swrl-rules"}]},"/main/1.2.5/index.html":{"text":"(Version 1.2.5) owl-cli is a command line tool for ontology engineering. It targets the Web Ontology Language (OWL 2) and RDF. You can generate a diagram for an OWL ontology with the diagram command read any RDF document in RDF/Turtle, RDF/XML, RDF N-Triples or N3 format and write it in configurable, pretty-printed RDF/Turtle or one of the other formats using the write command perform OWL DL reasoning on an input ontology using the infer command You can find the source code on Github. Things you will need to have installed to run owl-cli: Graphviz for the generation of diagrams. Install in Windows (using Chocolatey): choco install graphviz Install in MacOs (using Brew): brew install graphviz Install in Ubuntu/Debian Linux: apt install graphviz Download the pre-built binary for your platform: owl-x86_64-windows-1.2.5.exe owl-x86_64-apple-darwin-1.2.5 owl-x86_64-linux-1.2.5 For other platforms or architectures, please use the executable .jar file: owl-cli-1.2.5.jar. This requires Java (OpenJDK) 17 or newer. Rename the binary to owl.exe (Windows) or owl (MacOs/Linux), put it in your favorite directory and add this directory to the PATH environment variable: Windows: setx /M path \"%path%;C:\\your\\path\\here\\\" MacOs/Linux: echo 'export PATH=/your/path/here:$PATH' >> ~/.bashrc; source ~/.bashrc If using the executable .jar file, the following commands will make the jar available as owl command as well. This works in MacOs and Linux. curl -L -o ~/.local/share/owl-cli/owl-cli.jar --create-dirs https://github.com/atextor/owl-cli/releases/download/v1.2.5/owl-cli-1.2.5.jar echo 'function owl() { java -jar ~/.local/share/owl-cli/owl-cli.jar $*; }' >> ~/.bashrc source ~/.bashrc After installation, you can use the owl command: See Usage for more information. For building the executable JAR file for owl-cli, you need Java 17. We recommend installation of the GraalVM-based JDK 17 using SDKMAN!. Run the following commands: # The following commands install SDKMAN!. If you have it installed already, you can skip it. curl -sL https://get.sdkman.io | bash echo sdkman_auto_answer=true > $HOME/.sdkman/etc/config echo sdkman_auto_selfupdate=true >> $HOME/.sdkman/etc/config source $HOME/.sdkman/bin/sdkman-init.sh # Use SDKMAN! to install JDK sdk install java 17.0.8-graal sdk use java 17.0.8-graal # Build the project git clone https://github.com/atextor/owl-cli.git cd owl-cli ./gradlew This will build cli/build/libs/owl-cli-snapshot.jar, which you then can install locally: mkdir -p ~/.local/share/owl-cli cp cli/build/libs/owl-cli-snapshot.jar !$/owl-cli.jar echo 'function owl() { java -jar ~/.local/share/owl-cli/owl-cli.jar $*; }' >> ~/.bashrc source ~/.bashrc After that, you can use the owl command: See Usage for more information. For building the owl-cli native binary, GraalVM is used. As Java 15+ source features are used, a JDK 17-based GraalVM version is required. For calling GraalVM’s native-image command, the gradle build relies on the install locations as used by SDKMAN!. The following instructions assume a BASH shell. On MacOs and Linux this is the default shell; on Windows you would have to use e.g. Git Bash or WSL2. Also on Windows, you will need to install Microsoft Visual C++. Please follow the GraalVM installation instructions. Run the following commands: # The following commands install SDKMAN!. If you have it installed already, # you can skip it. # Ubuntu only: SDKMAN! installation requires zip/unzip: sudo apt-get install zip unzip # Windows only: SDKMAN! installation requires zip/unzip: choco install zip choco install unzip # Install SDKMAN! curl -sL https://get.sdkman.io | bash echo sdkman_auto_answer=true > $HOME/.sdkman/etc/config echo sdkman_auto_selfupdate=true >> $HOME/.sdkman/etc/config source $HOME/.sdkman/bin/sdkman-init.sh # Use SDKMAN! to install JDK sdk install java 17.0.8-graal sdk use java 17.0.8-graal # Use GraalVMs update tool to install the native-image command gu install native-image # Ubuntu only: Install build dependencies sudo apt-get install -y build-essential libz-dev # Build the project git clone https://github.com/atextor/owl-cli.git cd owl-cli ./gradlew nativeImage This will build cli/build/bin/owl, which you can put anywhere on your PATH.","title":"owl-cli","component":"main","version":"1.2.5","name":"index","url":"/main/1.2.5/index.html","titles":[{"text":"Installation","id":"installation"},{"text":"Requirements","id":"requirements"},{"text":"Download and Install owl-cli","id":"download-and-install-owl-cli"},{"text":"Building from Source","id":"building-from-source"},{"text":"Building the executable JAR from source","id":"building-executable-jar"},{"text":"Building the native image (executable binary) from source","id":"building-native-image"}]},"/main/1.2.5/release-notes.html":{"text":"Changes in write command: rdf:type used as an object in a triple is not rendered as a any more. Changes in write command: Triple-quotes strings that happen to end with a quote are escaped correctly. Changes in write command: Special characters in the URIs are serialized correctly (using Jena RIOT); if characters are invalid in a local name, the full URI is printed. The longest available prefixes are used. Change in write command: Dashes, underscores and full stops in the name part of local names are not escaped