galFiltered.yaml

networktype: directed
edgetable:
  file: galFiltered.csv
nodetable:
  file: galExpData.csv
  idcolumn: GENE
  skipisolated: true
outputfiles:
  drawing: galFiltered.svg
  dot: galFiltered.dot
  nodetableout: galnt.tsv
  edgetableout: galet.tsv
  colorbars: galFiltered_colorbars.svg
networkanalysis: [AverageShortestPathLength, BetweennessCentrality, ClosenessCentrality, Degree, NeighborhoodConnectivity, SelfLoops, EdgeBetweenness, Indegree, Outdegree]
colormaps:
  bwy:
    type: continuous
    map:
      0.0: '#0066CCC0'
      0.5: '#FFFFFFC0'
      1.0: '#FFFF00C0'
layout: fdp
graphattrs:
  splines: spline
nodestyles:
  default:
    color: '#CCCCCC'
    ngfillcolor1:
      type: colormap
      colexpr: gal1RGexp
      centerzero: piecewise
      colormap: bwy
    ngfillcolor2:
      type: colormap
      colexpr: gal4RGexp
      centerzero: piecewise
      colormap: bwy
    ngfillcolor3:
      type: colormap
      colexpr: gal80Rexp
      centerzero: piecewise
      colormap: bwy
    fillcolor:
      type: combine
      attrlist: [ngfillcolor1, ngfillcolor2, ngfillcolor3]
      formatstring: '%s:%s:%s'
    shape: circle
    style: wedged
    label:
      type: direct
      colexpr: COMMON
    height:
      type: linear
      colexpr: Degree
      mapmin: 0.5
      mapmax: 1.6
    fixedsize: true
    fontsize:
      type: linear
      colexpr: Degree
      mapmin: 10.0
      mapmax: 28.0
    fontname: Arial
edgestyles:
  default:
    color:
      type: discrete
      colexpr: interaction
      map:
        pp: '#CCCCCC'
        pd: red
    dir:
      type: discrete
      colexpr: directed
      map:
        TRUE: forward
        FALSE: none