any more. Both variants are valid, but reading RDF/Turtle is easier without the escapes. Bugfix in write command: Dashes in the prefix part of local names are not escaped any more Adds the infer command to perform OWL DL reasoning on an input ontology. Bugfixes in write command: Local names (curies) with escaped special characters are correctly parsed now; local names and literals are correctly escaped when writing. Adds the write command to read RDF files in multiple formats and write them out. When choosing RDF/Turtle as output format, the output is pretty-printed and formatting can be controlled. This is the first released version. It supports the diagram command to automatically generate diagrams from OWL ontologies.","title":"Release Notes","component":"main","version":"1.2.5","name":"release-notes","url":"/main/1.2.5/release-notes.html","titles":[{"text":"Version 1.2.5","id":"version-1-2-5"},{"text":"Version 1.2.4","id":"version-1-2-4"},{"text":"Version 1.2.3","id":"version-1-2-3"},{"text":"Version 1.2.2","id":"version-1-2-2"},{"text":"Version 1.2.1","id":"version-1-2-1"},{"text":"Version 1.2.0","id":"version-1-2-0"},{"text":"Version 1.1.0","id":"version-1-1-0"},{"text":"Version 1.0.0","id":"version-1-0-0"}]},"/main/1.2.5/usage.html":{"text":"Although the package is called owl-cli, the command you invoke is called owl. You can call the built-in overview of commands and arguments via --help: Usage: Usage: owl [-v] [--help] [--version] [COMMAND] Description: Command line tool for ontology engineering Options: --help Show short help -v, --verbose Specify multiple -v options to increase verbosity, e.g. use `-v`, `-vv` or `-vvv` for more details --version Show current version Commands: ... Other than the general help, you give one argument, the command, which will take its own arguments, for example: owl diagram --format png Commands that take ontology files as an input support all formats that are supported by OWL API, notably RDF/Turtle, RDF/XML, OWL/XML and OWL Functional Syntax. The diagram command takes an OWL ontology as input and generates an automatically layouted diagram for it in the SVG or PNG format. This is implemented by mapping the ontology’s axioms into a graph description in the Graphviz language, which is passed to its dot layouting engine. Attributes such as fonts can be customized using arguments. As no standardized graphical notation for OWL exists, the diagram notation used here is described in detail on a separate page: Diagram Notation. General usage: owl diagram [options] input [output], where input can be either an ontology file or - (which means: read from standard in) and output can be either an ontology file or - (which means: write to standard out). If output is not given, the output filename is the input filename with its file extension changed, e.g. myontology.ttl → myontology.svg. If input is - and output is not given, the output is set to standard out. Table 1. diagram Command Options Option Description Default Notes --direction Diagram layout direction left_to_right Possible values: [top_to_bottom, left_to_right] --dotbinary Path to dot binary dot By default, dot is searched for in your $PATH --fontname Default font Verdana --fontsize Default font size 12 --format Output file format svg Possible values: [png, svg] --nodefontname Font for nodes Verdana --nodefontsize Font size for nodes Verdana --nodemargin The margin to render inside of nodes 0.05,0.0 See the Graphviz documentation for more information --nodeshape Node shape box See the Graphviz documentation for more information --nodestyle Node style rounded See the Graphviz documentation for more information --fgcolor Color for boxes, fonts and edges white See the Graphviz documentation for more information --bgcolor Background color for the generated diagram white See the Graphviz documentation for more information Simple invocation with default arguments: # Will create myontology.svg owl diagram myontology.ttl Invocation where the output is specified as standard out and piped to convert to create a different format: owl diagram myontology.ttl - | convert - myontology.jpg Invocation where an ontology is downloaded, some terms are filtered and then piped to owl diagram: curl http://www.ontologydesignpatterns.org/cp/owl/partof.owl | \\ grep -v 'comment|cpannotation|versionInfo' | owl diagram - partof.svg The write command takes any RDF file in RDF/Turtle, RDF/XML, RDF N-Triples or N3 format as input and writes it out in any of those formats. When writing RDF/Turtle, the formatting of the resulting output can be configured extensively, as this makes use of the turtle-formatter library. General usage: owl write [options] input [output], where input can be either an RDF file, a URL (starting with http or https) or - (which means: read from standard in) and output can be either an RDF file or - (which means: write to standard out). If output is not given, the output filename is the input filename with its file extension changed, e.g. myontology.nt → myontology.ttl. If input is - or a URL and output is not given, the output is set to standard out. Table 2. write Command Options Option Description Default Notes -o, --output Output file format turtle Possible values: [turtle, rdfxml, ntriple, n3] -i, --input Input file format turtle Possible values: [turtle, rdfxml, ntriple, n3] -p, --prefix Prefix with corresponding URI to add as @prefix when serializing Turtle. This can be given multiple times, for multiple prefixes. You can specify a well-known prefix (currently: rdf, rdfs, xsd, owl, dcterms), e.g. -prdf or --prefix=rdf or any other prefix with its url: -pfoo=http://example.com/ or --prefix=foo=http://example.com/. To set the empty prefix, use -p==http://example.com/ or --prefix==http://example.com. --prefixAlign Alignment of @prefix statements off Possible values: [left, off, right] --encoding Output encoding utf_8 Possible values: [latin1, utf_16_be, utf_16_le, utf_8, utf_8_bom] --doubleFormat Defines how double numbers are formatted 0.####E0 See here for more information on the format --endOfLine End of line style lf Possible values: [cr, crlf, lf] --indent Indent style space Possible values: [tab, space]. Note that when choosing tab, alignPredicates and alignObjects are automatically treated as false. --firstPredicateInNewLine Write first predicate in new line of block Switched off by default --writeRdfType Write rdf:type instead of a Switched off by default --useCommaByDefault Use commas for multiple objects Switched off by default --noCommaForPredicate Use no commas for multiple objects for this predicate This can be given multiple times. --useLongLiterals Use long form for literals, e.g. \"5\"^^xsd:integer instead of 5 Switched off by default --alignObjects Align objects for same predicates Switched off by default --alignPredicates Align predicates for same subjects Switched off by default --continuationIndentSize Indentation size after forced line wraps 4 --doNotInsertFinalNewline Do not insert newline at end of file Switched off by default --indentSize Indentation size in spaces 2 --keepUnusedPrefixes Keeps prefixes that are not part of any statement Switched off by default --prefixOrder Sort order for prefixes (if they appear in a model) [rdf, rdfs, xsd, owl] Add this switch multiple times, once for each prefix, in the desired order --subjectOrder Sort order for subjects by type (if they appear in a model) [rdfs:Class, owl:Ontology, owl:Class, rdf:Property, owl:ObjectProperty, owl:DatatypeProperty, owl:AnnotationProperty, owl:NamedIndividual, owl:AllDifferent, owl:Axiom] Add this switch multiple times, once for each subject type, in the desired order --predicateOrder Sort order for predicates (if they appear on a subject) [rdf:type, rdfs:label, rdfs:comment, dcterms:description] Add this switch multiple times, once for each predicate, in the desired order --objectOrder Sort order for objects [owl:NamedIndividual, owl:ObjectProperty, owl:DatatypeProperty, owl:AnnotationProperty, owl:FunctionalProperty, owl:InverseFunctionalProperty, owl:TransitiveProperty, owl:SymmetricProperty, owl:AsymmetricProperty, owl:ReflexiveProperty, owl:IrreflexiveProperty] Add this switch multiple times, once for each object type, in the desired order --anonymousNodeIdPattern Name pattern for blank node IDs _:gen0 A 0 inside the pattern will be replace with the index of the respective blank node Simple invocation with default arguments: # Read myontology.ttl and print it in formatted Turtle format owl write myontology.ttl # Read myontology.owl in RDF/XML format and print it in formatted Turtle format, writing output.ttl owl write -i rdfxml myontology.owl output.ttl # Read myontology.n3 in N3 format and print it in formatted Turtle format to stdout owl write -i n3 myontology.n3 # Read myontology.nt in N-Triples format and print it in RDF/XML format to stdout owl write -i ntriple -o rdfxml myontology.nt Read an N-Triples file and write formatted Turtle, while also configuring which prefixes should be used: owl write -prdf -powl -pxsd -p'ex=http://example.com#' -i ntriple myontology.nt Read a Turtle file and print it out, while configuring the output’s formatting and prefix order: owl write --indentSize 4 --writeRdfType --prefixOrder owl --prefixOrder rdf myontology.turtle Read a remote ontology in RDF/XML format and print it in formatted Turtle format: owl write -i rdfxml 'http://www.ontologydesignpatterns.org/cp/owl/partof.owl' The infer command takes an OWL ontology as input and performs OWL 2 DL reasoning on it. Reasoning is done using the Openllet reasoner. General usage: owl infer input [output], where input can be either an ontology file, an URL or - (which means: read from standard in) and output can be either an ontology file or - (which means: write to standard out). If input is a file and output is not given, the input file is overwritten with the inferenced result. If input is - and output is not given, the output is set to standard out. Perform reasoning on the input ontology and write results to stdout: owl infer ontology.ttl -","title":"Usage","component":"main","version":"1.2.5","name":"usage","url":"/main/1.2.5/usage.html","titles":[{"text":"diagram Command","id":"diagram-command"},{"text":"General Usage","id":"diagram-usage"},{"text":"Options","id":"diagram-options"},{"text":"Example Usage","id":"diagram-example-usage"},{"text":"write Command","id":"write-command"},{"text":"General Usage","id":"write-usage"},{"text":"Options","id":"write-options"},{"text":"Example Usage","id":"write-example-usage"},{"text":"infer Command","id":"infer-command"},{"text":"General Usage","id":"infer-usage"},{"text":"Example Usage","id":"infer-example-usage"}]}}})